RNA–Protein interactions for RNA: ENST00000606000.1

CTSA-210, Transcript of cathepsin A, humanhuman

TSL 3

Gene CTSA, Length 644 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-210ENST00000606000 TERF2IPQ9NYB0 399 aa17.26■□□□□ 0.35
CTSA-210ENST00000606000 NINLQ9Y2I6 1382 aa17.26■□□□□ 0.35
CTSA-210ENST00000606000 PARP4Q9UKK3 1724 aaKnown RBP17.25■□□□□ 0.35
CTSA-210ENST00000606000 BLMP54132 1417 aaPredicted RBP17.25■□□□□ 0.35
CTSA-210ENST00000606000 CRB1P82279 1406 aa17.25■□□□□ 0.35
CTSA-210ENST00000606000 KCNH5Q8NCM2 988 aa17.25■□□□□ 0.35
CTSA-210ENST00000606000 LRRC37A3O60309 1634 aa17.25■□□□□ 0.35
CTSA-210ENST00000606000 TNS1Q9HBL0 1735 aaKnown RBP17.24■□□□□ 0.35
CTSA-210ENST00000606000 ANKRD36BQ8N2N9 1353 aa17.24■□□□□ 0.35
CTSA-210ENST00000606000 RGPD1P0DJD0 1748 aa17.23■□□□□ 0.35
CTSA-210ENST00000606000 KIF20BQ96Q89 1820 aa17.23■□□□□ 0.35
CTSA-210ENST00000606000 ABCC6O95255 1503 aa17.22■□□□□ 0.35
CTSA-210ENST00000606000 BARGINQ6ZT62 677 aa17.22■□□□□ 0.35
CTSA-210ENST00000606000 DEFB132Q7Z7B7 95 aa17.22■□□□□ 0.35
CTSA-210ENST00000606000 TCP11L2Q8N4U5 519 aa17.22■□□□□ 0.35
CTSA-210ENST00000606000 WDR17Q8IZU2 1322 aa17.21■□□□□ 0.34
CTSA-210ENST00000606000 SLC24A1O60721 1099 aa17.2■□□□□ 0.34
CTSA-210ENST00000606000 TOM1L2Q6ZVM7 507 aa17.2■□□□□ 0.34
CTSA-210ENST00000606000 CCDC125Q86Z20 511 aa17.19■□□□□ 0.34
CTSA-210ENST00000606000 FBLN1P23142 703 aa17.18■□□□□ 0.34
CTSA-210ENST00000606000 CSB-PGBD3P0DP91 1061 aa17.17■□□□□ 0.34
CTSA-210ENST00000606000 HSPA5P11021 654 aaKnown RBP17.17■□□□□ 0.34
CTSA-210ENST00000606000 PEAK1Q9H792 1746 aa17.17■□□□□ 0.34
CTSA-210ENST00000606000 THRAP3Q9Y2W1 955 aaKnown RBP17.17■□□□□ 0.34
CTSA-210ENST00000606000 DISP2A7MBM2 1401 aa17.15■□□□□ 0.34
CTSA-210ENST00000606000 SF3B2Q13435 895 aaKnown RBP17.15■□□□□ 0.34
CTSA-210ENST00000606000 CDCA8Q53HL2 280 aa17.15■□□□□ 0.34
CTSA-210ENST00000606000 POLR3GLQ9BT43 218 aa17.15■□□□□ 0.34
CTSA-210ENST00000606000 GGNBP2Q9H3C7 697 aa17.15■□□□□ 0.34
CTSA-210ENST00000606000 ERBB3P21860 1342 aa17.15■□□□□ 0.34
CTSA-210ENST00000606000 NSD3Q9BZ95 1437 aa17.14■□□□□ 0.33
CTSA-210ENST00000606000 EIF4G2P78344 907 aaKnown RBP eCLIP17.14■□□□□ 0.33
CTSA-210ENST00000606000 PDE3BQ13370 1112 aa17.14■□□□□ 0.33
CTSA-210ENST00000606000 COG3Q96JB2 828 aa17.14■□□□□ 0.33
CTSA-210ENST00000606000 CARD14Q9BXL6 1004 aa17.14■□□□□ 0.33
CTSA-210ENST00000606000 RGPD2P0DJD1 1756 aa17.14■□□□□ 0.33
CTSA-210ENST00000606000 FYB1O15117 783 aa17.13■□□□□ 0.33
CTSA-210ENST00000606000 TRIM37O94972 964 aa17.12■□□□□ 0.33
CTSA-210ENST00000606000 CARD10Q9BWT7 1032 aa17.12■□□□□ 0.33
CTSA-210ENST00000606000 FAM208AQ9UK61 1670 aaKnown RBP17.12■□□□□ 0.33
CTSA-210ENST00000606000 MAP3K19Q56UN5 1328 aa17.12■□□□□ 0.33
CTSA-210ENST00000606000 SBF2Q86WG5 1849 aa17.12■□□□□ 0.33
CTSA-210ENST00000606000 FAM196AQ6ZSG2 479 aa17.11■□□□□ 0.33
CTSA-210ENST00000606000 ANKRD24Q8TF21 1146 aa17.11■□□□□ 0.33
CTSA-210ENST00000606000 BAG6P46379 1132 aa17.1■□□□□ 0.33
CTSA-210ENST00000606000 EN1Q05925 392 aaPredicted RBP17.1■□□□□ 0.33
CTSA-210ENST00000606000 RRS1Q15050 365 aaKnown RBP17.1■□□□□ 0.33
CTSA-210ENST00000606000 DDB1Q16531 1140 aa17.1■□□□□ 0.33
CTSA-210ENST00000606000 LTV1Q96GA3 475 aaPredicted RBP17.09■□□□□ 0.33
CTSA-210ENST00000606000 NLRP2Q9NX02 1062 aa17.09■□□□□ 0.33
CTSA-210ENST00000606000 CCDC7Q96M83 1385 aa17.09■□□□□ 0.33
CTSA-210ENST00000606000 OVOS2A0A0G2JMS6 1433 aa17.09■□□□□ 0.33
CTSA-210ENST00000606000 ANKRD26Q9UPS8 1709 aa17.08■□□□□ 0.32
CTSA-210ENST00000606000 RREB1Q92766 1687 aa17.08■□□□□ 0.32
CTSA-210ENST00000606000 C11orf95C9JLR9 678 aaPredicted RBP17.08■□□□□ 0.32
CTSA-210ENST00000606000 HOXC9P31274 260 aa17.08■□□□□ 0.32
CTSA-210ENST00000606000 IP6K1Q92551 441 aa17.08■□□□□ 0.32
CTSA-210ENST00000606000 TNS2Q63HR2 1409 aa17.07■□□□□ 0.32
CTSA-210ENST00000606000 MARCH10Q8NA82 808 aaPredicted RBP17.07■□□□□ 0.32
CTSA-210ENST00000606000 AMPHP49418 695 aa17.06■□□□□ 0.32
CTSA-210ENST00000606000 EZH2Q15910 746 aaKnown RBP17.06■□□□□ 0.32
CTSA-210ENST00000606000 NUP188Q5SRE5 1749 aa17.06■□□□□ 0.32
CTSA-210ENST00000606000 PTF1AQ7RTS3 328 aa17.05■□□□□ 0.32
CTSA-210ENST00000606000 RTL1A6NKG5 1358 aa17.04■□□□□ 0.32
CTSA-210ENST00000606000 APBA3O96018 575 aa17.04■□□□□ 0.32
CTSA-210ENST00000606000 CDCA7Q9BWT1 371 aaPredicted RBP17.04■□□□□ 0.32
CTSA-210ENST00000606000 SHANK3Q9BYB0 1731 aa17.04■□□□□ 0.32
CTSA-210ENST00000606000 NHSQ6T4R5 1651 aa17.02■□□□□ 0.32
CTSA-210ENST00000606000 IL2RBP14784 551 aa17.02■□□□□ 0.32
CTSA-210ENST00000606000 CAMKK2Q96RR4 588 aa17.02■□□□□ 0.32
CTSA-210ENST00000606000 MAP2P11137 1827 aaKnown RBP17.01■□□□□ 0.31
CTSA-210ENST00000606000 PSDA5PKW4 1024 aaPredicted RBP17.01■□□□□ 0.31
CTSA-210ENST00000606000 EXOC5O00471 708 aa17.01■□□□□ 0.31
CTSA-210ENST00000606000 EMILIN1Q9Y6C2 1016 aa17.01■□□□□ 0.31
CTSA-210ENST00000606000 MEGF6O75095 1541 aa17.01■□□□□ 0.31
CTSA-210ENST00000606000 RGPD3A6NKT7 1758 aaPredicted RBP17■□□□□ 0.31
CTSA-210ENST00000606000 RGPD4Q7Z3J3 1758 aa17■□□□□ 0.31
CTSA-210ENST00000606000 HSP90AB2PQ58FF8 381 aa17■□□□□ 0.31
CTSA-210ENST00000606000 USHBP1Q8N6Y0 703 aa17■□□□□ 0.31
CTSA-210ENST00000606000 PANK3Q9H999 370 aa17■□□□□ 0.31
CTSA-210ENST00000606000 CGNL1Q0VF96 1302 aa16.99■□□□□ 0.31
CTSA-210ENST00000606000 BCL9O00512 1426 aa16.99■□□□□ 0.31
CTSA-210ENST00000606000 FLT4P35916 1363 aa16.99■□□□□ 0.31
CTSA-210ENST00000606000 KIF7Q2M1P5 1343 aa16.98■□□□□ 0.31
CTSA-210ENST00000606000 NBPF6Q5VWK0 638 aa16.98■□□□□ 0.31
CTSA-210ENST00000606000 NBPF4Q96M43 638 aa16.98■□□□□ 0.31
CTSA-210ENST00000606000 INSRP06213 1382 aa16.98■□□□□ 0.31
CTSA-210ENST00000606000 DOT1LQ8TEK3 1739 aa16.98■□□□□ 0.31
CTSA-210ENST00000606000 SMG6Q86US8 1419 aaKnown RBP16.96■□□□□ 0.31
CTSA-210ENST00000606000 PPM1GO15355 546 aaPredicted RBP16.96■□□□□ 0.31
CTSA-210ENST00000606000 KCNQ2O43526 872 aa16.96■□□□□ 0.31
CTSA-210ENST00000606000 TNNT2P45379 298 aaPredicted RBP16.96■□□□□ 0.31
CTSA-210ENST00000606000 ACSBG1Q96GR2 724 aa16.96■□□□□ 0.31
CTSA-210ENST00000606000 PARD3Q8TEW0 1356 aa16.96■□□□□ 0.31
CTSA-210ENST00000606000 BTAF1O14981 1849 aa16.96■□□□□ 0.3
CTSA-210ENST00000606000 R3HDM1Q15032 1099 aaKnown RBP16.95■□□□□ 0.3
CTSA-210ENST00000606000 BCL11BQ9C0K0 894 aaPredicted RBP16.95■□□□□ 0.3
CTSA-210ENST00000606000 KIF24Q5T7B8 1368 aa16.94■□□□□ 0.3
CTSA-210ENST00000606000 DDX54Q8TDD1 881 aaKnown RBP16.93■□□□□ 0.3
CTSA-210ENST00000606000 POLKQ9UBT6 870 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 119.5 ms