RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 CHD1LQ86WJ1 897 aa12.72□□□□□ -0.37
LIG1-220ENST00000601091 NECTIN2Q92692 538 aa12.72□□□□□ -0.37
LIG1-220ENST00000601091 TNNQ9UQP3 1299 aa12.72□□□□□ -0.37
LIG1-220ENST00000601091 TRAK2O60296 914 aa12.71□□□□□ -0.37
LIG1-220ENST00000601091 DMRT2Q9Y5R5 561 aa12.71□□□□□ -0.37
LIG1-220ENST00000601091 ZNF521Q96K83 1311 aa12.71□□□□□ -0.37
LIG1-220ENST00000601091 ARMCX6Q7L4S7 300 aa12.71□□□□□ -0.38
LIG1-220ENST00000601091 PIK3R5Q8WYR1 880 aa12.71□□□□□ -0.38
LIG1-220ENST00000601091 ANKRD36BQ8N2N9 1353 aa12.71□□□□□ -0.38
LIG1-220ENST00000601091 PRDM15P57071 1507 aaPredicted RBP12.71□□□□□ -0.38
LIG1-220ENST00000601091 TRHP20396 242 aaPredicted RBP12.71□□□□□ -0.38
LIG1-220ENST00000601091 C1orf115Q9H7X2 142 aa12.71□□□□□ -0.38
LIG1-220ENST00000601091 EID1Q9Y6B2 187 aa12.71□□□□□ -0.38
LIG1-220ENST00000601091 DDX49Q9Y6V7 483 aaKnown RBP12.71□□□□□ -0.38
LIG1-220ENST00000601091 PREX2Q70Z35 1606 aa12.7□□□□□ -0.38
LIG1-220ENST00000601091 ALDH1L2Q3SY69 923 aa12.7□□□□□ -0.38
LIG1-220ENST00000601091 EP400NLQ6ZTU2 488 aa12.7□□□□□ -0.38
LIG1-220ENST00000601091 CDC45O75419 566 aa12.7□□□□□ -0.38
LIG1-220ENST00000601091 RLBP1P12271 317 aa12.7□□□□□ -0.38
LIG1-220ENST00000601091 SEMA3FQ13275 785 aa12.7□□□□□ -0.38
LIG1-220ENST00000601091 NFE2L2Q16236 605 aa12.7□□□□□ -0.38
LIG1-220ENST00000601091 TAF3Q5VWG9 929 aa12.7□□□□□ -0.38
LIG1-220ENST00000601091 TBC1D32Q96NH3 1257 aa12.7□□□□□ -0.38
LIG1-220ENST00000601091 TBC1D2Q9BYX2 928 aa12.7□□□□□ -0.38
LIG1-220ENST00000601091 ATP10AO60312 1499 aa12.7□□□□□ -0.38
LIG1-220ENST00000601091 TRIM6-TRIM34B2RNG4 842 aa12.7□□□□□ -0.38
LIG1-220ENST00000601091 REC8O95072 547 aa12.7□□□□□ -0.38
LIG1-220ENST00000601091 MSNP26038 577 aaKnown RBP12.7□□□□□ -0.38
LIG1-220ENST00000601091 TRMT2AQ8IZ69 625 aaKnown RBP12.7□□□□□ -0.38
LIG1-220ENST00000601091 CROCC2H7BZ55 1655 aa12.69□□□□□ -0.38
LIG1-220ENST00000601091 ASXL2Q76L83 1435 aa12.69□□□□□ -0.38
LIG1-220ENST00000601091 MCM4P33991 863 aa12.69□□□□□ -0.38
LIG1-220ENST00000601091 FAM177A1Q8N128 213 aaPredicted RBP12.69□□□□□ -0.38
LIG1-220ENST00000601091 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.69□□□□□ -0.38
LIG1-220ENST00000601091 IL16Q14005 1332 aa12.69□□□□□ -0.38
LIG1-220ENST00000601091 INTS3Q68E01 1043 aaKnown RBP12.68□□□□□ -0.38
LIG1-220ENST00000601091 ZNF518AQ6AHZ1 1483 aa12.68□□□□□ -0.38
LIG1-220ENST00000601091 FYB1O15117 783 aa12.68□□□□□ -0.38
LIG1-220ENST00000601091 TPM2P07951 284 aa12.68□□□□□ -0.38
LIG1-220ENST00000601091 TXNDC2Q86VQ3 553 aa12.68□□□□□ -0.38
LIG1-220ENST00000601091 TTC37Q6PGP7 1564 aa12.67□□□□□ -0.38
LIG1-220ENST00000601091 MRE11P49959 708 aa12.67□□□□□ -0.38
LIG1-220ENST00000601091 MYO5CQ9NQX4 1742 aa12.67□□□□□ -0.38
LIG1-220ENST00000601091 LMOD2Q6P5Q4 547 aa12.67□□□□□ -0.38
LIG1-220ENST00000601091 KIAA1211Q6ZU35 1233 aa12.67□□□□□ -0.38
LIG1-220ENST00000601091 HDAC1Q13547 482 aaPredicted RBP12.67□□□□□ -0.38
LIG1-220ENST00000601091 THUMPD2Q9BTF0 503 aaKnown RBP12.67□□□□□ -0.38
LIG1-220ENST00000601091 TNNT1P13805 278 aa12.66□□□□□ -0.38
LIG1-220ENST00000601091 WAPLQ7Z5K2 1190 aa12.66□□□□□ -0.38
LIG1-220ENST00000601091 ATP7AQ04656 1500 aa12.66□□□□□ -0.38
LIG1-220ENST00000601091 KCNJ4P48050 445 aa12.66□□□□□ -0.38
LIG1-220ENST00000601091 TRPM1Q7Z4N2 1603 aa12.66□□□□□ -0.38
LIG1-220ENST00000601091 POLR1AO95602 1720 aaPredicted RBP12.66□□□□□ -0.38
LIG1-220ENST00000601091 XRCC6P12956 609 aaKnown RBP eCLIP12.65□□□□□ -0.38
LIG1-220ENST00000601091 NUCB2P80303 420 aa12.65□□□□□ -0.38
LIG1-220ENST00000601091 ZNF513Q8N8E2 541 aaPredicted RBP12.65□□□□□ -0.38
LIG1-220ENST00000601091 MAP7D2Q96T17 732 aa12.65□□□□□ -0.38
LIG1-220ENST00000601091 CCDC61Q9Y6R9 512 aa12.65□□□□□ -0.38
LIG1-220ENST00000601091 POLD1P28340 1107 aa12.65□□□□□ -0.38
LIG1-220ENST00000601091 SULT6B1Q6IMI4 303 aa12.65□□□□□ -0.38
LIG1-220ENST00000601091 SBNO2Q9Y2G9 1366 aa12.65□□□□□ -0.38
LIG1-220ENST00000601091 PTPRTO14522 1441 aa12.64□□□□□ -0.39
LIG1-220ENST00000601091 LTV1Q96GA3 475 aaPredicted RBP12.64□□□□□ -0.39
LIG1-220ENST00000601091 TSPYL4Q9UJ04 414 aa12.64□□□□□ -0.39
LIG1-220ENST00000601091 KAT6BQ8WYB5 2073 aa12.64□□□□□ -0.39
LIG1-220ENST00000601091 FBXO31Q5XUX0 539 aaPredicted RBP12.64□□□□□ -0.39
LIG1-220ENST00000601091 RILPL2Q969X0 211 aa12.64□□□□□ -0.39
LIG1-220ENST00000601091 IFT57Q9NWB7 429 aa12.64□□□□□ -0.39
LIG1-220ENST00000601091 RRS1Q15050 365 aaKnown RBP12.63□□□□□ -0.39
LIG1-220ENST00000601091 CIZ1Q9ULV3 898 aaPredicted RBP12.63□□□□□ -0.39
LIG1-220ENST00000601091 SH3BP1Q9Y3L3 701 aa12.63□□□□□ -0.39
LIG1-220ENST00000601091 TRPM2O94759 1503 aa12.63□□□□□ -0.39
LIG1-220ENST00000601091 SYAP1Q96A49 352 aaPredicted RBP12.63□□□□□ -0.39
LIG1-220ENST00000601091 IQGAP3Q86VI3 1631 aa12.63□□□□□ -0.39
LIG1-220ENST00000601091 PRR29P0C7W0 189 aa12.62□□□□□ -0.39
LIG1-220ENST00000601091 FKBP5Q13451 457 aaPredicted RBP12.62□□□□□ -0.39
LIG1-220ENST00000601091 KCTD17Q8N5Z5 321 aa12.62□□□□□ -0.39
LIG1-220ENST00000601091 SYNMO15061 1565 aa12.62□□□□□ -0.39
LIG1-220ENST00000601091 RABEP1Q15276 862 aa12.62□□□□□ -0.39
LIG1-220ENST00000601091 NOL8Q76FK4 1167 aaKnown RBP12.62□□□□□ -0.39
LIG1-220ENST00000601091 NUDT16Q96DE0 195 aaKnown RBP12.62□□□□□ -0.39
LIG1-220ENST00000601091 EMILIN1Q9Y6C2 1016 aa12.62□□□□□ -0.39
LIG1-220ENST00000601091 K7ELQ4 463 aaPredicted RBP12.62□□□□□ -0.39
LIG1-220ENST00000601091 PLXNC1O60486 1568 aa12.61□□□□□ -0.39
LIG1-220ENST00000601091 ERVK-7P63135 1459 aa12.61□□□□□ -0.39
LIG1-220ENST00000601091 UNC13BO14795 1591 aa12.61□□□□□ -0.39
LIG1-220ENST00000601091 ABCC1P33527 1531 aa12.61□□□□□ -0.39
LIG1-220ENST00000601091 NME9Q86XW9 330 aa12.61□□□□□ -0.39
LIG1-220ENST00000601091 ISY1Q9ULR0 285 aaKnown RBP12.61□□□□□ -0.39
LIG1-220ENST00000601091 SLC4A2P04920 1241 aa12.6□□□□□ -0.39
LIG1-220ENST00000601091 HSP90AB3PQ58FF7 597 aa12.6□□□□□ -0.39
LIG1-220ENST00000601091 EGFL6Q8IUX8 553 aa12.6□□□□□ -0.39
LIG1-220ENST00000601091 UHRF1BP1LA0JNW5 1464 aa12.6□□□□□ -0.39
LIG1-220ENST00000601091 BMP2KLQ5H9B9 411 aa12.6□□□□□ -0.39
LIG1-220ENST00000601091 RPAP2Q8IXW5 612 aaPredicted RBP12.6□□□□□ -0.39
LIG1-220ENST00000601091 KDM5AP29375 1690 aaKnown RBP12.6□□□□□ -0.39
LIG1-220ENST00000601091 CC2D2BQ6DHV5 1058 aa12.6□□□□□ -0.39
LIG1-220ENST00000601091 FBLN1P23142 703 aa12.59□□□□□ -0.39
LIG1-220ENST00000601091 NUCB1Q02818 461 aa12.59□□□□□ -0.39
LIG1-220ENST00000601091 SMC5Q8IY18 1101 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms