RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 TRPM1Q7Z4N2 1603 aa17.92■□□□□ 0.46
TRIM28-212ENST00000597995 SIN3AQ96ST3 1273 aa17.92■□□□□ 0.46
TRIM28-212ENST00000597995 BCL11BQ9C0K0 894 aaPredicted RBP17.92■□□□□ 0.46
TRIM28-212ENST00000597995 BCL9O00512 1426 aa17.91■□□□□ 0.46
TRIM28-212ENST00000597995 CPSF1Q10570 1443 aaKnown RBP17.91■□□□□ 0.46
TRIM28-212ENST00000597995 SPON1Q9HCB6 807 aa17.91■□□□□ 0.46
TRIM28-212ENST00000597995 ROCK2O75116 1388 aaKnown RBP17.91■□□□□ 0.46
TRIM28-212ENST00000597995 LRRC37A3O60309 1634 aa17.9■□□□□ 0.46
TRIM28-212ENST00000597995 CARD10Q9BWT7 1032 aa17.9■□□□□ 0.46
TRIM28-212ENST00000597995 SBF2Q86WG5 1849 aa17.9■□□□□ 0.46
TRIM28-212ENST00000597995 RGPD3A6NKT7 1758 aaPredicted RBP17.89■□□□□ 0.45
TRIM28-212ENST00000597995 RGPD4Q7Z3J3 1758 aa17.89■□□□□ 0.45
TRIM28-212ENST00000597995 KCNQ2O43526 872 aa17.89■□□□□ 0.45
TRIM28-212ENST00000597995 MARCH10Q8NA82 808 aaPredicted RBP17.88■□□□□ 0.45
TRIM28-212ENST00000597995 AKAP12Q02952 1782 aa17.88■□□□□ 0.45
TRIM28-212ENST00000597995 CSB-PGBD3P0DP91 1061 aa17.87■□□□□ 0.45
TRIM28-212ENST00000597995 NEUROD1Q13562 356 aa17.86■□□□□ 0.45
TRIM28-212ENST00000597995 PPP1R1BQ9UD71 204 aaPredicted RBP17.86■□□□□ 0.45
TRIM28-212ENST00000597995 KTN1Q86UP2 1357 aaKnown RBP17.86■□□□□ 0.45
TRIM28-212ENST00000597995 WNK3Q9BYP7 1800 aa17.86■□□□□ 0.45
TRIM28-212ENST00000597995 EXOC5O00471 708 aa17.85■□□□□ 0.45
TRIM28-212ENST00000597995 PTF1AQ7RTS3 328 aa17.85■□□□□ 0.45
TRIM28-212ENST00000597995 SBNO2Q9Y2G9 1366 aa17.85■□□□□ 0.45
TRIM28-212ENST00000597995 ABCC6O95255 1503 aa17.84■□□□□ 0.45
TRIM28-212ENST00000597995 CCDC7Q96M83 1385 aa17.84■□□□□ 0.45
TRIM28-212ENST00000597995 SOX12O15370 315 aa17.84■□□□□ 0.45
TRIM28-212ENST00000597995 PROM2Q8N271 834 aa17.84■□□□□ 0.45
TRIM28-212ENST00000597995 RGPD5Q99666 1765 aa17.84■□□□□ 0.45
TRIM28-212ENST00000597995 NFAT5O94916 1531 aa17.83■□□□□ 0.45
TRIM28-212ENST00000597995 USP31Q70CQ4 1352 aa17.83■□□□□ 0.45
TRIM28-212ENST00000597995 NINLQ9Y2I6 1382 aa17.83■□□□□ 0.45
TRIM28-212ENST00000597995 ANO8Q9HCE9 1232 aaPredicted RBP17.83■□□□□ 0.44
TRIM28-212ENST00000597995 TRIM26Q12899 539 aaPredicted RBP17.82■□□□□ 0.44
TRIM28-212ENST00000597995 DCAF8L1A6NGE4 600 aa17.81■□□□□ 0.44
TRIM28-212ENST00000597995 TXNRD1Q16881 649 aa17.8■□□□□ 0.44
TRIM28-212ENST00000597995 MON2Q7Z3U7 1717 aa17.8■□□□□ 0.44
TRIM28-212ENST00000597995 YY1P25490 414 aa17.79■□□□□ 0.44
TRIM28-212ENST00000597995 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.79■□□□□ 0.44
TRIM28-212ENST00000597995 CARD11Q9BXL7 1154 aa17.78■□□□□ 0.44
TRIM28-212ENST00000597995 TNS2Q63HR2 1409 aa17.78■□□□□ 0.44
TRIM28-212ENST00000597995 CASZ1Q86V15 1759 aa17.78■□□□□ 0.44
TRIM28-212ENST00000597995 USP54Q70EL1 1684 aa17.77■□□□□ 0.44
TRIM28-212ENST00000597995 ERBB3P21860 1342 aa17.77■□□□□ 0.44
TRIM28-212ENST00000597995 CD163L1Q9NR16 1453 aa17.77■□□□□ 0.44
TRIM28-212ENST00000597995 HDGFL2Q7Z4V5 671 aaPredicted RBP17.77■□□□□ 0.44
TRIM28-212ENST00000597995 NME9Q86XW9 330 aa17.77■□□□□ 0.44
TRIM28-212ENST00000597995 PUS7Q96PZ0 661 aaKnown RBP17.77■□□□□ 0.44
TRIM28-212ENST00000597995 STK32BQ9NY57 414 aa17.77■□□□□ 0.44
TRIM28-212ENST00000597995 SLC15A2Q16348 729 aa17.76■□□□□ 0.43
TRIM28-212ENST00000597995 PDGFDQ9GZP0 370 aaPredicted RBP17.76■□□□□ 0.43
TRIM28-212ENST00000597995 NLRP2Q9NX02 1062 aa17.76■□□□□ 0.43
TRIM28-212ENST00000597995 IL2RBP14784 551 aa17.75■□□□□ 0.43
TRIM28-212ENST00000597995 TMC1Q8TDI8 760 aa17.75■□□□□ 0.43
TRIM28-212ENST00000597995 SLC12A5Q9H2X9 1139 aa17.75■□□□□ 0.43
TRIM28-212ENST00000597995 ZBTB7AO95365 584 aa17.74■□□□□ 0.43
TRIM28-212ENST00000597995 TERF2IPQ9NYB0 399 aa17.74■□□□□ 0.43
TRIM28-212ENST00000597995 EDC4Q6P2E9 1401 aaKnown RBP17.73■□□□□ 0.43
TRIM28-212ENST00000597995 PTGER2P43116 358 aa17.73■□□□□ 0.43
TRIM28-212ENST00000597995 NHSQ6T4R5 1651 aa17.72■□□□□ 0.43
TRIM28-212ENST00000597995 ANKRD24Q8TF21 1146 aa17.72■□□□□ 0.43
TRIM28-212ENST00000597995 ACSBG1Q96GR2 724 aa17.71■□□□□ 0.43
TRIM28-212ENST00000597995 MTFR1LQ9H019 292 aa17.71■□□□□ 0.43
TRIM28-212ENST00000597995 ATF5Q9Y2D1 282 aaPredicted RBP17.71■□□□□ 0.43
TRIM28-212ENST00000597995 LTN1O94822 1766 aa17.71■□□□□ 0.43
TRIM28-212ENST00000597995 A0A1W2PP64 1363 aa17.69■□□□□ 0.42
TRIM28-212ENST00000597995 IP6K1Q92551 441 aa17.69■□□□□ 0.42
TRIM28-212ENST00000597995 SLC24A1O60721 1099 aa17.68■□□□□ 0.42
TRIM28-212ENST00000597995 SGIP1Q9BQI5 828 aa17.68■□□□□ 0.42
TRIM28-212ENST00000597995 TONSLQ96HA7 1378 aa17.67■□□□□ 0.42
TRIM28-212ENST00000597995 MYOM1P52179 1685 aa17.67■□□□□ 0.42
TRIM28-212ENST00000597995 SYT17Q9BSW7 474 aa17.66■□□□□ 0.42
TRIM28-212ENST00000597995 KAT6BQ8WYB5 2073 aa17.66■□□□□ 0.42
TRIM28-212ENST00000597995 FHDC1Q9C0D6 1143 aaPredicted RBP17.65■□□□□ 0.42
TRIM28-212ENST00000597995 BTAF1O14981 1849 aa17.64■□□□□ 0.41
TRIM28-212ENST00000597995 TESK2Q96S53 571 aa17.64■□□□□ 0.41
TRIM28-212ENST00000597995 PAPPAQ13219 1627 aa17.64■□□□□ 0.41
TRIM28-212ENST00000597995 SLC27A3Q5K4L6 730 aa17.63■□□□□ 0.41
TRIM28-212ENST00000597995 COG3Q96JB2 828 aa17.63■□□□□ 0.41
TRIM28-212ENST00000597995 LRRC4BQ9NT99 713 aa17.63■□□□□ 0.41
TRIM28-212ENST00000597995 FAM208AQ9UK61 1670 aaKnown RBP17.62■□□□□ 0.41
TRIM28-212ENST00000597995 DDX54Q8TDD1 881 aaKnown RBP17.62■□□□□ 0.41
TRIM28-212ENST00000597995 ARXQ96QS3 562 aa17.62■□□□□ 0.41
TRIM28-212ENST00000597995 ST20-MTHFSA0A0A6YYL1 179 aa17.61■□□□□ 0.41
TRIM28-212ENST00000597995 ZNF827Q17R98 1081 aa17.61■□□□□ 0.41
TRIM28-212ENST00000597995 SLC16A10Q8TF71 515 aa17.61■□□□□ 0.41
TRIM28-212ENST00000597995 AKT1S1Q96B36 256 aa17.61■□□□□ 0.41
TRIM28-212ENST00000597995 LTV1Q96GA3 475 aaPredicted RBP17.61■□□□□ 0.41
TRIM28-212ENST00000597995 MAP3K19Q56UN5 1328 aa17.61■□□□□ 0.41
TRIM28-212ENST00000597995 MAP3K5Q99683 1374 aa17.61■□□□□ 0.41
TRIM28-212ENST00000597995 HOXC9P31274 260 aa17.6■□□□□ 0.41
TRIM28-212ENST00000597995 AMPHP49418 695 aa17.6■□□□□ 0.41
TRIM28-212ENST00000597995 ZCRB1Q8TBF4 217 aaKnown RBP17.58■□□□□ 0.4
TRIM28-212ENST00000597995 ANKRD36BQ8N2N9 1353 aa17.57■□□□□ 0.4
TRIM28-212ENST00000597995 PRIM1P49642 420 aaKnown RBP17.57■□□□□ 0.4
TRIM28-212ENST00000597995 ZNF784Q8NCA9 323 aaPredicted RBP17.56■□□□□ 0.4
TRIM28-212ENST00000597995 QSER1Q2KHR3 1735 aa17.55■□□□□ 0.4
TRIM28-212ENST00000597995 RTL1A6NKG5 1358 aa17.55■□□□□ 0.4
TRIM28-212ENST00000597995 FBLN1P23142 703 aa17.55■□□□□ 0.4
TRIM28-212ENST00000597995 SYTL4Q96C24 671 aaPredicted RBP17.55■□□□□ 0.4
TRIM28-212ENST00000597995 UTRNP46939 3433 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms