RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 LARP1Q6PKG0 1096 aaKnown RBP24.76■■□□□ 1.55
SHKBP1-204ENST00000594862 TCP11L2Q8N4U5 519 aa24.76■■□□□ 1.55
SHKBP1-204ENST00000594862 NME9Q86XW9 330 aa24.75■■□□□ 1.55
SHKBP1-204ENST00000594862 ZRANB1Q9UGI0 708 aa24.75■■□□□ 1.55
SHKBP1-204ENST00000594862 OVOS2A0A0J9YW53 1432 aa24.75■■□□□ 1.55
SHKBP1-204ENST00000594862 OVOS2Q6IE36 1432 aa24.75■■□□□ 1.55
SHKBP1-204ENST00000594862 SF3B2Q13435 895 aaKnown RBP24.73■■□□□ 1.55
SHKBP1-204ENST00000594862 WDR17Q8IZU2 1322 aa24.72■■□□□ 1.55
SHKBP1-204ENST00000594862 SOX12O15370 315 aa24.72■■□□□ 1.55
SHKBP1-204ENST00000594862 USP35Q9P2H5 1018 aa24.72■■□□□ 1.55
SHKBP1-204ENST00000594862 LTN1O94822 1766 aa24.71■■□□□ 1.55
SHKBP1-204ENST00000594862 PARP4Q9UKK3 1724 aaKnown RBP24.71■■□□□ 1.55
SHKBP1-204ENST00000594862 EIF4G2P78344 907 aaKnown RBP eCLIP24.7■■□□□ 1.54
SHKBP1-204ENST00000594862 MYOM1P52179 1685 aa24.69■■□□□ 1.54
SHKBP1-204ENST00000594862 TOM1L2Q6ZVM7 507 aa24.69■■□□□ 1.54
SHKBP1-204ENST00000594862 RGPD1P0DJD0 1748 aa24.69■■□□□ 1.54
SHKBP1-204ENST00000594862 COG3Q96JB2 828 aa24.68■■□□□ 1.54
SHKBP1-204ENST00000594862 WNK3Q9BYP7 1800 aa24.68■■□□□ 1.54
SHKBP1-204ENST00000594862 RGPD5Q99666 1765 aa24.67■■□□□ 1.54
SHKBP1-204ENST00000594862 CDCA7Q9BWT1 371 aaPredicted RBP24.67■■□□□ 1.54
SHKBP1-204ENST00000594862 C11orf95C9JLR9 678 aaPredicted RBP24.66■■□□□ 1.54
SHKBP1-204ENST00000594862 PDE3BQ13370 1112 aa24.66■■□□□ 1.54
SHKBP1-204ENST00000594862 AXIN2Q9Y2T1 843 aa24.66■■□□□ 1.54
SHKBP1-204ENST00000594862 CSB-PGBD3P0DP91 1061 aa24.65■■□□□ 1.54
SHKBP1-204ENST00000594862 KIF20BQ96Q89 1820 aa24.65■■□□□ 1.54
SHKBP1-204ENST00000594862 CCDC7Q96M83 1385 aa24.65■■□□□ 1.54
SHKBP1-204ENST00000594862 FAM196AQ6ZSG2 479 aa24.64■■□□□ 1.54
SHKBP1-204ENST00000594862 CARD10Q9BWT7 1032 aa24.63■■□□□ 1.53
SHKBP1-204ENST00000594862 LRRC37A3O60309 1634 aa24.62■■□□□ 1.53
SHKBP1-204ENST00000594862 FAM208AQ9UK61 1670 aaKnown RBP24.62■■□□□ 1.53
SHKBP1-204ENST00000594862 BAG6P46379 1132 aa24.61■■□□□ 1.53
SHKBP1-204ENST00000594862 DEFB132Q7Z7B7 95 aa24.61■■□□□ 1.53
SHKBP1-204ENST00000594862 ERBB3P21860 1342 aa24.61■■□□□ 1.53
SHKBP1-204ENST00000594862 HSPA5P11021 654 aaKnown RBP24.59■■□□□ 1.53
SHKBP1-204ENST00000594862 TNS1Q9HBL0 1735 aaKnown RBP24.58■■□□□ 1.53
SHKBP1-204ENST00000594862 RTL1A6NKG5 1358 aa24.58■■□□□ 1.53
SHKBP1-204ENST00000594862 DISP2A7MBM2 1401 aa24.58■■□□□ 1.53
SHKBP1-204ENST00000594862 FYB1O15117 783 aa24.57■■□□□ 1.52
SHKBP1-204ENST00000594862 DDB1Q16531 1140 aa24.57■■□□□ 1.52
SHKBP1-204ENST00000594862 OVOS2A0A0G2JMS6 1433 aa24.57■■□□□ 1.52
SHKBP1-204ENST00000594862 NSD3Q9BZ95 1437 aa24.56■■□□□ 1.52
SHKBP1-204ENST00000594862 IP6K1Q92551 441 aa24.56■■□□□ 1.52
SHKBP1-204ENST00000594862 FAM182BQ5T319 152 aa24.55■■□□□ 1.52
SHKBP1-204ENST00000594862 ANKRD24Q8TF21 1146 aa24.54■■□□□ 1.52
SHKBP1-204ENST00000594862 GGNBP2Q9H3C7 697 aa24.53■■□□□ 1.52
SHKBP1-204ENST00000594862 NLRP2Q9NX02 1062 aa24.53■■□□□ 1.52
SHKBP1-204ENST00000594862 CGNL1Q0VF96 1302 aa24.53■■□□□ 1.52
SHKBP1-204ENST00000594862 MAP3K19Q56UN5 1328 aa24.53■■□□□ 1.52
SHKBP1-204ENST00000594862 KIF24Q5T7B8 1368 aa24.53■■□□□ 1.52
SHKBP1-204ENST00000594862 AMPHP49418 695 aa24.52■■□□□ 1.52
SHKBP1-204ENST00000594862 PARD3Q8TEW0 1356 aa24.52■■□□□ 1.52
SHKBP1-204ENST00000594862 PEAK1Q9H792 1746 aa24.52■■□□□ 1.52
SHKBP1-204ENST00000594862 POLR3GLQ9BT43 218 aa24.51■■□□□ 1.51
SHKBP1-204ENST00000594862 TNS2Q63HR2 1409 aa24.51■■□□□ 1.51
SHKBP1-204ENST00000594862 CARD14Q9BXL6 1004 aa24.5■■□□□ 1.51
SHKBP1-204ENST00000594862 BCL9O00512 1426 aa24.5■■□□□ 1.51
SHKBP1-204ENST00000594862 SMG6Q86US8 1419 aaKnown RBP24.5■■□□□ 1.51
SHKBP1-204ENST00000594862 TRIM37O94972 964 aa24.49■■□□□ 1.51
SHKBP1-204ENST00000594862 HOXC9P31274 260 aa24.49■■□□□ 1.51
SHKBP1-204ENST00000594862 EXOC5O00471 708 aa24.47■■□□□ 1.51
SHKBP1-204ENST00000594862 IL2RBP14784 551 aa24.47■■□□□ 1.51
SHKBP1-204ENST00000594862 ANKRD26Q9UPS8 1709 aa24.47■■□□□ 1.51
SHKBP1-204ENST00000594862 FLT4P35916 1363 aa24.45■■□□□ 1.5
SHKBP1-204ENST00000594862 SBF2Q86WG5 1849 aa24.44■■□□□ 1.5
SHKBP1-204ENST00000594862 RGPD3A6NKT7 1758 aaPredicted RBP24.44■■□□□ 1.5
SHKBP1-204ENST00000594862 RGPD4Q7Z3J3 1758 aa24.44■■□□□ 1.5
SHKBP1-204ENST00000594862 NSD2O96028 1365 aa24.43■■□□□ 1.5
SHKBP1-204ENST00000594862 APBA3O96018 575 aa24.43■■□□□ 1.5
SHKBP1-204ENST00000594862 EN1Q05925 392 aaPredicted RBP24.43■■□□□ 1.5
SHKBP1-204ENST00000594862 INSRP06213 1382 aa24.42■■□□□ 1.5
SHKBP1-204ENST00000594862 RRS1Q15050 365 aaKnown RBP24.42■■□□□ 1.5
SHKBP1-204ENST00000594862 LTV1Q96GA3 475 aaPredicted RBP24.42■■□□□ 1.5
SHKBP1-204ENST00000594862 MARCH10Q8NA82 808 aaPredicted RBP24.41■■□□□ 1.5
SHKBP1-204ENST00000594862 LRP5O75197 1615 aa24.4■■□□□ 1.5
SHKBP1-204ENST00000594862 RREB1Q92766 1687 aa24.4■■□□□ 1.5
SHKBP1-204ENST00000594862 FBLN1P23142 703 aa24.38■■□□□ 1.49
SHKBP1-204ENST00000594862 CAMKK2Q96RR4 588 aa24.38■■□□□ 1.49
SHKBP1-204ENST00000594862 BCL11BQ9C0K0 894 aaPredicted RBP24.38■■□□□ 1.49
SHKBP1-204ENST00000594862 PANK3Q9H999 370 aa24.38■■□□□ 1.49
SHKBP1-204ENST00000594862 PSDA5PKW4 1024 aaPredicted RBP24.37■■□□□ 1.49
SHKBP1-204ENST00000594862 NHSQ6T4R5 1651 aa24.36■■□□□ 1.49
SHKBP1-204ENST00000594862 RGPD2P0DJD1 1756 aa24.35■■□□□ 1.49
SHKBP1-204ENST00000594862 EZH2Q15910 746 aaKnown RBP24.35■■□□□ 1.49
SHKBP1-204ENST00000594862 KIF7Q2M1P5 1343 aa24.34■■□□□ 1.49
SHKBP1-204ENST00000594862 HSP90AB2PQ58FF8 381 aa24.33■■□□□ 1.49
SHKBP1-204ENST00000594862 MAP2P11137 1827 aaKnown RBP24.33■■□□□ 1.48
SHKBP1-204ENST00000594862 NUP188Q5SRE5 1749 aa24.32■■□□□ 1.48
SHKBP1-204ENST00000594862 PLSCR1O15162 318 aa24.32■■□□□ 1.48
SHKBP1-204ENST00000594862 KNSTRNQ9Y448 316 aa24.32■■□□□ 1.48
SHKBP1-204ENST00000594862 EMILIN1Q9Y6C2 1016 aa24.32■■□□□ 1.48
SHKBP1-204ENST00000594862 RAPGEF4Q8WZA2 1011 aa24.31■■□□□ 1.48
SHKBP1-204ENST00000594862 WASHC2AQ641Q2 1341 aa24.31■■□□□ 1.48
SHKBP1-204ENST00000594862 MEGF6O75095 1541 aa24.3■■□□□ 1.48
SHKBP1-204ENST00000594862 PPM1GO15355 546 aaPredicted RBP24.29■■□□□ 1.48
SHKBP1-204ENST00000594862 NBPF14Q5TI25 921 aa24.29■■□□□ 1.48
SHKBP1-204ENST00000594862 NBPF6Q5VWK0 638 aa24.29■■□□□ 1.48
SHKBP1-204ENST00000594862 NBPF4Q96M43 638 aa24.29■■□□□ 1.48
SHKBP1-204ENST00000594862 ZCRB1Q8TBF4 217 aaKnown RBP24.27■■□□□ 1.48
SHKBP1-204ENST00000594862 POLKQ9UBT6 870 aa24.27■■□□□ 1.48
SHKBP1-204ENST00000594862 NCAPD2Q15021 1401 aa24.27■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms