RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 AXIN2Q9Y2T1 843 aa20.68■□□□□ 0.9
UPF1-202ENST00000594243 LARP1Q6PKG0 1096 aaKnown RBP20.67■□□□□ 0.9
UPF1-202ENST00000594243 SPATA31A1Q5TZJ5 1347 aa20.67■□□□□ 0.9
UPF1-202ENST00000594243 COL5A2P05997 1499 aaPredicted RBP20.66■□□□□ 0.9
UPF1-202ENST00000594243 FAM98CQ17RN3 349 aaKnown RBP20.65■□□□□ 0.9
UPF1-202ENST00000594243 SEPT12Q8IYM1 358 aa20.65■□□□□ 0.9
UPF1-202ENST00000594243 COL18A1P39060 1754 aa20.64■□□□□ 0.9
UPF1-202ENST00000594243 ABCC6O95255 1503 aa20.64■□□□□ 0.9
UPF1-202ENST00000594243 USP35Q9P2H5 1018 aa20.64■□□□□ 0.89
UPF1-202ENST00000594243 THRAP3Q9Y2W1 955 aaKnown RBP20.64■□□□□ 0.89
UPF1-202ENST00000594243 CCDC7Q96M83 1385 aa20.63■□□□□ 0.89
UPF1-202ENST00000594243 WASHC2AQ641Q2 1341 aa20.63■□□□□ 0.89
UPF1-202ENST00000594243 A0A0G2JS52 829 aa20.63■□□□□ 0.89
UPF1-202ENST00000594243 CSB-PGBD3P0DP91 1061 aa20.63■□□□□ 0.89
UPF1-202ENST00000594243 MYT1Q01538 1121 aa20.63■□□□□ 0.89
UPF1-202ENST00000594243 TOM1L2Q6ZVM7 507 aa20.63■□□□□ 0.89
UPF1-202ENST00000594243 KNSTRNQ9Y448 316 aa20.63■□□□□ 0.89
UPF1-202ENST00000594243 CRB1P82279 1406 aa20.62■□□□□ 0.89
UPF1-202ENST00000594243 KIF20BQ96Q89 1820 aa20.62■□□□□ 0.89
UPF1-202ENST00000594243 WDR17Q8IZU2 1322 aa20.62■□□□□ 0.89
UPF1-202ENST00000594243 AMPHP49418 695 aa20.62■□□□□ 0.89
UPF1-202ENST00000594243 BARGINQ6ZT62 677 aa20.62■□□□□ 0.89
UPF1-202ENST00000594243 TCP11L2Q8N4U5 519 aa20.62■□□□□ 0.89
UPF1-202ENST00000594243 IP6K1Q92551 441 aa20.62■□□□□ 0.89
UPF1-202ENST00000594243 FBLN1P23142 703 aa20.61■□□□□ 0.89
UPF1-202ENST00000594243 MAP3K19Q56UN5 1328 aa20.6■□□□□ 0.89
UPF1-202ENST00000594243 LTN1O94822 1766 aa20.59■□□□□ 0.89
UPF1-202ENST00000594243 UPF1Q92900 1129 aaKnown RBP eCLIP20.59■□□□□ 0.89
UPF1-202ENST00000594243 BLMP54132 1417 aaPredicted RBP20.59■□□□□ 0.89
UPF1-202ENST00000594243 NSD2O96028 1365 aa20.59■□□□□ 0.89
UPF1-202ENST00000594243 RRS1Q15050 365 aaKnown RBP20.58■□□□□ 0.89
UPF1-202ENST00000594243 KRT27Q7Z3Y8 459 aa20.58■□□□□ 0.89
UPF1-202ENST00000594243 ANKRD24Q8TF21 1146 aa20.58■□□□□ 0.89
UPF1-202ENST00000594243 CARD10Q9BWT7 1032 aa20.58■□□□□ 0.89
UPF1-202ENST00000594243 ERBB3P21860 1342 aa20.57■□□□□ 0.88
UPF1-202ENST00000594243 HOXC9P31274 260 aa20.57■□□□□ 0.88
UPF1-202ENST00000594243 RGPD5Q99666 1765 aa20.56■□□□□ 0.88
UPF1-202ENST00000594243 RTL1A6NKG5 1358 aa20.56■□□□□ 0.88
UPF1-202ENST00000594243 PER1O15534 1290 aaPredicted RBP20.55■□□□□ 0.88
UPF1-202ENST00000594243 KIF24Q5T7B8 1368 aa20.55■□□□□ 0.88
UPF1-202ENST00000594243 MORC1Q86VD1 984 aa20.54■□□□□ 0.88
UPF1-202ENST00000594243 CDCA7Q9BWT1 371 aaPredicted RBP20.54■□□□□ 0.88
UPF1-202ENST00000594243 NLRP2Q9NX02 1062 aa20.54■□□□□ 0.88
UPF1-202ENST00000594243 LTV1Q96GA3 475 aaPredicted RBP20.53■□□□□ 0.88
UPF1-202ENST00000594243 THSD7AQ9UPZ6 1657 aa20.52■□□□□ 0.88
UPF1-202ENST00000594243 AMER1Q5JTC6 1135 aaPredicted RBP20.52■□□□□ 0.88
UPF1-202ENST00000594243 FLT4P35916 1363 aa20.51■□□□□ 0.87
UPF1-202ENST00000594243 TNNT2P45379 298 aaPredicted RBP20.51■□□□□ 0.87
UPF1-202ENST00000594243 PDE3BQ13370 1112 aa20.51■□□□□ 0.87
UPF1-202ENST00000594243 INSRP06213 1382 aa20.5■□□□□ 0.87
UPF1-202ENST00000594243 PPM1GO15355 546 aaPredicted RBP20.5■□□□□ 0.87
UPF1-202ENST00000594243 EMILIN1Q9Y6C2 1016 aa20.5■□□□□ 0.87
UPF1-202ENST00000594243 BRWD3Q6RI45 1802 aa20.5■□□□□ 0.87
UPF1-202ENST00000594243 ANKRD26Q9UPS8 1709 aa20.5■□□□□ 0.87
UPF1-202ENST00000594243 HSP90AB2PQ58FF8 381 aa20.49■□□□□ 0.87
UPF1-202ENST00000594243 CCDC125Q86Z20 511 aa20.49■□□□□ 0.87
UPF1-202ENST00000594243 POLKQ9UBT6 870 aa20.49■□□□□ 0.87
UPF1-202ENST00000594243 SMG6Q86US8 1419 aaKnown RBP20.48■□□□□ 0.87
UPF1-202ENST00000594243 DDB1Q16531 1140 aa20.48■□□□□ 0.87
UPF1-202ENST00000594243 EXOC5O00471 708 aa20.46■□□□□ 0.87
UPF1-202ENST00000594243 IL2RBP14784 551 aa20.46■□□□□ 0.87
UPF1-202ENST00000594243 CC2D1BQ5T0F9 858 aaKnown RBP20.45■□□□□ 0.86
UPF1-202ENST00000594243 FAM196AQ6ZSG2 479 aa20.45■□□□□ 0.86
UPF1-202ENST00000594243 NPC1L1Q9UHC9 1359 aa20.45■□□□□ 0.86
UPF1-202ENST00000594243 FAM208AQ9UK61 1670 aaKnown RBP20.45■□□□□ 0.86
UPF1-202ENST00000594243 PARP4Q9UKK3 1724 aaKnown RBP20.44■□□□□ 0.86
UPF1-202ENST00000594243 MAP2P11137 1827 aaKnown RBP20.43■□□□□ 0.86
UPF1-202ENST00000594243 FAM182BQ5T319 152 aa20.43■□□□□ 0.86
UPF1-202ENST00000594243 PEAK1Q9H792 1746 aa20.43■□□□□ 0.86
UPF1-202ENST00000594243 DISP2A7MBM2 1401 aa20.43■□□□□ 0.86
UPF1-202ENST00000594243 EP400Q96L91 3159 aa20.42■□□□□ 0.86
UPF1-202ENST00000594243 SF3B2Q13435 895 aaKnown RBP20.42■□□□□ 0.86
UPF1-202ENST00000594243 NBPF6Q5VWK0 638 aa20.42■□□□□ 0.86
UPF1-202ENST00000594243 NBPF4Q96M43 638 aa20.42■□□□□ 0.86
UPF1-202ENST00000594243 CNGB1Q14028 1251 aaPredicted RBP20.39■□□□□ 0.85
UPF1-202ENST00000594243 WNK3Q9BYP7 1800 aa20.39■□□□□ 0.85
UPF1-202ENST00000594243 LRRC37A3O60309 1634 aa20.38■□□□□ 0.85
UPF1-202ENST00000594243 RAPGEF4Q8WZA2 1011 aa20.37■□□□□ 0.85
UPF1-202ENST00000594243 MTHFSP49914 203 aa20.36■□□□□ 0.85
UPF1-202ENST00000594243 EIF4A2Q14240 407 aaKnown RBP20.36■□□□□ 0.85
UPF1-202ENST00000594243 USHBP1Q8N6Y0 703 aa20.36■□□□□ 0.85
UPF1-202ENST00000594243 MARCH10Q8NA82 808 aaPredicted RBP20.36■□□□□ 0.85
UPF1-202ENST00000594243 OVOS2A0A0G2JMS6 1433 aa20.36■□□□□ 0.85
UPF1-202ENST00000594243 TNS2Q63HR2 1409 aa20.36■□□□□ 0.85
UPF1-202ENST00000594243 TATP17735 454 aaPredicted RBP20.35■□□□□ 0.85
UPF1-202ENST00000594243 EYA1Q99502 592 aa20.35■□□□□ 0.85
UPF1-202ENST00000594243 RGPD2P0DJD1 1756 aa20.34■□□□□ 0.85
UPF1-202ENST00000594243 TRIM37O94972 964 aa20.33■□□□□ 0.85
UPF1-202ENST00000594243 DDX10Q13206 875 aaKnown RBP20.33■□□□□ 0.85
UPF1-202ENST00000594243 ZCRB1Q8TBF4 217 aaKnown RBP20.33■□□□□ 0.85
UPF1-202ENST00000594243 BAG6P46379 1132 aa20.32■□□□□ 0.84
UPF1-202ENST00000594243 BCL9O00512 1426 aa20.31■□□□□ 0.84
UPF1-202ENST00000594243 DDX54Q8TDD1 881 aaKnown RBP20.31■□□□□ 0.84
UPF1-202ENST00000594243 NCAPD2Q15021 1401 aa20.29■□□□□ 0.84
UPF1-202ENST00000594243 MEGF6O75095 1541 aa20.29■□□□□ 0.84
UPF1-202ENST00000594243 RGPD1P0DJD0 1748 aa20.29■□□□□ 0.84
UPF1-202ENST00000594243 IGSF1Q8N6C5 1336 aa20.28■□□□□ 0.84
UPF1-202ENST00000594243 APBA3O96018 575 aa20.28■□□□□ 0.84
UPF1-202ENST00000594243 IL13P35225 146 aa20.28■□□□□ 0.84
UPF1-202ENST00000594243 DEFB132Q7Z7B7 95 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms