RNA–Protein interactions for RNA: ENST00000580287.5

CDK5RAP3-217, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,609 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-217ENST00000580287 MSH5O43196 834 aa16.66■□□□□ 0.26
CDK5RAP3-217ENST00000580287 LTV1Q96GA3 475 aaPredicted RBP16.66■□□□□ 0.26
CDK5RAP3-217ENST00000580287 ERICH6BQ5W0A0 696 aa16.66■□□□□ 0.26
CDK5RAP3-217ENST00000580287 PLEKHF1Q96S99 279 aa16.66■□□□□ 0.26
CDK5RAP3-217ENST00000580287 SPINK5Q9NQ38 1064 aaPredicted RBP16.66■□□□□ 0.26
CDK5RAP3-217ENST00000580287 AEBP1Q8IUX7 1158 aa16.66■□□□□ 0.26
CDK5RAP3-217ENST00000580287 PODXL2Q9NZ53 605 aa16.66■□□□□ 0.26
CDK5RAP3-217ENST00000580287 GCP02774 474 aa16.65■□□□□ 0.26
CDK5RAP3-217ENST00000580287 PRKAR2BP31323 418 aa16.65■□□□□ 0.26
CDK5RAP3-217ENST00000580287 PHACTR3Q96KR7 559 aa16.65■□□□□ 0.26
CDK5RAP3-217ENST00000580287 INSRP06213 1382 aa16.64■□□□□ 0.25
CDK5RAP3-217ENST00000580287 HOMEZQ8IX15 550 aa16.64■□□□□ 0.25
CDK5RAP3-217ENST00000580287 NPHP3Q7Z494 1330 aa16.63■□□□□ 0.25
CDK5RAP3-217ENST00000580287 ZC3H6P61129 1189 aaKnown RBP16.63■□□□□ 0.25
CDK5RAP3-217ENST00000580287 CDK12Q9NYV4 1490 aaPredicted RBP16.63■□□□□ 0.25
CDK5RAP3-217ENST00000580287 RSPH6AQ9H0K4 717 aa16.63■□□□□ 0.25
CDK5RAP3-217ENST00000580287 HOXC9P31274 260 aa16.62■□□□□ 0.25
CDK5RAP3-217ENST00000580287 SULT6B1Q6IMI4 303 aa16.62■□□□□ 0.25
CDK5RAP3-217ENST00000580287 ZNF521Q96K83 1311 aa16.62■□□□□ 0.25
CDK5RAP3-217ENST00000580287 WWC1Q8IX03 1113 aa16.61■□□□□ 0.25
CDK5RAP3-217ENST00000580287 PEAK1Q9H792 1746 aa16.61■□□□□ 0.25
CDK5RAP3-217ENST00000580287 SBNO1A3KN83 1393 aa16.6■□□□□ 0.25
CDK5RAP3-217ENST00000580287 FCHSD2O94868 740 aa16.6■□□□□ 0.25
CDK5RAP3-217ENST00000580287 MAPK8IP3Q9UPT6 1336 aa16.6■□□□□ 0.25
CDK5RAP3-217ENST00000580287 FLT4P35916 1363 aa16.59■□□□□ 0.25
CDK5RAP3-217ENST00000580287 TMPOP42166 694 aaKnown RBP16.59■□□□□ 0.25
CDK5RAP3-217ENST00000580287 GOLGA2Q08379 1002 aa16.59■□□□□ 0.25
CDK5RAP3-217ENST00000580287 EYA1Q99502 592 aa16.59■□□□□ 0.25
CDK5RAP3-217ENST00000580287 MARF1Q9Y4F3 1742 aaKnown RBP16.59■□□□□ 0.25
CDK5RAP3-217ENST00000580287 USHBP1Q8N6Y0 703 aa16.58■□□□□ 0.25
CDK5RAP3-217ENST00000580287 AXIN2Q9Y2T1 843 aa16.58■□□□□ 0.25
CDK5RAP3-217ENST00000580287 KCNH5Q8NCM2 988 aa16.58■□□□□ 0.24
CDK5RAP3-217ENST00000580287 SPATA31A3Q5VYP0 1347 aa16.57■□□□□ 0.24
CDK5RAP3-217ENST00000580287 RIPK4P57078 832 aa16.57■□□□□ 0.24
CDK5RAP3-217ENST00000580287 PDE3BQ13370 1112 aa16.57■□□□□ 0.24
CDK5RAP3-217ENST00000580287 RCAN3Q9UKA8 241 aa16.57■□□□□ 0.24
CDK5RAP3-217ENST00000580287 FANCIQ9NVI1 1328 aa16.56■□□□□ 0.24
CDK5RAP3-217ENST00000580287 CHRNA2Q15822 529 aa16.56■□□□□ 0.24
CDK5RAP3-217ENST00000580287 ARHGEF25Q86VW2 580 aa16.56■□□□□ 0.24
CDK5RAP3-217ENST00000580287 PXDNQ92626 1479 aa16.56■□□□□ 0.24
CDK5RAP3-217ENST00000580287 DUSP27Q5VZP5 1158 aa16.56■□□□□ 0.24
CDK5RAP3-217ENST00000580287 THUMPD2Q9BTF0 503 aaKnown RBP16.56■□□□□ 0.24
CDK5RAP3-217ENST00000580287 TRIM35Q9UPQ4 493 aa16.56■□□□□ 0.24
CDK5RAP3-217ENST00000580287 IP6K1Q92551 441 aa16.55■□□□□ 0.24
CDK5RAP3-217ENST00000580287 LRRC59Q96AG4 307 aaKnown RBP16.55■□□□□ 0.24
CDK5RAP3-217ENST00000580287 IQSEC2Q5JU85 1478 aa16.55■□□□□ 0.24
CDK5RAP3-217ENST00000580287 USP19O94966 1318 aa16.55■□□□□ 0.24
CDK5RAP3-217ENST00000580287 KIF1AQ12756 1690 aa16.55■□□□□ 0.24
CDK5RAP3-217ENST00000580287 SLFN5Q08AF3 891 aa16.55■□□□□ 0.24
CDK5RAP3-217ENST00000580287 TRPM3Q9HCF6 1732 aaPredicted RBP16.55■□□□□ 0.24
CDK5RAP3-217ENST00000580287 LTBP4Q8N2S1 1624 aa16.54■□□□□ 0.24
CDK5RAP3-217ENST00000580287 SOS2Q07890 1332 aaPredicted RBP16.54■□□□□ 0.24
CDK5RAP3-217ENST00000580287 RNF123Q5XPI4 1314 aa16.54■□□□□ 0.24
CDK5RAP3-217ENST00000580287 PIP4K2BP78356 416 aa16.54■□□□□ 0.24
CDK5RAP3-217ENST00000580287 CCDC136Q96JN2 1154 aa16.54■□□□□ 0.24
CDK5RAP3-217ENST00000580287 NFAT5O94916 1531 aa16.54■□□□□ 0.24
CDK5RAP3-217ENST00000580287 TNS3Q68CZ2 1445 aa16.53■□□□□ 0.24
CDK5RAP3-217ENST00000580287 FAM83GA6ND36 823 aa16.53■□□□□ 0.24
CDK5RAP3-217ENST00000580287 DCTN1Q14203 1278 aa16.53■□□□□ 0.24
CDK5RAP3-217ENST00000580287 RRP1P56182 461 aaKnown RBP16.52■□□□□ 0.24
CDK5RAP3-217ENST00000580287 NBPF6Q5VWK0 638 aa16.52■□□□□ 0.24
CDK5RAP3-217ENST00000580287 NBPF4Q96M43 638 aa16.52■□□□□ 0.24
CDK5RAP3-217ENST00000580287 MED1Q15648 1581 aaPredicted RBP16.52■□□□□ 0.24
CDK5RAP3-217ENST00000580287 NEFMP07197 916 aa16.52■□□□□ 0.23
CDK5RAP3-217ENST00000580287 PNNQ9H307 717 aaKnown RBP16.51■□□□□ 0.23
CDK5RAP3-217ENST00000580287 NFE2L2Q16236 605 aa16.5■□□□□ 0.23
CDK5RAP3-217ENST00000580287 TSR2Q969E8 191 aaKnown RBP16.5■□□□□ 0.23
CDK5RAP3-217ENST00000580287 TRMT2AQ8IZ69 625 aaKnown RBP16.49■□□□□ 0.23
CDK5RAP3-217ENST00000580287 IGSF1Q8N6C5 1336 aa16.49■□□□□ 0.23
CDK5RAP3-217ENST00000580287 PLIN1O60240 522 aa16.49■□□□□ 0.23
CDK5RAP3-217ENST00000580287 ANKRD24Q8TF21 1146 aa16.49■□□□□ 0.23
CDK5RAP3-217ENST00000580287 ALS2Q96Q42 1657 aa16.49■□□□□ 0.23
CDK5RAP3-217ENST00000580287 E9PSI1 815 aa16.49■□□□□ 0.23
CDK5RAP3-217ENST00000580287 HAP1P54257 671 aaPredicted RBP16.49■□□□□ 0.23
CDK5RAP3-217ENST00000580287 CCDC27Q2M243 656 aa16.49■□□□□ 0.23
CDK5RAP3-217ENST00000580287 EXOC6Q8TAG9 804 aa16.49■□□□□ 0.23
CDK5RAP3-217ENST00000580287 LAS1LQ9Y4W2 734 aaKnown RBP16.49■□□□□ 0.23
CDK5RAP3-217ENST00000580287 KIAA0232Q92628 1395 aa16.48■□□□□ 0.23
CDK5RAP3-217ENST00000580287 SLIT3O75094 1523 aa16.48■□□□□ 0.23
CDK5RAP3-217ENST00000580287 MTHFSDQ2M296 383 aaKnown RBP16.48■□□□□ 0.23
CDK5RAP3-217ENST00000580287 NGEFQ8N5V2 710 aa16.47■□□□□ 0.23
CDK5RAP3-217ENST00000580287 MCM10Q7L590 875 aa16.47■□□□□ 0.23
CDK5RAP3-217ENST00000580287 WDR63Q8IWG1 891 aa16.47■□□□□ 0.23
CDK5RAP3-217ENST00000580287 USP54Q70EL1 1684 aa16.46■□□□□ 0.23
CDK5RAP3-217ENST00000580287 ARHGEF10O15013 1369 aa16.46■□□□□ 0.23
CDK5RAP3-217ENST00000580287 LTN1O94822 1766 aa16.46■□□□□ 0.23
CDK5RAP3-217ENST00000580287 KIF24Q5T7B8 1368 aa16.46■□□□□ 0.23
CDK5RAP3-217ENST00000580287 RTL1A6NKG5 1358 aa16.45■□□□□ 0.22
CDK5RAP3-217ENST00000580287 UBAP1LF5GYI3 381 aa16.45■□□□□ 0.22
CDK5RAP3-217ENST00000580287 SKAP1Q86WV1 359 aa16.44■□□□□ 0.22
CDK5RAP3-217ENST00000580287 PRDM11Q9NQV5 511 aa16.44■□□□□ 0.22
CDK5RAP3-217ENST00000580287 KDRP35968 1356 aa16.44■□□□□ 0.22
CDK5RAP3-217ENST00000580287 NLRP2Q9NX02 1062 aa16.43■□□□□ 0.22
CDK5RAP3-217ENST00000580287 ERBB3P21860 1342 aa16.43■□□□□ 0.22
CDK5RAP3-217ENST00000580287 CSB-PGBD3P0DP91 1061 aa16.43■□□□□ 0.22
CDK5RAP3-217ENST00000580287 BCAR3O75815 825 aa16.42■□□□□ 0.22
CDK5RAP3-217ENST00000580287 RGPD1P0DJD0 1748 aa16.42■□□□□ 0.22
CDK5RAP3-217ENST00000580287 TOM1O60784 492 aa16.42■□□□□ 0.22
CDK5RAP3-217ENST00000580287 ROBO1Q9Y6N7 1651 aa16.42■□□□□ 0.22
CDK5RAP3-217ENST00000580287 BCL2L13Q9BXK5 485 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms