RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 NOB1Q9ULX3 412 aaKnown RBP12.87□□□□□ -0.35
VPS53-220ENST00000576149 C3P01024 1663 aa12.86□□□□□ -0.35
VPS53-220ENST00000576149 UBE2Q2Q8WVN8 375 aa12.86□□□□□ -0.35
VPS53-220ENST00000576149 DDX19BQ9UMR2 479 aa12.86□□□□□ -0.35
VPS53-220ENST00000576149 PDZRN3Q9UPQ7 1066 aa12.86□□□□□ -0.35
VPS53-220ENST00000576149 KIF16BQ96L93 1317 aa12.86□□□□□ -0.35
VPS53-220ENST00000576149 LTKP29376 864 aa12.86□□□□□ -0.35
VPS53-220ENST00000576149 VIRMAQ69YN4 1812 aaKnown RBP12.85□□□□□ -0.35
VPS53-220ENST00000576149 CALD1Q05682 793 aaKnown RBP12.85□□□□□ -0.35
VPS53-220ENST00000576149 ZNF428Q96B54 188 aa12.85□□□□□ -0.35
VPS53-220ENST00000576149 ITSN1Q15811 1721 aa12.85□□□□□ -0.35
VPS53-220ENST00000576149 IPO8O15397 1037 aaKnown RBP12.84□□□□□ -0.35
VPS53-220ENST00000576149 RTL5Q5HYW3 569 aaPredicted RBP12.84□□□□□ -0.35
VPS53-220ENST00000576149 LAS1LQ9Y4W2 734 aaKnown RBP12.84□□□□□ -0.35
VPS53-220ENST00000576149 BRPF1P55201 1214 aaPredicted RBP12.84□□□□□ -0.35
VPS53-220ENST00000576149 RRS1Q15050 365 aaKnown RBP12.84□□□□□ -0.35
VPS53-220ENST00000576149 ITPRIPQ8IWB1 547 aa12.84□□□□□ -0.35
VPS53-220ENST00000576149 USP19O94966 1318 aa12.84□□□□□ -0.35
VPS53-220ENST00000576149 HDAC1Q13547 482 aaPredicted RBP12.83□□□□□ -0.35
VPS53-220ENST00000576149 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.83□□□□□ -0.36
VPS53-220ENST00000576149 TMEM57Q8N5G2 664 aa12.83□□□□□ -0.36
VPS53-220ENST00000576149 IFT57Q9NWB7 429 aa12.83□□□□□ -0.36
VPS53-220ENST00000576149 PLEKHG3A1L390 1219 aa12.82□□□□□ -0.36
VPS53-220ENST00000576149 DEKP35659 375 aaKnown RBP12.82□□□□□ -0.36
VPS53-220ENST00000576149 TTC21BQ7Z4L5 1316 aa12.82□□□□□ -0.36
VPS53-220ENST00000576149 ZNF853P0CG23 659 aa12.82□□□□□ -0.36
VPS53-220ENST00000576149 GNAI1P63096 354 aa12.82□□□□□ -0.36
VPS53-220ENST00000576149 USP35Q9P2H5 1018 aa12.82□□□□□ -0.36
VPS53-220ENST00000576149 SEC24BO95487 1268 aa12.81□□□□□ -0.36
VPS53-220ENST00000576149 SLC4A3P48751 1232 aa12.81□□□□□ -0.36
VPS53-220ENST00000576149 THUMPD2Q9BTF0 503 aaKnown RBP12.81□□□□□ -0.36
VPS53-220ENST00000576149 ZBTB40Q9NUA8 1239 aa12.81□□□□□ -0.36
VPS53-220ENST00000576149 TOPAZ1Q8N9V7 1692 aa12.81□□□□□ -0.36
VPS53-220ENST00000576149 ACEP12821 1306 aa12.81□□□□□ -0.36
VPS53-220ENST00000576149 VAMP4O75379 141 aa12.81□□□□□ -0.36
VPS53-220ENST00000576149 CEBPAP49715 358 aaPredicted RBP12.81□□□□□ -0.36
VPS53-220ENST00000576149 LMOD3Q0VAK6 560 aa12.81□□□□□ -0.36
VPS53-220ENST00000576149 NRKQ7Z2Y5 1582 aa12.81□□□□□ -0.36
VPS53-220ENST00000576149 PTPRUQ92729 1446 aa12.81□□□□□ -0.36
VPS53-220ENST00000576149 SLC26A8Q96RN1 970 aa12.8□□□□□ -0.36
VPS53-220ENST00000576149 EID1Q9Y6B2 187 aa12.8□□□□□ -0.36
VPS53-220ENST00000576149 OVOS2A0A0J9YW53 1432 aa12.8□□□□□ -0.36
VPS53-220ENST00000576149 OVOS2Q6IE36 1432 aa12.8□□□□□ -0.36
VPS53-220ENST00000576149 MBIPQ9NS73 344 aa12.79□□□□□ -0.36
VPS53-220ENST00000576149 SLIT1O75093 1534 aa12.79□□□□□ -0.36
VPS53-220ENST00000576149 USP6P35125 1406 aa12.79□□□□□ -0.36
VPS53-220ENST00000576149 ARHGAP23Q9P227 1491 aa12.79□□□□□ -0.36
VPS53-220ENST00000576149 SMC5Q8IY18 1101 aa12.79□□□□□ -0.36
VPS53-220ENST00000576149 MRPL50Q8N5N7 158 aaKnown RBP12.79□□□□□ -0.36
VPS53-220ENST00000576149 ARHGAP45Q92619 1136 aa12.79□□□□□ -0.36
VPS53-220ENST00000576149 CFAP44Q96MT7 982 aa12.79□□□□□ -0.36
VPS53-220ENST00000576149 TSPYL6Q8N831 410 aa12.78□□□□□ -0.36
VPS53-220ENST00000576149 EIF4A2Q14240 407 aaKnown RBP12.78□□□□□ -0.36
VPS53-220ENST00000576149 TBX22Q9Y458 520 aa12.78□□□□□ -0.36
VPS53-220ENST00000576149 SSH2Q76I76 1423 aa12.77□□□□□ -0.36
VPS53-220ENST00000576149 NUTM2FA1L443 756 aa12.77□□□□□ -0.37
VPS53-220ENST00000576149 AMOTL2Q9Y2J4 779 aa12.77□□□□□ -0.37
VPS53-220ENST00000576149 USP31Q70CQ4 1352 aa12.77□□□□□ -0.37
VPS53-220ENST00000576149 PIK3R4Q99570 1358 aa12.77□□□□□ -0.37
VPS53-220ENST00000576149 PTCH1Q13635 1447 aa12.77□□□□□ -0.37
VPS53-220ENST00000576149 DLG5Q8TDM6 1919 aa12.76□□□□□ -0.37
VPS53-220ENST00000576149 FAM83GA6ND36 823 aa12.76□□□□□ -0.37
VPS53-220ENST00000576149 TWISTNBQ3B726 338 aaPredicted RBP12.76□□□□□ -0.37
VPS53-220ENST00000576149 NALCNQ8IZF0 1738 aa12.75□□□□□ -0.37
VPS53-220ENST00000576149 ZBTB7BO15156 539 aaPredicted RBP12.75□□□□□ -0.37
VPS53-220ENST00000576149 SULT6B1Q6IMI4 303 aa12.75□□□□□ -0.37
VPS53-220ENST00000576149 AEBP1Q8IUX7 1158 aa12.75□□□□□ -0.37
VPS53-220ENST00000576149 UPF2Q9HAU5 1272 aaKnown RBP12.75□□□□□ -0.37
VPS53-220ENST00000576149 ELL2O00472 640 aaPredicted RBP12.74□□□□□ -0.37
VPS53-220ENST00000576149 C8orf58Q8NAV2 365 aa12.74□□□□□ -0.37
VPS53-220ENST00000576149 CHMP4BQ9H444 224 aaKnown RBP12.74□□□□□ -0.37
VPS53-220ENST00000576149 DCTN1Q14203 1278 aa12.74□□□□□ -0.37
VPS53-220ENST00000576149 TBC1D32Q96NH3 1257 aa12.74□□□□□ -0.37
VPS53-220ENST00000576149 TTC21AQ8NDW8 1320 aa12.74□□□□□ -0.37
VPS53-220ENST00000576149 ABCC4O15439 1325 aa12.73□□□□□ -0.37
VPS53-220ENST00000576149 HSP90AB2PQ58FF8 381 aa12.73□□□□□ -0.37
VPS53-220ENST00000576149 THEMISQ8N1K5 641 aaPredicted RBP12.73□□□□□ -0.37
VPS53-220ENST00000576149 PEAK1Q9H792 1746 aa12.73□□□□□ -0.37
VPS53-220ENST00000576149 NUCB1Q02818 461 aa12.73□□□□□ -0.37
VPS53-220ENST00000576149 DIP2AQ14689 1571 aa12.73□□□□□ -0.37
VPS53-220ENST00000576149 NFKBIBQ15653 356 aa12.72□□□□□ -0.37
VPS53-220ENST00000576149 RGPD1P0DJD0 1748 aa12.72□□□□□ -0.37
VPS53-220ENST00000576149 PLCB2Q00722 1185 aa12.71□□□□□ -0.37
VPS53-220ENST00000576149 BECN1Q14457 450 aa12.71□□□□□ -0.37
VPS53-220ENST00000576149 FER1L4A9Z1Z3 1794 aa12.71□□□□□ -0.37
VPS53-220ENST00000576149 API5Q9BZZ5 524 aaKnown RBP12.71□□□□□ -0.38
VPS53-220ENST00000576149 MAP3K19Q56UN5 1328 aa12.7□□□□□ -0.38
VPS53-220ENST00000576149 CHL1O00533 1208 aa12.7□□□□□ -0.38
VPS53-220ENST00000576149 NGDNQ8NEJ9 315 aaKnown RBP12.7□□□□□ -0.38
VPS53-220ENST00000576149 ARHGEF10O15013 1369 aa12.7□□□□□ -0.38
VPS53-220ENST00000576149 CHD1LQ86WJ1 897 aa12.69□□□□□ -0.38
VPS53-220ENST00000576149 GCC1Q96CN9 775 aa12.69□□□□□ -0.38
VPS53-220ENST00000576149 XRN1Q8IZH2 1706 aaKnown RBP12.69□□□□□ -0.38
VPS53-220ENST00000576149 HAP1P54257 671 aaPredicted RBP12.69□□□□□ -0.38
VPS53-220ENST00000576149 SBNO1A3KN83 1393 aa12.69□□□□□ -0.38
VPS53-220ENST00000576149 KIF24Q5T7B8 1368 aa12.69□□□□□ -0.38
VPS53-220ENST00000576149 SOX12O15370 315 aa12.68□□□□□ -0.38
VPS53-220ENST00000576149 TMEM132AQ24JP5 1023 aa12.68□□□□□ -0.38
VPS53-220ENST00000576149 MCM10Q7L590 875 aa12.68□□□□□ -0.38
VPS53-220ENST00000576149 LNPKQ9C0E8 428 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms