RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 CHRNA2Q15822 529 aa28.45■■■□□ 2.14
VPS53-210ENST00000571456 BARGINQ6ZT62 677 aa28.45■■■□□ 2.14
VPS53-210ENST00000571456 USP35Q9P2H5 1018 aa28.45■■■□□ 2.14
VPS53-210ENST00000571456 EDC4Q6P2E9 1401 aaKnown RBP28.44■■■□□ 2.14
VPS53-210ENST00000571456 SSH2Q76I76 1423 aa28.44■■■□□ 2.14
VPS53-210ENST00000571456 PAK3O75914 559 aaPredicted RBP28.44■■■□□ 2.14
VPS53-210ENST00000571456 A0A1W2PP64 1363 aa28.44■■■□□ 2.14
VPS53-210ENST00000571456 NRKQ7Z2Y5 1582 aa28.44■■■□□ 2.14
VPS53-210ENST00000571456 IFFO2Q5TF58 517 aa28.43■■■□□ 2.14
VPS53-210ENST00000571456 KIF7Q2M1P5 1343 aa28.43■■■□□ 2.14
VPS53-210ENST00000571456 CHD4Q14839 1912 aa28.41■■■□□ 2.14
VPS53-210ENST00000571456 C11orf95C9JLR9 678 aaPredicted RBP28.4■■■□□ 2.14
VPS53-210ENST00000571456 CCDC7Q96M83 1385 aa28.39■■■□□ 2.14
VPS53-210ENST00000571456 POLR3GLQ9BT43 218 aa28.39■■■□□ 2.14
VPS53-210ENST00000571456 PHRF1Q9P1Y6 1649 aaKnown RBP28.39■■■□□ 2.13
VPS53-210ENST00000571456 TTC21BQ7Z4L5 1316 aa28.39■■■□□ 2.13
VPS53-210ENST00000571456 EVA1CP58658 441 aa28.38■■■□□ 2.13
VPS53-210ENST00000571456 CASZ1Q86V15 1759 aa28.37■■■□□ 2.13
VPS53-210ENST00000571456 ABTB2Q8N961 1025 aa28.37■■■□□ 2.13
VPS53-210ENST00000571456 RGPD3A6NKT7 1758 aaPredicted RBP28.37■■■□□ 2.13
VPS53-210ENST00000571456 RGPD4Q7Z3J3 1758 aa28.37■■■□□ 2.13
VPS53-210ENST00000571456 ZC3H6P61129 1189 aaKnown RBP28.36■■■□□ 2.13
VPS53-210ENST00000571456 C1QTNF8P60827 252 aa28.35■■■□□ 2.13
VPS53-210ENST00000571456 NLRP13Q86W25 1043 aa28.35■■■□□ 2.13
VPS53-210ENST00000571456 TCP11L2Q8N4U5 519 aa28.35■■■□□ 2.13
VPS53-210ENST00000571456 USP54Q70EL1 1684 aa28.34■■■□□ 2.13
VPS53-210ENST00000571456 WASHC2AQ641Q2 1341 aa28.34■■■□□ 2.13
VPS53-210ENST00000571456 PIK3C2AO00443 1686 aa28.32■■■□□ 2.12
VPS53-210ENST00000571456 LARP1Q6PKG0 1096 aaKnown RBP28.31■■■□□ 2.12
VPS53-210ENST00000571456 USP31Q70CQ4 1352 aa28.31■■■□□ 2.12
VPS53-210ENST00000571456 PARP4Q9UKK3 1724 aaKnown RBP28.31■■■□□ 2.12
VPS53-210ENST00000571456 ANO8Q9HCE9 1232 aaPredicted RBP28.3■■■□□ 2.12
VPS53-210ENST00000571456 SBF2Q86WG5 1849 aa28.29■■■□□ 2.12
VPS53-210ENST00000571456 PLSCR1O15162 318 aa28.29■■■□□ 2.12
VPS53-210ENST00000571456 USP19O94966 1318 aa28.28■■■□□ 2.12
VPS53-210ENST00000571456 NLRP6P59044 892 aa28.28■■■□□ 2.12
VPS53-210ENST00000571456 THRAP3Q9Y2W1 955 aaKnown RBP28.28■■■□□ 2.12
VPS53-210ENST00000571456 ZBTB7AO95365 584 aa28.27■■■□□ 2.12
VPS53-210ENST00000571456 PDGFDQ9GZP0 370 aaPredicted RBP28.27■■■□□ 2.12
VPS53-210ENST00000571456 PANK3Q9H999 370 aa28.27■■■□□ 2.12
VPS53-210ENST00000571456 CGNL1Q0VF96 1302 aa28.26■■■□□ 2.11
VPS53-210ENST00000571456 PTGER2P43116 358 aa28.26■■■□□ 2.11
VPS53-210ENST00000571456 NUTM2GQ5VZR2 741 aa28.26■■■□□ 2.11
VPS53-210ENST00000571456 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.26■■■□□ 2.11
VPS53-210ENST00000571456 KIF20BQ96Q89 1820 aa28.26■■■□□ 2.11
VPS53-210ENST00000571456 CEP350Q5VT06 3117 aa28.26■■■□□ 2.11
VPS53-210ENST00000571456 PEAK1Q9H792 1746 aa28.26■■■□□ 2.11
VPS53-210ENST00000571456 NSD3Q9BZ95 1437 aa28.26■■■□□ 2.11
VPS53-210ENST00000571456 OVOS2A0A0G2JMS6 1433 aa28.25■■■□□ 2.11
VPS53-210ENST00000571456 OVOS2A0A0J9YW53 1432 aa28.25■■■□□ 2.11
VPS53-210ENST00000571456 OVOS2Q6IE36 1432 aa28.25■■■□□ 2.11
VPS53-210ENST00000571456 SLIT3O75094 1523 aa28.24■■■□□ 2.11
VPS53-210ENST00000571456 LMO7Q8WWI1 1683 aa28.24■■■□□ 2.11
VPS53-210ENST00000571456 KCNH5Q8NCM2 988 aa28.24■■■□□ 2.11
VPS53-210ENST00000571456 SYT17Q9BSW7 474 aa28.23■■■□□ 2.11
VPS53-210ENST00000571456 CARD14Q9BXL6 1004 aa28.23■■■□□ 2.11
VPS53-210ENST00000571456 NSD2O96028 1365 aa28.23■■■□□ 2.11
VPS53-210ENST00000571456 BCL11BQ9C0K0 894 aaPredicted RBP28.22■■■□□ 2.11
VPS53-210ENST00000571456 ATF5Q9Y2D1 282 aaPredicted RBP28.22■■■□□ 2.11
VPS53-210ENST00000571456 FHDC1Q9C0D6 1143 aaPredicted RBP28.21■■■□□ 2.11
VPS53-210ENST00000571456 NME9Q86XW9 330 aa28.2■■■□□ 2.1
VPS53-210ENST00000571456 COG3Q96JB2 828 aa28.2■■■□□ 2.1
VPS53-210ENST00000571456 KNSTRNQ9Y448 316 aa28.2■■■□□ 2.1
VPS53-210ENST00000571456 CPDO75976 1380 aa28.2■■■□□ 2.1
VPS53-210ENST00000571456 FYB1O15117 783 aa28.18■■■□□ 2.1
VPS53-210ENST00000571456 GCP02774 474 aa28.18■■■□□ 2.1
VPS53-210ENST00000571456 ANKRD26Q9UPS8 1709 aa28.17■■■□□ 2.1
VPS53-210ENST00000571456 PROM2Q8N271 834 aa28.16■■■□□ 2.1
VPS53-210ENST00000571456 PTF1AQ7RTS3 328 aa28.14■■■□□ 2.1
VPS53-210ENST00000571456 COL5A2P05997 1499 aaPredicted RBP28.14■■■□□ 2.09
VPS53-210ENST00000571456 LRRC37A3O60309 1634 aa28.14■■■□□ 2.09
VPS53-210ENST00000571456 NPC1L1Q9UHC9 1359 aa28.13■■■□□ 2.09
VPS53-210ENST00000571456 ZNF316A6NFI3 1004 aaPredicted RBP28.13■■■□□ 2.09
VPS53-210ENST00000571456 CRB1P82279 1406 aa28.12■■■□□ 2.09
VPS53-210ENST00000571456 PER1O15534 1290 aaPredicted RBP28.12■■■□□ 2.09
VPS53-210ENST00000571456 STK32BQ9NY57 414 aa28.12■■■□□ 2.09
VPS53-210ENST00000571456 ABCC6O95255 1503 aa28.12■■■□□ 2.09
VPS53-210ENST00000571456 DDB1Q16531 1140 aa28.11■■■□□ 2.09
VPS53-210ENST00000571456 MTFR1LQ9H019 292 aa28.11■■■□□ 2.09
VPS53-210ENST00000571456 NFAT5O94916 1531 aa28.11■■■□□ 2.09
VPS53-210ENST00000571456 GGNBP2Q9H3C7 697 aa28.1■■■□□ 2.09
VPS53-210ENST00000571456 GIGYF1O75420 1035 aaPredicted RBP28.09■■■□□ 2.09
VPS53-210ENST00000571456 SGIP1Q9BQI5 828 aa28.09■■■□□ 2.09
VPS53-210ENST00000571456 SLC15A2Q16348 729 aa28.08■■■□□ 2.09
VPS53-210ENST00000571456 TXNRD1Q16881 649 aa28.06■■■□□ 2.08
VPS53-210ENST00000571456 AMER1Q5JTC6 1135 aaPredicted RBP28.06■■■□□ 2.08
VPS53-210ENST00000571456 AATKQ6ZMQ8 1374 aa28.06■■■□□ 2.08
VPS53-210ENST00000571456 ARHGEF25Q86VW2 580 aa28.05■■■□□ 2.08
VPS53-210ENST00000571456 GOLGB1Q14789 3259 aaKnown RBP28.05■■■□□ 2.08
VPS53-210ENST00000571456 LTN1O94822 1766 aa28.04■■■□□ 2.08
VPS53-210ENST00000571456 BCL9O00512 1426 aa28.04■■■□□ 2.08
VPS53-210ENST00000571456 KIF24Q5T7B8 1368 aa28.04■■■□□ 2.08
VPS53-210ENST00000571456 ARXQ96QS3 562 aa28.04■■■□□ 2.08
VPS53-210ENST00000571456 MAP3K5Q99683 1374 aa28.03■■■□□ 2.08
VPS53-210ENST00000571456 WNK3Q9BYP7 1800 aa28.03■■■□□ 2.08
VPS53-210ENST00000571456 MARCH10Q8NA82 808 aaPredicted RBP28.02■■■□□ 2.08
VPS53-210ENST00000571456 GPR162Q16538 588 aa28■■■□□ 2.07
VPS53-210ENST00000571456 RTL1A6NKG5 1358 aa27.99■■■□□ 2.07
VPS53-210ENST00000571456 COL18A1P39060 1754 aa27.99■■■□□ 2.07
VPS53-210ENST00000571456 MORC1Q86VD1 984 aa27.99■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms