RNA–Protein interactions for RNA: ENST00000565379.1

NME3-208, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 2

Gene NME3, Length 911 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-208ENST00000565379 SUGP2Q8IX01 1082 aaKnown RBP eCLIP35.75■■■■□ 3.31
NME3-208ENST00000565379 COL18A1P39060 1754 aa35.74■■■■□ 3.31
NME3-208ENST00000565379 BAG6P46379 1132 aa35.74■■■■□ 3.31
NME3-208ENST00000565379 TTC21AQ8NDW8 1320 aa35.74■■■■□ 3.31
NME3-208ENST00000565379 A0A1W2PP64 1363 aa35.73■■■■□ 3.31
NME3-208ENST00000565379 AATKQ6ZMQ8 1374 aa35.73■■■■□ 3.31
NME3-208ENST00000565379 MYOM1P52179 1685 aa35.72■■■■□ 3.31
NME3-208ENST00000565379 NME9Q86XW9 330 aa35.71■■■■□ 3.31
NME3-208ENST00000565379 AXIN2Q9Y2T1 843 aa35.71■■■■□ 3.31
NME3-208ENST00000565379 NFAT5O94916 1531 aa35.7■■■■□ 3.31
NME3-208ENST00000565379 ZNF316A6NFI3 1004 aaPredicted RBP35.69■■■■□ 3.3
NME3-208ENST00000565379 BARGINQ6ZT62 677 aa35.68■■■■□ 3.3
NME3-208ENST00000565379 ARHGEF25Q86VW2 580 aa35.68■■■■□ 3.3
NME3-208ENST00000565379 TCP11L2Q8N4U5 519 aa35.68■■■■□ 3.3
NME3-208ENST00000565379 EDC4Q6P2E9 1401 aaKnown RBP35.67■■■■□ 3.3
NME3-208ENST00000565379 PANK3Q9H999 370 aa35.64■■■■□ 3.3
NME3-208ENST00000565379 CRB1P82279 1406 aa35.64■■■■□ 3.3
NME3-208ENST00000565379 RGPD5Q99666 1765 aa35.64■■■■□ 3.3
NME3-208ENST00000565379 USP31Q70CQ4 1352 aa35.63■■■■□ 3.29
NME3-208ENST00000565379 KCNH5Q8NCM2 988 aa35.62■■■■□ 3.29
NME3-208ENST00000565379 USP54Q70EL1 1684 aa35.59■■■■□ 3.29
NME3-208ENST00000565379 EN1Q05925 392 aaPredicted RBP35.59■■■■□ 3.29
NME3-208ENST00000565379 TNS1Q9HBL0 1735 aaKnown RBP35.59■■■■□ 3.29
NME3-208ENST00000565379 RGPD1P0DJD0 1748 aa35.58■■■■□ 3.29
NME3-208ENST00000565379 FAM196AQ6ZSG2 479 aa35.57■■■■□ 3.28
NME3-208ENST00000565379 TOM1L2Q6ZVM7 507 aa35.57■■■■□ 3.28
NME3-208ENST00000565379 CARD14Q9BXL6 1004 aa35.57■■■■□ 3.28
NME3-208ENST00000565379 THRAP3Q9Y2W1 955 aaKnown RBP35.56■■■■□ 3.28
NME3-208ENST00000565379 NSD3Q9BZ95 1437 aa35.56■■■■□ 3.28
NME3-208ENST00000565379 WDR17Q8IZU2 1322 aa35.56■■■■□ 3.28
NME3-208ENST00000565379 PARP4Q9UKK3 1724 aaKnown RBP35.55■■■■□ 3.28
NME3-208ENST00000565379 TRIM37O94972 964 aa35.55■■■■□ 3.28
NME3-208ENST00000565379 PDE3BQ13370 1112 aa35.54■■■■□ 3.28
NME3-208ENST00000565379 PSDA5PKW4 1024 aaPredicted RBP35.53■■■■□ 3.28
NME3-208ENST00000565379 OVOS2A0A0J9YW53 1432 aa35.52■■■■□ 3.28
NME3-208ENST00000565379 OVOS2Q6IE36 1432 aa35.52■■■■□ 3.28
NME3-208ENST00000565379 KNSTRNQ9Y448 316 aa35.52■■■■□ 3.28
NME3-208ENST00000565379 CGNL1Q0VF96 1302 aa35.52■■■■□ 3.28
NME3-208ENST00000565379 DISP2A7MBM2 1401 aa35.51■■■■□ 3.28
NME3-208ENST00000565379 LRRC37A3O60309 1634 aa35.51■■■■□ 3.28
NME3-208ENST00000565379 WNK3Q9BYP7 1800 aa35.49■■■■□ 3.27
NME3-208ENST00000565379 CSB-PGBD3P0DP91 1061 aa35.49■■■■□ 3.27
NME3-208ENST00000565379 LTN1O94822 1766 aa35.48■■■■□ 3.27
NME3-208ENST00000565379 PER1O15534 1290 aaPredicted RBP35.45■■■■□ 3.27
NME3-208ENST00000565379 LRP5O75197 1615 aa35.45■■■■□ 3.27
NME3-208ENST00000565379 ABCC6O95255 1503 aa35.44■■■■□ 3.26
NME3-208ENST00000565379 NSD2O96028 1365 aa35.44■■■■□ 3.26
NME3-208ENST00000565379 FYB1O15117 783 aa35.44■■■■□ 3.26
NME3-208ENST00000565379 EZH2Q15910 746 aaKnown RBP35.44■■■■□ 3.26
NME3-208ENST00000565379 CAMKK2Q96RR4 588 aa35.44■■■■□ 3.26
NME3-208ENST00000565379 CARD10Q9BWT7 1032 aa35.43■■■■□ 3.26
NME3-208ENST00000565379 PEAK1Q9H792 1746 aa35.43■■■■□ 3.26
NME3-208ENST00000565379 FBLN1P23142 703 aa35.42■■■■□ 3.26
NME3-208ENST00000565379 DDX10Q13206 875 aaKnown RBP35.42■■■■□ 3.26
NME3-208ENST00000565379 APBA3O96018 575 aa35.41■■■■□ 3.26
NME3-208ENST00000565379 COG3Q96JB2 828 aa35.41■■■■□ 3.26
NME3-208ENST00000565379 R3HDM1Q15032 1099 aaKnown RBP35.4■■■■□ 3.26
NME3-208ENST00000565379 DDB1Q16531 1140 aa35.4■■■■□ 3.26
NME3-208ENST00000565379 NPC1L1Q9UHC9 1359 aa35.38■■■■□ 3.26
NME3-208ENST00000565379 ERBB3P21860 1342 aa35.38■■■■□ 3.25
NME3-208ENST00000565379 PARD3Q8TEW0 1356 aa35.37■■■■□ 3.25
NME3-208ENST00000565379 OVOS2A0A0G2JMS6 1433 aa35.36■■■■□ 3.25
NME3-208ENST00000565379 AMER1Q5JTC6 1135 aaPredicted RBP35.36■■■■□ 3.25
NME3-208ENST00000565379 PTF1AQ7RTS3 328 aa35.36■■■■□ 3.25
NME3-208ENST00000565379 MARCH10Q8NA82 808 aaPredicted RBP35.36■■■■□ 3.25
NME3-208ENST00000565379 GGNBP2Q9H3C7 697 aa35.36■■■■□ 3.25
NME3-208ENST00000565379 KIF20BQ96Q89 1820 aa35.35■■■■□ 3.25
NME3-208ENST00000565379 ANKRD24Q8TF21 1146 aa35.35■■■■□ 3.25
NME3-208ENST00000565379 NLRP2Q9NX02 1062 aa35.34■■■■□ 3.25
NME3-208ENST00000565379 MAP3K19Q56UN5 1328 aa35.31■■■■□ 3.24
NME3-208ENST00000565379 SBF2Q86WG5 1849 aa35.3■■■■□ 3.24
NME3-208ENST00000565379 LTV1Q96GA3 475 aaPredicted RBP35.29■■■■□ 3.24
NME3-208ENST00000565379 CDCA7Q9BWT1 371 aaPredicted RBP35.29■■■■□ 3.24
NME3-208ENST00000565379 IP6K1Q92551 441 aa35.28■■■■□ 3.24
NME3-208ENST00000565379 RREB1Q92766 1687 aa35.27■■■■□ 3.24
NME3-208ENST00000565379 TNS2Q63HR2 1409 aa35.25■■■■□ 3.23
NME3-208ENST00000565379 NUP188Q5SRE5 1749 aa35.24■■■■□ 3.23
NME3-208ENST00000565379 RRS1Q15050 365 aaKnown RBP35.24■■■■□ 3.23
NME3-208ENST00000565379 MORC1Q86VD1 984 aa35.24■■■■□ 3.23
NME3-208ENST00000565379 ANKRD26Q9UPS8 1709 aa35.23■■■■□ 3.23
NME3-208ENST00000565379 NBPF14Q5TI25 921 aa35.23■■■■□ 3.23
NME3-208ENST00000565379 EXOC5O00471 708 aa35.22■■■■□ 3.23
NME3-208ENST00000565379 HOXC9P31274 260 aa35.22■■■■□ 3.23
NME3-208ENST00000565379 CC2D1BQ5T0F9 858 aaKnown RBP35.21■■■■□ 3.23
NME3-208ENST00000565379 AMPHP49418 695 aa35.19■■■■□ 3.22
NME3-208ENST00000565379 IL2RBP14784 551 aa35.18■■■■□ 3.22
NME3-208ENST00000565379 BCL9O00512 1426 aa35.17■■■■□ 3.22
NME3-208ENST00000565379 RGPD2P0DJD1 1756 aa35.17■■■■□ 3.22
NME3-208ENST00000565379 BCL11BQ9C0K0 894 aaPredicted RBP35.16■■■■□ 3.22
NME3-208ENST00000565379 KCNQ2O43526 872 aa35.14■■■■□ 3.22
NME3-208ENST00000565379 FAM208AQ9UK61 1670 aaKnown RBP35.13■■■■□ 3.21
NME3-208ENST00000565379 KIF24Q5T7B8 1368 aa35.12■■■■□ 3.21
NME3-208ENST00000565379 PLSCR1O15162 318 aa35.11■■■■□ 3.21
NME3-208ENST00000565379 ACSBG1Q96GR2 724 aa35.11■■■■□ 3.21
NME3-208ENST00000565379 RTL1A6NKG5 1358 aa35.1■■■■□ 3.21
NME3-208ENST00000565379 RALBP1Q15311 655 aa35.09■■■■□ 3.21
NME3-208ENST00000565379 PROM2Q8N271 834 aa35.08■■■■□ 3.21
NME3-208ENST00000565379 RGPD3A6NKT7 1758 aaPredicted RBP35.08■■■■□ 3.21
NME3-208ENST00000565379 RGPD4Q7Z3J3 1758 aa35.08■■■■□ 3.21
NME3-208ENST00000565379 TNNT2P45379 298 aaPredicted RBP35.07■■■■□ 3.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms