RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 TMF1P82094 1093 aa23.62■■□□□ 1.37
CLK3-210ENST00000563112 TOM1L2Q6ZVM7 507 aa23.62■■□□□ 1.37
CLK3-210ENST00000563112 NME9Q86XW9 330 aa23.62■■□□□ 1.37
CLK3-210ENST00000563112 FAM196AQ6ZSG2 479 aa23.61■■□□□ 1.37
CLK3-210ENST00000563112 A0A1W2PP64 1363 aa23.61■■□□□ 1.37
CLK3-210ENST00000563112 AXIN2Q9Y2T1 843 aa23.6■■□□□ 1.37
CLK3-210ENST00000563112 COL18A1P39060 1754 aa23.59■■□□□ 1.37
CLK3-210ENST00000563112 WDR17Q8IZU2 1322 aa23.59■■□□□ 1.37
CLK3-210ENST00000563112 CSB-PGBD3P0DP91 1061 aa23.58■■□□□ 1.37
CLK3-210ENST00000563112 CDCA8Q53HL2 280 aa23.58■■□□□ 1.37
CLK3-210ENST00000563112 CCER1Q8TC90 406 aaPredicted RBP23.58■■□□□ 1.37
CLK3-210ENST00000563112 NFAT5O94916 1531 aa23.57■■□□□ 1.36
CLK3-210ENST00000563112 RGPD1P0DJD0 1748 aa23.56■■□□□ 1.36
CLK3-210ENST00000563112 USP54Q70EL1 1684 aa23.55■■□□□ 1.36
CLK3-210ENST00000563112 C11orf95C9JLR9 678 aaPredicted RBP23.53■■□□□ 1.36
CLK3-210ENST00000563112 CDCA7Q9BWT1 371 aaPredicted RBP23.53■■□□□ 1.36
CLK3-210ENST00000563112 ABCC6O95255 1503 aa23.53■■□□□ 1.36
CLK3-210ENST00000563112 RGPD5Q99666 1765 aa23.52■■□□□ 1.36
CLK3-210ENST00000563112 TRIM37O94972 964 aa23.52■■□□□ 1.36
CLK3-210ENST00000563112 CARD10Q9BWT7 1032 aa23.52■■□□□ 1.36
CLK3-210ENST00000563112 ANKRD36BQ8N2N9 1353 aa23.52■■□□□ 1.36
CLK3-210ENST00000563112 PARP4Q9UKK3 1724 aaKnown RBP23.51■■□□□ 1.35
CLK3-210ENST00000563112 EN1Q05925 392 aaPredicted RBP23.51■■□□□ 1.35
CLK3-210ENST00000563112 DDB1Q16531 1140 aa23.51■■□□□ 1.35
CLK3-210ENST00000563112 COG3Q96JB2 828 aa23.51■■□□□ 1.35
CLK3-210ENST00000563112 OVOS2A0A0J9YW53 1432 aa23.49■■□□□ 1.35
CLK3-210ENST00000563112 OVOS2Q6IE36 1432 aa23.49■■□□□ 1.35
CLK3-210ENST00000563112 CCDC7Q96M83 1385 aa23.48■■□□□ 1.35
CLK3-210ENST00000563112 APBA3O96018 575 aa23.47■■□□□ 1.35
CLK3-210ENST00000563112 DISP2A7MBM2 1401 aa23.47■■□□□ 1.35
CLK3-210ENST00000563112 LTN1O94822 1766 aa23.47■■□□□ 1.35
CLK3-210ENST00000563112 TNS1Q9HBL0 1735 aaKnown RBP23.46■■□□□ 1.35
CLK3-210ENST00000563112 NLRP2Q9NX02 1062 aa23.45■■□□□ 1.34
CLK3-210ENST00000563112 OVOS2A0A0G2JMS6 1433 aa23.44■■□□□ 1.34
CLK3-210ENST00000563112 ERBB3P21860 1342 aa23.44■■□□□ 1.34
CLK3-210ENST00000563112 EXOC5O00471 708 aa23.44■■□□□ 1.34
CLK3-210ENST00000563112 ANKRD24Q8TF21 1146 aa23.44■■□□□ 1.34
CLK3-210ENST00000563112 LRRC37A3O60309 1634 aa23.43■■□□□ 1.34
CLK3-210ENST00000563112 WNK3Q9BYP7 1800 aa23.43■■□□□ 1.34
CLK3-210ENST00000563112 EZH2Q15910 746 aaKnown RBP23.42■■□□□ 1.34
CLK3-210ENST00000563112 IP6K1Q92551 441 aa23.42■■□□□ 1.34
CLK3-210ENST00000563112 CAMKK2Q96RR4 588 aa23.41■■□□□ 1.34
CLK3-210ENST00000563112 PARD3Q8TEW0 1356 aa23.4■■□□□ 1.34
CLK3-210ENST00000563112 FYB1O15117 783 aa23.4■■□□□ 1.34
CLK3-210ENST00000563112 AMPHP49418 695 aa23.39■■□□□ 1.33
CLK3-210ENST00000563112 EIF4G2P78344 907 aaKnown RBP eCLIP23.39■■□□□ 1.33
CLK3-210ENST00000563112 GGNBP2Q9H3C7 697 aa23.39■■□□□ 1.33
CLK3-210ENST00000563112 MARCH10Q8NA82 808 aaPredicted RBP23.38■■□□□ 1.33
CLK3-210ENST00000563112 MAP3K19Q56UN5 1328 aa23.37■■□□□ 1.33
CLK3-210ENST00000563112 IL2RBP14784 551 aa23.37■■□□□ 1.33
CLK3-210ENST00000563112 LTV1Q96GA3 475 aaPredicted RBP23.37■■□□□ 1.33
CLK3-210ENST00000563112 PEAK1Q9H792 1746 aa23.36■■□□□ 1.33
CLK3-210ENST00000563112 PSDA5PKW4 1024 aaPredicted RBP23.36■■□□□ 1.33
CLK3-210ENST00000563112 POLR3GLQ9BT43 218 aa23.36■■□□□ 1.33
CLK3-210ENST00000563112 HOXC9P31274 260 aa23.35■■□□□ 1.33
CLK3-210ENST00000563112 FBLN1P23142 703 aa23.34■■□□□ 1.33
CLK3-210ENST00000563112 BCL11BQ9C0K0 894 aaPredicted RBP23.34■■□□□ 1.33
CLK3-210ENST00000563112 BCL9O00512 1426 aa23.33■■□□□ 1.33
CLK3-210ENST00000563112 HSPA5P11021 654 aaKnown RBP23.33■■□□□ 1.33
CLK3-210ENST00000563112 TNS2Q63HR2 1409 aa23.33■■□□□ 1.32
CLK3-210ENST00000563112 SBF2Q86WG5 1849 aa23.32■■□□□ 1.32
CLK3-210ENST00000563112 KIF20BQ96Q89 1820 aa23.32■■□□□ 1.32
CLK3-210ENST00000563112 R3HDM1Q15032 1099 aaKnown RBP23.32■■□□□ 1.32
CLK3-210ENST00000563112 NBPF14Q5TI25 921 aa23.32■■□□□ 1.32
CLK3-210ENST00000563112 CARD14Q9BXL6 1004 aa23.32■■□□□ 1.32
CLK3-210ENST00000563112 NSD3Q9BZ95 1437 aa23.32■■□□□ 1.32
CLK3-210ENST00000563112 MYOM1P52179 1685 aa23.32■■□□□ 1.32
CLK3-210ENST00000563112 RTL1A6NKG5 1358 aa23.31■■□□□ 1.32
CLK3-210ENST00000563112 RRS1Q15050 365 aaKnown RBP23.31■■□□□ 1.32
CLK3-210ENST00000563112 FAM208AQ9UK61 1670 aaKnown RBP23.31■■□□□ 1.32
CLK3-210ENST00000563112 SRCAPQ6ZRS2 3230 aa23.29■■□□□ 1.32
CLK3-210ENST00000563112 PLSCR1O15162 318 aa23.29■■□□□ 1.32
CLK3-210ENST00000563112 RREB1Q92766 1687 aa23.27■■□□□ 1.32
CLK3-210ENST00000563112 CGNL1Q0VF96 1302 aa23.27■■□□□ 1.32
CLK3-210ENST00000563112 SMG6Q86US8 1419 aaKnown RBP23.25■■□□□ 1.31
CLK3-210ENST00000563112 PTF1AQ7RTS3 328 aa23.25■■□□□ 1.31
CLK3-210ENST00000563112 KIF24Q5T7B8 1368 aa23.25■■□□□ 1.31
CLK3-210ENST00000563112 NUP188Q5SRE5 1749 aa23.23■■□□□ 1.31
CLK3-210ENST00000563112 RGPD3A6NKT7 1758 aaPredicted RBP23.23■■□□□ 1.31
CLK3-210ENST00000563112 RGPD4Q7Z3J3 1758 aa23.23■■□□□ 1.31
CLK3-210ENST00000563112 FLT4P35916 1363 aa23.23■■□□□ 1.31
CLK3-210ENST00000563112 DDX54Q8TDD1 881 aaKnown RBP23.22■■□□□ 1.31
CLK3-210ENST00000563112 ACSBG1Q96GR2 724 aa23.22■■□□□ 1.31
CLK3-210ENST00000563112 INSRP06213 1382 aa23.22■■□□□ 1.31
CLK3-210ENST00000563112 KAT6BQ8WYB5 2073 aa23.21■■□□□ 1.31
CLK3-210ENST00000563112 HSP90AB2PQ58FF8 381 aa23.21■■□□□ 1.31
CLK3-210ENST00000563112 NBPF6Q5VWK0 638 aa23.21■■□□□ 1.31
CLK3-210ENST00000563112 NBPF4Q96M43 638 aa23.21■■□□□ 1.31
CLK3-210ENST00000563112 LRP5O75197 1615 aa23.2■■□□□ 1.3
CLK3-210ENST00000563112 KCNQ2O43526 872 aa23.2■■□□□ 1.3
CLK3-210ENST00000563112 RGPD2P0DJD1 1756 aa23.19■■□□□ 1.3
CLK3-210ENST00000563112 ZCRB1Q8TBF4 217 aaKnown RBP23.19■■□□□ 1.3
CLK3-210ENST00000563112 PPM1GO15355 546 aaPredicted RBP23.18■■□□□ 1.3
CLK3-210ENST00000563112 RAPGEF4Q8WZA2 1011 aa23.18■■□□□ 1.3
CLK3-210ENST00000563112 PANK3Q9H999 370 aa23.18■■□□□ 1.3
CLK3-210ENST00000563112 EMILIN1Q9Y6C2 1016 aa23.18■■□□□ 1.3
CLK3-210ENST00000563112 NHSQ6T4R5 1651 aa23.17■■□□□ 1.3
CLK3-210ENST00000563112 USHBP1Q8N6Y0 703 aa23.17■■□□□ 1.3
CLK3-210ENST00000563112 TXNRD1Q16881 649 aa23.16■■□□□ 1.3
CLK3-210ENST00000563112 TATP17735 454 aaPredicted RBP23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms