RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 STRCQ7RTU9 1775 aa16.58■□□□□ 0.24
USP3-213ENST00000559711 SOX12O15370 315 aa16.57■□□□□ 0.24
USP3-213ENST00000559711 PHACTR3Q96KR7 559 aa16.57■□□□□ 0.24
USP3-213ENST00000559711 IL16Q14005 1332 aa16.57■□□□□ 0.24
USP3-213ENST00000559711 AMPHP49418 695 aa16.56■□□□□ 0.24
USP3-213ENST00000559711 NFE2L2Q16236 605 aa16.56■□□□□ 0.24
USP3-213ENST00000559711 PEAK1Q9H792 1746 aa16.56■□□□□ 0.24
USP3-213ENST00000559711 KRT28Q7Z3Y7 464 aa16.55■□□□□ 0.24
USP3-213ENST00000559711 MYH16Q9H6N6 1097 aa16.55■□□□□ 0.24
USP3-213ENST00000559711 MSH6P52701 1360 aa16.54■□□□□ 0.24
USP3-213ENST00000559711 KCNH5Q8NCM2 988 aa16.54■□□□□ 0.24
USP3-213ENST00000559711 MARF1Q9Y4F3 1742 aaKnown RBP16.54■□□□□ 0.24
USP3-213ENST00000559711 HOXC9P31274 260 aa16.53■□□□□ 0.24
USP3-213ENST00000559711 ARHGEF10O15013 1369 aa16.53■□□□□ 0.24
USP3-213ENST00000559711 SULT6B1Q6IMI4 303 aa16.53■□□□□ 0.24
USP3-213ENST00000559711 KIF1AQ12756 1690 aa16.53■□□□□ 0.24
USP3-213ENST00000559711 RTL1A6NKG5 1358 aa16.52■□□□□ 0.24
USP3-213ENST00000559711 AEBP1Q8IUX7 1158 aa16.52■□□□□ 0.23
USP3-213ENST00000559711 ZNF335Q9H4Z2 1342 aaPredicted RBP16.52■□□□□ 0.23
USP3-213ENST00000559711 XPCQ01831 940 aaPredicted RBP16.51■□□□□ 0.23
USP3-213ENST00000559711 IP6K1Q92551 441 aa16.5■□□□□ 0.23
USP3-213ENST00000559711 USP19O94966 1318 aa16.5■□□□□ 0.23
USP3-213ENST00000559711 IGSF1Q8N6C5 1336 aa16.5■□□□□ 0.23
USP3-213ENST00000559711 KDRP35968 1356 aa16.5■□□□□ 0.23
USP3-213ENST00000559711 NFAT5O94916 1531 aa16.5■□□□□ 0.23
USP3-213ENST00000559711 RGPD1P0DJD0 1748 aa16.5■□□□□ 0.23
USP3-213ENST00000559711 PLIN1O60240 522 aa16.5■□□□□ 0.23
USP3-213ENST00000559711 PELP1Q8IZL8 1130 aaKnown RBP16.5■□□□□ 0.23
USP3-213ENST00000559711 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.5■□□□□ 0.23
USP3-213ENST00000559711 EYA1Q99502 592 aa16.5■□□□□ 0.23
USP3-213ENST00000559711 GCP02774 474 aa16.49■□□□□ 0.23
USP3-213ENST00000559711 CT47B1P0C2W7 299 aaPredicted RBP16.49■□□□□ 0.23
USP3-213ENST00000559711 LMOD3Q0VAK6 560 aa16.49■□□□□ 0.23
USP3-213ENST00000559711 NPHP3Q7Z494 1330 aa16.48■□□□□ 0.23
USP3-213ENST00000559711 FANCIQ9NVI1 1328 aa16.48■□□□□ 0.23
USP3-213ENST00000559711 CALD1Q05682 793 aaKnown RBP16.48■□□□□ 0.23
USP3-213ENST00000559711 SLIT3O75094 1523 aa16.48■□□□□ 0.23
USP3-213ENST00000559711 TRPM3Q9HCF6 1732 aaPredicted RBP16.47■□□□□ 0.23
USP3-213ENST00000559711 BCAR3O75815 825 aa16.46■□□□□ 0.23
USP3-213ENST00000559711 RARSP54136 660 aaKnown RBP16.46■□□□□ 0.23
USP3-213ENST00000559711 ARHGEF25Q86VW2 580 aa16.46■□□□□ 0.23
USP3-213ENST00000559711 EXOC6Q8TAG9 804 aa16.46■□□□□ 0.23
USP3-213ENST00000559711 TSR2Q969E8 191 aaKnown RBP16.46■□□□□ 0.23
USP3-213ENST00000559711 ZNF853P0CG23 659 aa16.44■□□□□ 0.22
USP3-213ENST00000559711 B4GALNT3Q6L9W6 998 aa16.44■□□□□ 0.22
USP3-213ENST00000559711 LMOD2Q6P5Q4 547 aa16.44■□□□□ 0.22
USP3-213ENST00000559711 IFT57Q9NWB7 429 aa16.44■□□□□ 0.22
USP3-213ENST00000559711 XIRP1Q702N8 1843 aaKnown RBP16.44■□□□□ 0.22
USP3-213ENST00000559711 EXOSC9Q06265 439 aaKnown RBP16.43■□□□□ 0.22
USP3-213ENST00000559711 C20orf194Q5TEA3 1177 aa16.43■□□□□ 0.22
USP3-213ENST00000559711 BRINP3Q76B58 766 aa16.43■□□□□ 0.22
USP3-213ENST00000559711 DDX17Q92841 729 aaKnown RBP16.43■□□□□ 0.22
USP3-213ENST00000559711 SLAIN2Q9P270 581 aa16.43■□□□□ 0.22
USP3-213ENST00000559711 GNAI1P63096 354 aa16.43■□□□□ 0.22
USP3-213ENST00000559711 PHRF1Q9P1Y6 1649 aaKnown RBP16.42■□□□□ 0.22
USP3-213ENST00000559711 CRBNQ96SW2 442 aa16.42■□□□□ 0.22
USP3-213ENST00000559711 THUMPD2Q9BTF0 503 aaKnown RBP16.42■□□□□ 0.22
USP3-213ENST00000559711 PXDNQ92626 1479 aa16.42■□□□□ 0.22
USP3-213ENST00000559711 CCDC136Q96JN2 1154 aa16.41■□□□□ 0.22
USP3-213ENST00000559711 CFAP44Q96MT7 982 aa16.41■□□□□ 0.22
USP3-213ENST00000559711 ALS2Q96Q42 1657 aa16.41■□□□□ 0.22
USP3-213ENST00000559711 SPATA31A3Q5VYP0 1347 aa16.41■□□□□ 0.22
USP3-213ENST00000559711 PDE3AQ14432 1141 aa16.4■□□□□ 0.22
USP3-213ENST00000559711 MTHFSDQ2M296 383 aaKnown RBP16.4■□□□□ 0.22
USP3-213ENST00000559711 LTV1Q96GA3 475 aaPredicted RBP16.4■□□□□ 0.22
USP3-213ENST00000559711 TNS3Q68CZ2 1445 aa16.4■□□□□ 0.22
USP3-213ENST00000559711 FAM83GA6ND36 823 aa16.4■□□□□ 0.22
USP3-213ENST00000559711 GAS2L2Q8NHY3 880 aa16.4■□□□□ 0.22
USP3-213ENST00000559711 HTATSF1O43719 755 aaKnown RBP16.38■□□□□ 0.21
USP3-213ENST00000559711 NBPF6Q5VWK0 638 aa16.38■□□□□ 0.21
USP3-213ENST00000559711 ZNF428Q96B54 188 aa16.38■□□□□ 0.21
USP3-213ENST00000559711 NBPF4Q96M43 638 aa16.38■□□□□ 0.21
USP3-213ENST00000559711 MED1Q15648 1581 aaPredicted RBP16.38■□□□□ 0.21
USP3-213ENST00000559711 SOS2Q07890 1332 aaPredicted RBP16.38■□□□□ 0.21
USP3-213ENST00000559711 DCTN1Q14203 1278 aa16.37■□□□□ 0.21
USP3-213ENST00000559711 MBIPQ9NS73 344 aa16.37■□□□□ 0.21
USP3-213ENST00000559711 LAS1LQ9Y4W2 734 aaKnown RBP16.37■□□□□ 0.21
USP3-213ENST00000559711 LTN1O94822 1766 aa16.37■□□□□ 0.21
USP3-213ENST00000559711 ZBTB7CA1YPR0 619 aa16.36■□□□□ 0.21
USP3-213ENST00000559711 AXIN2Q9Y2T1 843 aa16.36■□□□□ 0.21
USP3-213ENST00000559711 NCAPD2Q15021 1401 aa16.35■□□□□ 0.21
USP3-213ENST00000559711 CHL1O00533 1208 aa16.35■□□□□ 0.21
USP3-213ENST00000559711 ALDH1L2Q3SY69 923 aa16.35■□□□□ 0.21
USP3-213ENST00000559711 MCM10Q7L590 875 aa16.35■□□□□ 0.21
USP3-213ENST00000559711 CRB1P82279 1406 aa16.35■□□□□ 0.21
USP3-213ENST00000559711 ZC3H6P61129 1189 aaKnown RBP16.34■□□□□ 0.21
USP3-213ENST00000559711 USHBP1Q8N6Y0 703 aa16.34■□□□□ 0.21
USP3-213ENST00000559711 ANKRD24Q8TF21 1146 aa16.34■□□□□ 0.21
USP3-213ENST00000559711 SSH1Q8WYL5 1049 aa16.34■□□□□ 0.21
USP3-213ENST00000559711 VAMP4O75379 141 aa16.34■□□□□ 0.21
USP3-213ENST00000559711 PLEKHG5O94827 1062 aa16.34■□□□□ 0.21
USP3-213ENST00000559711 CANXP27824 592 aaKnown RBP16.34■□□□□ 0.21
USP3-213ENST00000559711 BRPF1P55201 1214 aaPredicted RBP16.34■□□□□ 0.21
USP3-213ENST00000559711 RTF1Q92541 710 aaKnown RBP16.34■□□□□ 0.21
USP3-213ENST00000559711 FRAT1Q92837 279 aaPredicted RBP16.34■□□□□ 0.21
USP3-213ENST00000559711 BCL2L13Q9BXK5 485 aa16.34■□□□□ 0.21
USP3-213ENST00000559711 DLG5Q8TDM6 1919 aa16.33■□□□□ 0.2
USP3-213ENST00000559711 LRRC59Q96AG4 307 aaKnown RBP16.33■□□□□ 0.2
USP3-213ENST00000559711 SMC4Q9NTJ3 1288 aa16.33■□□□□ 0.2
USP3-213ENST00000559711 GNAT3A8MTJ3 354 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms