RNA–Protein interactions for RNA: ENST00000559061.5

SNX1-204, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 550 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-204ENST00000559061 THSD7AQ9UPZ6 1657 aa15.79■□□□□ 0.12
SNX1-204ENST00000559061 CGNL1Q0VF96 1302 aa15.79■□□□□ 0.12
SNX1-204ENST00000559061 MAP3K19Q56UN5 1328 aa15.79■□□□□ 0.12
SNX1-204ENST00000559061 COG3Q96JB2 828 aa15.79■□□□□ 0.12
SNX1-204ENST00000559061 QTRT2Q9H974 415 aaKnown RBP15.79■□□□□ 0.12
SNX1-204ENST00000559061 RGPD2P0DJD1 1756 aa15.79■□□□□ 0.12
SNX1-204ENST00000559061 BRWD3Q6RI45 1802 aa15.78■□□□□ 0.12
SNX1-204ENST00000559061 MSH5O43196 834 aa15.78■□□□□ 0.12
SNX1-204ENST00000559061 VPS72Q15906 364 aa15.78■□□□□ 0.12
SNX1-204ENST00000559061 CDK12Q9NYV4 1490 aaPredicted RBP15.78■□□□□ 0.12
SNX1-204ENST00000559061 TRPC5Q9UL62 973 aaPredicted RBP15.77■□□□□ 0.12
SNX1-204ENST00000559061 FAM208AQ9UK61 1670 aaKnown RBP15.76■□□□□ 0.11
SNX1-204ENST00000559061 NSD2O96028 1365 aa15.76■□□□□ 0.11
SNX1-204ENST00000559061 RRS1Q15050 365 aaKnown RBP15.76■□□□□ 0.11
SNX1-204ENST00000559061 LARP1Q6PKG0 1096 aaKnown RBP15.76■□□□□ 0.11
SNX1-204ENST00000559061 SMG6Q86US8 1419 aaKnown RBP15.76■□□□□ 0.11
SNX1-204ENST00000559061 SPATA31A5Q5VU36 1347 aa15.75■□□□□ 0.11
SNX1-204ENST00000559061 SPATA31A7Q8IWB4 1347 aa15.75■□□□□ 0.11
SNX1-204ENST00000559061 ZBTB7CA1YPR0 619 aa15.75■□□□□ 0.11
SNX1-204ENST00000559061 GJD4Q96KN9 370 aaPredicted RBP15.75■□□□□ 0.11
SNX1-204ENST00000559061 NPC1L1Q9UHC9 1359 aa15.75■□□□□ 0.11
SNX1-204ENST00000559061 SPATA31A1Q5TZJ5 1347 aa15.73■□□□□ 0.11
SNX1-204ENST00000559061 HOXC9P31274 260 aa15.73■□□□□ 0.11
SNX1-204ENST00000559061 RBM6P78332 1123 aaKnown RBP15.73■□□□□ 0.11
SNX1-204ENST00000559061 STRN4Q9NRL3 753 aa15.73■□□□□ 0.11
SNX1-204ENST00000559061 EMILIN1Q9Y6C2 1016 aa15.73■□□□□ 0.11
SNX1-204ENST00000559061 BLMP54132 1417 aaPredicted RBP15.73■□□□□ 0.11
SNX1-204ENST00000559061 RTL1A6NKG5 1358 aa15.73■□□□□ 0.11
SNX1-204ENST00000559061 ERBB3P21860 1342 aa15.72■□□□□ 0.11
SNX1-204ENST00000559061 CRB1P82279 1406 aa15.72■□□□□ 0.11
SNX1-204ENST00000559061 RXRBP28702 533 aa15.72■□□□□ 0.11
SNX1-204ENST00000559061 IP6K1Q92551 441 aa15.72■□□□□ 0.11
SNX1-204ENST00000559061 KNSTRNQ9Y448 316 aa15.72■□□□□ 0.11
SNX1-204ENST00000559061 LRRC37A3O60309 1634 aa15.72■□□□□ 0.11
SNX1-204ENST00000559061 PARP4Q9UKK3 1724 aaKnown RBP15.71■□□□□ 0.11
SNX1-204ENST00000559061 WDR17Q8IZU2 1322 aa15.71■□□□□ 0.11
SNX1-204ENST00000559061 POLKQ9UBT6 870 aa15.71■□□□□ 0.11
SNX1-204ENST00000559061 DISP2A7MBM2 1401 aa15.7■□□□□ 0.1
SNX1-204ENST00000559061 ONECUT3O60422 494 aaPredicted RBP15.7■□□□□ 0.1
SNX1-204ENST00000559061 TNNT2P45379 298 aaPredicted RBP15.69■□□□□ 0.1
SNX1-204ENST00000559061 CC2D1BQ5T0F9 858 aaKnown RBP15.69■□□□□ 0.1
SNX1-204ENST00000559061 FLT4P35916 1363 aa15.69■□□□□ 0.1
SNX1-204ENST00000559061 KIF24Q5T7B8 1368 aa15.69■□□□□ 0.1
SNX1-204ENST00000559061 RGPD1P0DJD0 1748 aa15.68■□□□□ 0.1
SNX1-204ENST00000559061 INSRP06213 1382 aa15.68■□□□□ 0.1
SNX1-204ENST00000559061 HSP90AB2PQ58FF8 381 aa15.68■□□□□ 0.1
SNX1-204ENST00000559061 ANKRD24Q8TF21 1146 aa15.68■□□□□ 0.1
SNX1-204ENST00000559061 SHANK3Q9BYB0 1731 aa15.68■□□□□ 0.1
SNX1-204ENST00000559061 NCAPD2Q15021 1401 aa15.68■□□□□ 0.1
SNX1-204ENST00000559061 COL3A1P02461 1466 aaPredicted RBP15.67■□□□□ 0.1
SNX1-204ENST00000559061 FAM98CQ17RN3 349 aaKnown RBP15.67■□□□□ 0.1
SNX1-204ENST00000559061 EP400Q96L91 3159 aa15.67■□□□□ 0.1
SNX1-204ENST00000559061 DDX10Q13206 875 aaKnown RBP15.66■□□□□ 0.1
SNX1-204ENST00000559061 MORC1Q86VD1 984 aa15.66■□□□□ 0.1
SNX1-204ENST00000559061 AMPHP49418 695 aa15.65■□□□□ 0.1
SNX1-204ENST00000559061 EVA1CP58658 441 aa15.65■□□□□ 0.1
SNX1-204ENST00000559061 BARGINQ6ZT62 677 aa15.65■□□□□ 0.1
SNX1-204ENST00000559061 USP35Q9P2H5 1018 aa15.65■□□□□ 0.1
SNX1-204ENST00000559061 CCDC9Q9Y3X0 531 aaKnown RBP15.65■□□□□ 0.1
SNX1-204ENST00000559061 SEPT12Q8IYM1 358 aa15.64■□□□□ 0.09
SNX1-204ENST00000559061 TCP11L2Q8N4U5 519 aa15.64■□□□□ 0.09
SNX1-204ENST00000559061 LTV1Q96GA3 475 aaPredicted RBP15.64■□□□□ 0.09
SNX1-204ENST00000559061 CARD10Q9BWT7 1032 aa15.64■□□□□ 0.09
SNX1-204ENST00000559061 MEGF6O75095 1541 aa15.63■□□□□ 0.09
SNX1-204ENST00000559061 PARD3Q8TEW0 1356 aa15.63■□□□□ 0.09
SNX1-204ENST00000559061 ZNF316A6NFI3 1004 aaPredicted RBP15.63■□□□□ 0.09
SNX1-204ENST00000559061 TOM1L2Q6ZVM7 507 aa15.63■□□□□ 0.09
SNX1-204ENST00000559061 CNGB1Q14028 1251 aaPredicted RBP15.62■□□□□ 0.09
SNX1-204ENST00000559061 NBPF6Q5VWK0 638 aa15.62■□□□□ 0.09
SNX1-204ENST00000559061 NBPF4Q96M43 638 aa15.62■□□□□ 0.09
SNX1-204ENST00000559061 THRAP3Q9Y2W1 955 aaKnown RBP15.61■□□□□ 0.09
SNX1-204ENST00000559061 PPM1GO15355 546 aaPredicted RBP15.6■□□□□ 0.09
SNX1-204ENST00000559061 CSB-PGBD3P0DP91 1061 aa15.6■□□□□ 0.09
SNX1-204ENST00000559061 EIF4A2Q14240 407 aaKnown RBP15.6■□□□□ 0.09
SNX1-204ENST00000559061 USHBP1Q8N6Y0 703 aa15.6■□□□□ 0.09
SNX1-204ENST00000559061 PKD1L3Q7Z443 1732 aa15.6■□□□□ 0.09
SNX1-204ENST00000559061 MTHFSP49914 203 aa15.59■□□□□ 0.09
SNX1-204ENST00000559061 NLRP2Q9NX02 1062 aa15.59■□□□□ 0.09
SNX1-204ENST00000559061 TNS2Q63HR2 1409 aa15.59■□□□□ 0.09
SNX1-204ENST00000559061 SBF2Q86WG5 1849 aa15.58■□□□□ 0.08
SNX1-204ENST00000559061 TNS1Q9HBL0 1735 aaKnown RBP15.57■□□□□ 0.08
SNX1-204ENST00000559061 PPP2R1AP30153 589 aa15.57■□□□□ 0.08
SNX1-204ENST00000559061 FAM182BQ5T319 152 aa15.57■□□□□ 0.08
SNX1-204ENST00000559061 EYA1Q99502 592 aa15.57■□□□□ 0.08
SNX1-204ENST00000559061 OVOS2A0A0G2JMS6 1433 aa15.57■□□□□ 0.08
SNX1-204ENST00000559061 IL13P35225 146 aa15.56■□□□□ 0.08
SNX1-204ENST00000559061 IGSF1Q8N6C5 1336 aa15.56■□□□□ 0.08
SNX1-204ENST00000559061 SOCS7O14512 581 aa15.54■□□□□ 0.08
SNX1-204ENST00000559061 KRT27Q7Z3Y8 459 aa15.54■□□□□ 0.08
SNX1-204ENST00000559061 IL2RBP14784 551 aa15.53■□□□□ 0.08
SNX1-204ENST00000559061 AEBP1Q8IUX7 1158 aa15.53■□□□□ 0.08
SNX1-204ENST00000559061 MARCH10Q8NA82 808 aaPredicted RBP15.53■□□□□ 0.08
SNX1-204ENST00000559061 TOGARAM1Q9Y4F4 1720 aa15.53■□□□□ 0.08
SNX1-204ENST00000559061 KDRP35968 1356 aa15.52■□□□□ 0.08
SNX1-204ENST00000559061 A0A0G2JS52 829 aa15.52■□□□□ 0.08
SNX1-204ENST00000559061 MYT1Q01538 1121 aa15.52■□□□□ 0.08
SNX1-204ENST00000559061 PIAS4Q8N2W9 510 aaPredicted RBP15.51■□□□□ 0.07
SNX1-204ENST00000559061 UPF1Q92900 1129 aaKnown RBP eCLIP15.51■□□□□ 0.07
SNX1-204ENST00000559061 CDCA7Q9BWT1 371 aaPredicted RBP15.51■□□□□ 0.07
SNX1-204ENST00000559061 BCL9O00512 1426 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms