RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 DUOX2Q9NRD8 1548 aa7.24□□□□□ -1.25
LDLR-209ENST00000558528 SLC34A2O95436 690 aa7.24□□□□□ -1.25
LDLR-209ENST00000558528 CLCN6P51797 869 aa7.24□□□□□ -1.25
LDLR-209ENST00000558528 SULF1Q8IWU6 871 aa7.24□□□□□ -1.25
LDLR-209ENST00000558528 PIP4P2Q8N4L2 257 aa7.24□□□□□ -1.25
LDLR-209ENST00000558528 RBM46Q8TBY0 533 aaKnown RBP7.24□□□□□ -1.25
LDLR-209ENST00000558528 KDM5CP41229 1560 aa7.24□□□□□ -1.25
LDLR-209ENST00000558528 MLH3Q9UHC1 1453 aa7.24□□□□□ -1.25
LDLR-209ENST00000558528 LRRC7Q96NW7 1537 aa7.23□□□□□ -1.25
LDLR-209ENST00000558528 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.23□□□□□ -1.25
LDLR-209ENST00000558528 IRX5P78411 483 aaPredicted RBP7.23□□□□□ -1.25
LDLR-209ENST00000558528 HDGFL1Q5TGJ6 251 aa7.23□□□□□ -1.25
LDLR-209ENST00000558528 RSBN1LQ6PCB5 846 aaPredicted RBP7.23□□□□□ -1.25
LDLR-209ENST00000558528 SPIRE2Q8WWL2 714 aa7.23□□□□□ -1.25
LDLR-209ENST00000558528 IVNS1ABPQ9Y6Y0 642 aa7.23□□□□□ -1.25
LDLR-209ENST00000558528 CDC42BPBQ9Y5S2 1711 aa7.23□□□□□ -1.25
LDLR-209ENST00000558528 POLR1AO95602 1720 aaPredicted RBP7.22□□□□□ -1.25
LDLR-209ENST00000558528 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.22□□□□□ -1.25
LDLR-209ENST00000558528 CFAP70Q5T0N1 1121 aa7.22□□□□□ -1.25
LDLR-209ENST00000558528 NUTM1Q86Y26 1132 aa7.22□□□□□ -1.25
LDLR-209ENST00000558528 ZNF710Q8N1W2 664 aa7.22□□□□□ -1.25
LDLR-209ENST00000558528 KIF3BO15066 747 aa7.21□□□□□ -1.26
LDLR-209ENST00000558528 AP1G2O75843 785 aa7.21□□□□□ -1.26
LDLR-209ENST00000558528 USP17L8P0C7I0 530 aa7.21□□□□□ -1.26
LDLR-209ENST00000558528 HSP90B1P14625 803 aaKnown RBP7.21□□□□□ -1.26
LDLR-209ENST00000558528 ERCC3P19447 782 aa7.21□□□□□ -1.26
LDLR-209ENST00000558528 SOX11P35716 441 aa7.21□□□□□ -1.26
LDLR-209ENST00000558528 SRPK2P78362 688 aaKnown RBP7.21□□□□□ -1.26
LDLR-209ENST00000558528 PRPF38BQ5VTL8 546 aaKnown RBP7.21□□□□□ -1.26
LDLR-209ENST00000558528 PADI6Q6TGC4 694 aa7.21□□□□□ -1.26
LDLR-209ENST00000558528 RBM33Q96EV2 1170 aaKnown RBP7.21□□□□□ -1.26
LDLR-209ENST00000558528 PPP1R12CQ9BZL4 782 aa7.21□□□□□ -1.26
LDLR-209ENST00000558528 ESF1Q9H501 851 aaKnown RBP7.21□□□□□ -1.26
LDLR-209ENST00000558528 VRTNQ9H8Y1 702 aa7.21□□□□□ -1.26
LDLR-209ENST00000558528 GNEQ9Y223 722 aaKnown RBP7.21□□□□□ -1.26
LDLR-209ENST00000558528 ZMYM3Q14202 1370 aa7.2□□□□□ -1.26
LDLR-209ENST00000558528 ABCA6Q8N139 1617 aa7.2□□□□□ -1.26
LDLR-209ENST00000558528 CDK12Q9NYV4 1490 aaPredicted RBP7.2□□□□□ -1.26
LDLR-209ENST00000558528 LILRB3O75022 631 aa7.2□□□□□ -1.26
LDLR-209ENST00000558528 ATG7O95352 703 aa7.2□□□□□ -1.26
LDLR-209ENST00000558528 PLCG2P16885 1265 aa7.2□□□□□ -1.26
LDLR-209ENST00000558528 NEUROD1Q13562 356 aa7.2□□□□□ -1.26
LDLR-209ENST00000558528 TSR1Q2NL82 804 aaKnown RBP7.2□□□□□ -1.26
LDLR-209ENST00000558528 TTC13Q8NBP0 860 aa7.2□□□□□ -1.26
LDLR-209ENST00000558528 STAC3Q96MF2 364 aa7.2□□□□□ -1.26
LDLR-209ENST00000558528 PCDHGA10Q9Y5H3 936 aa7.2□□□□□ -1.26
LDLR-209ENST00000558528 SYNMO15061 1565 aa7.2□□□□□ -1.26
LDLR-209ENST00000558528 PLXNC1O60486 1568 aa7.2□□□□□ -1.26
LDLR-209ENST00000558528 SETBP1Q9Y6X0 1596 aa7.2□□□□□ -1.26
LDLR-209ENST00000558528 TONSLQ96HA7 1378 aa7.2□□□□□ -1.26
LDLR-209ENST00000558528 FAM135BQ49AJ0 1406 aa7.19□□□□□ -1.26
LDLR-209ENST00000558528 A2MP01023 1474 aa7.19□□□□□ -1.26
LDLR-209ENST00000558528 STRCP1A6NGW2 1772 aa7.19□□□□□ -1.26
LDLR-209ENST00000558528 CD46P15529 392 aa7.19□□□□□ -1.26
LDLR-209ENST00000558528 RFX1P22670 979 aa7.19□□□□□ -1.26
LDLR-209ENST00000558528 CHRDL2Q6WN34 429 aa7.19□□□□□ -1.26
LDLR-209ENST00000558528 GCC2Q8IWJ2 1684 aa7.19□□□□□ -1.26
LDLR-209ENST00000558528 ADGBQ8N7X0 1667 aa7.19□□□□□ -1.26
LDLR-209ENST00000558528 A2ML1A8K2U0 1454 aa7.18□□□□□ -1.26
LDLR-209ENST00000558528 ATP7AQ04656 1500 aa7.18□□□□□ -1.26
LDLR-209ENST00000558528 FBXO31Q5XUX0 539 aaPredicted RBP7.18□□□□□ -1.26
LDLR-209ENST00000558528 MED14O60244 1454 aa7.17□□□□□ -1.26
LDLR-209ENST00000558528 CROCC2H7BZ55 1655 aa7.17□□□□□ -1.26
LDLR-209ENST00000558528 NUTM2BA6NNL0 878 aaPredicted RBP7.17□□□□□ -1.26
LDLR-209ENST00000558528 NUTM2EB1AL46 878 aaPredicted RBP7.17□□□□□ -1.26
LDLR-209ENST00000558528 NUTM2DQ5VT03 806 aaPredicted RBP7.17□□□□□ -1.26
LDLR-209ENST00000558528 TMEM92Q6UXU6 159 aa7.17□□□□□ -1.26
LDLR-209ENST00000558528 NUTM2AQ8IVF1 878 aaPredicted RBP7.17□□□□□ -1.26
LDLR-209ENST00000558528 NLRP7Q8WX94 980 aa7.17□□□□□ -1.26
LDLR-209ENST00000558528 SIN3AQ96ST3 1273 aa7.17□□□□□ -1.26
LDLR-209ENST00000558528 ANKRD30BQ9BXX2 1392 aa7.17□□□□□ -1.26
LDLR-209ENST00000558528 KDM5DQ9BY66 1539 aa7.17□□□□□ -1.26
LDLR-209ENST00000558528 RBM47A0AV96 593 aaKnown RBP7.16□□□□□ -1.26
LDLR-209ENST00000558528 PALM3A6NDB9 673 aaPredicted RBP7.16□□□□□ -1.26
LDLR-209ENST00000558528 FAM161AQ3B820 660 aa7.16□□□□□ -1.26
LDLR-209ENST00000558528 GGT6Q6P531 493 aa7.16□□□□□ -1.26
LDLR-209ENST00000558528 ADAMTS19Q8TE59 1207 aa7.16□□□□□ -1.26
LDLR-209ENST00000558528 GJD4Q96KN9 370 aaPredicted RBP7.16□□□□□ -1.26
LDLR-209ENST00000558528 ZBTB3Q9H5J0 574 aa7.16□□□□□ -1.26
LDLR-209ENST00000558528 WASHC2CQ9Y4E1 1318 aa7.16□□□□□ -1.26
LDLR-209ENST00000558528 C19orf67A6NJJ6 358 aa7.15□□□□□ -1.26
LDLR-209ENST00000558528 CSPP1Q1MSJ5 1256 aa7.15□□□□□ -1.26
LDLR-209ENST00000558528 ZNF772Q68DY9 489 aaPredicted RBP7.15□□□□□ -1.26
LDLR-209ENST00000558528 PUS7Q96PZ0 661 aaKnown RBP7.15□□□□□ -1.26
LDLR-209ENST00000558528 USP35Q9P2H5 1018 aa7.15□□□□□ -1.26
LDLR-209ENST00000558528 MOXD2PA6NHM9 499 aa7.14□□□□□ -1.27
LDLR-209ENST00000558528 TMEM88BA6NKF7 163 aa7.14□□□□□ -1.27
LDLR-209ENST00000558528 DEPDC5O75140 1603 aa7.14□□□□□ -1.27
LDLR-209ENST00000558528 NPHP4O75161 1426 aaPredicted RBP7.14□□□□□ -1.27
LDLR-209ENST00000558528 PZPP20742 1482 aa7.14□□□□□ -1.27
LDLR-209ENST00000558528 LMOD1P29536 600 aaPredicted RBP7.14□□□□□ -1.27
LDLR-209ENST00000558528 PRSS12P56730 875 aa7.14□□□□□ -1.27
LDLR-209ENST00000558528 USP46P62068 366 aa7.14□□□□□ -1.27
LDLR-209ENST00000558528 QPCTQ16769 361 aa7.14□□□□□ -1.27
LDLR-209ENST00000558528 C6orf132Q5T0Z8 1188 aa7.14□□□□□ -1.27
LDLR-209ENST00000558528 EP400Q96L91 3159 aa7.14□□□□□ -1.27
LDLR-209ENST00000558528 ALG2Q9H553 416 aa7.14□□□□□ -1.27
LDLR-209ENST00000558528 INO80Q9ULG1 1556 aaPredicted RBP7.13□□□□□ -1.27
LDLR-209ENST00000558528 FAM135AQ9P2D6 1515 aa7.13□□□□□ -1.27
LDLR-209ENST00000558528 CCDC144AA2RUR9 1427 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 1115.2 ms