RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 MARF1Q9Y4F3 1742 aaKnown RBP16.33■□□□□ 0.21
SHMT2-233ENST00000557529 RTL1A6NKG5 1358 aa16.33■□□□□ 0.2
SHMT2-233ENST00000557529 HSP90AB2PQ58FF8 381 aa16.32■□□□□ 0.2
SHMT2-233ENST00000557529 NPHP3Q7Z494 1330 aa16.31■□□□□ 0.2
SHMT2-233ENST00000557529 HMOX1P09601 288 aa16.31■□□□□ 0.2
SHMT2-233ENST00000557529 XIRP1Q702N8 1843 aaKnown RBP16.31■□□□□ 0.2
SHMT2-233ENST00000557529 TRPM3Q9HCF6 1732 aaPredicted RBP16.31■□□□□ 0.2
SHMT2-233ENST00000557529 ARHGEF10O15013 1369 aa16.3■□□□□ 0.2
SHMT2-233ENST00000557529 MYH16Q9H6N6 1097 aa16.3■□□□□ 0.2
SHMT2-233ENST00000557529 HOXC9P31274 260 aa16.29■□□□□ 0.2
SHMT2-233ENST00000557529 RRP1P56182 461 aaKnown RBP16.29■□□□□ 0.2
SHMT2-233ENST00000557529 RIPK4P57078 832 aa16.29■□□□□ 0.2
SHMT2-233ENST00000557529 XPCQ01831 940 aaPredicted RBP16.29■□□□□ 0.2
SHMT2-233ENST00000557529 NFE2L2Q16236 605 aa16.29■□□□□ 0.2
SHMT2-233ENST00000557529 SPINK5Q9NQ38 1064 aaPredicted RBP16.29■□□□□ 0.2
SHMT2-233ENST00000557529 NFAT5O94916 1531 aa16.29■□□□□ 0.2
SHMT2-233ENST00000557529 USP19O94966 1318 aa16.28■□□□□ 0.2
SHMT2-233ENST00000557529 IL16Q14005 1332 aa16.28■□□□□ 0.2
SHMT2-233ENST00000557529 SLIT3O75094 1523 aa16.28■□□□□ 0.2
SHMT2-233ENST00000557529 RGPD1P0DJD0 1748 aa16.28■□□□□ 0.2
SHMT2-233ENST00000557529 IRX6P78412 446 aaPredicted RBP16.27■□□□□ 0.2
SHMT2-233ENST00000557529 SULT6B1Q6IMI4 303 aa16.27■□□□□ 0.2
SHMT2-233ENST00000557529 TRIM35Q9UPQ4 493 aa16.27■□□□□ 0.2
SHMT2-233ENST00000557529 LMOD3Q0VAK6 560 aa16.26■□□□□ 0.19
SHMT2-233ENST00000557529 IP6K1Q92551 441 aa16.26■□□□□ 0.19
SHMT2-233ENST00000557529 PHACTR3Q96KR7 559 aa16.26■□□□□ 0.19
SHMT2-233ENST00000557529 CALD1Q05682 793 aaKnown RBP16.26■□□□□ 0.19
SHMT2-233ENST00000557529 LMOD2Q6P5Q4 547 aa16.26■□□□□ 0.19
SHMT2-233ENST00000557529 IGSF1Q8N6C5 1336 aa16.25■□□□□ 0.19
SHMT2-233ENST00000557529 GCP02774 474 aa16.25■□□□□ 0.19
SHMT2-233ENST00000557529 SLAIN2Q9P270 581 aa16.25■□□□□ 0.19
SHMT2-233ENST00000557529 KDRP35968 1356 aa16.24■□□□□ 0.19
SHMT2-233ENST00000557529 ALS2Q96Q42 1657 aa16.24■□□□□ 0.19
SHMT2-233ENST00000557529 PHRF1Q9P1Y6 1649 aaKnown RBP16.24■□□□□ 0.19
SHMT2-233ENST00000557529 TNS3Q68CZ2 1445 aa16.24■□□□□ 0.19
SHMT2-233ENST00000557529 BRINP3Q76B58 766 aa16.24■□□□□ 0.19
SHMT2-233ENST00000557529 AEBP1Q8IUX7 1158 aa16.24■□□□□ 0.19
SHMT2-233ENST00000557529 PPP4R2Q9NY27 417 aa16.24■□□□□ 0.19
SHMT2-233ENST00000557529 PXDNQ92626 1479 aa16.23■□□□□ 0.19
SHMT2-233ENST00000557529 ARHGEF25Q86VW2 580 aa16.23■□□□□ 0.19
SHMT2-233ENST00000557529 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.23■□□□□ 0.19
SHMT2-233ENST00000557529 EYA1Q99502 592 aa16.23■□□□□ 0.19
SHMT2-233ENST00000557529 LTN1O94822 1766 aa16.23■□□□□ 0.19
SHMT2-233ENST00000557529 CT47B1P0C2W7 299 aaPredicted RBP16.22■□□□□ 0.19
SHMT2-233ENST00000557529 SPATA31A3Q5VYP0 1347 aa16.2■□□□□ 0.18
SHMT2-233ENST00000557529 PELP1Q8IZL8 1130 aaKnown RBP16.2■□□□□ 0.18
SHMT2-233ENST00000557529 DDX17Q92841 729 aaKnown RBP16.19■□□□□ 0.18
SHMT2-233ENST00000557529 FANCIQ9NVI1 1328 aa16.19■□□□□ 0.18
SHMT2-233ENST00000557529 LTV1Q96GA3 475 aaPredicted RBP16.18■□□□□ 0.18
SHMT2-233ENST00000557529 SOS2Q07890 1332 aaPredicted RBP16.18■□□□□ 0.18
SHMT2-233ENST00000557529 MED1Q15648 1581 aaPredicted RBP16.18■□□□□ 0.18
SHMT2-233ENST00000557529 ZBTB7CA1YPR0 619 aa16.17■□□□□ 0.18
SHMT2-233ENST00000557529 GNAI1P63096 354 aa16.17■□□□□ 0.18
SHMT2-233ENST00000557529 GAS2L2Q8NHY3 880 aa16.17■□□□□ 0.18
SHMT2-233ENST00000557529 IFT57Q9NWB7 429 aa16.17■□□□□ 0.18
SHMT2-233ENST00000557529 TSR2Q969E8 191 aaKnown RBP16.15■□□□□ 0.18
SHMT2-233ENST00000557529 ABCC6O95255 1503 aa16.15■□□□□ 0.18
SHMT2-233ENST00000557529 HTATSF1O43719 755 aaKnown RBP16.13■□□□□ 0.17
SHMT2-233ENST00000557529 PLIN1O60240 522 aa16.13■□□□□ 0.17
SHMT2-233ENST00000557529 PLEKHG5O94827 1062 aa16.13■□□□□ 0.17
SHMT2-233ENST00000557529 ZNF853P0CG23 659 aa16.13■□□□□ 0.17
SHMT2-233ENST00000557529 RARSP54136 660 aaKnown RBP16.13■□□□□ 0.17
SHMT2-233ENST00000557529 CFAP44Q96MT7 982 aa16.13■□□□□ 0.17
SHMT2-233ENST00000557529 DLG5Q8TDM6 1919 aa16.13■□□□□ 0.17
SHMT2-233ENST00000557529 EXOSC9Q06265 439 aaKnown RBP16.13■□□□□ 0.17
SHMT2-233ENST00000557529 MTHFSDQ2M296 383 aaKnown RBP16.13■□□□□ 0.17
SHMT2-233ENST00000557529 NBPF6Q5VWK0 638 aa16.13■□□□□ 0.17
SHMT2-233ENST00000557529 ANKRD24Q8TF21 1146 aa16.13■□□□□ 0.17
SHMT2-233ENST00000557529 NBPF4Q96M43 638 aa16.13■□□□□ 0.17
SHMT2-233ENST00000557529 CPDO75976 1380 aa16.12■□□□□ 0.17
SHMT2-233ENST00000557529 BCAR3O75815 825 aa16.12■□□□□ 0.17
SHMT2-233ENST00000557529 ZC3H6P61129 1189 aaKnown RBP16.12■□□□□ 0.17
SHMT2-233ENST00000557529 RTF1Q92541 710 aaKnown RBP16.12■□□□□ 0.17
SHMT2-233ENST00000557529 ZNF428Q96B54 188 aa16.12■□□□□ 0.17
SHMT2-233ENST00000557529 THUMPD2Q9BTF0 503 aaKnown RBP16.12■□□□□ 0.17
SHMT2-233ENST00000557529 LTBP4Q8N2S1 1624 aa16.12■□□□□ 0.17
SHMT2-233ENST00000557529 NCAPD2Q15021 1401 aa16.11■□□□□ 0.17
SHMT2-233ENST00000557529 NHSL1Q5SYE7 1610 aa16.11■□□□□ 0.17
SHMT2-233ENST00000557529 FAM83GA6ND36 823 aa16.11■□□□□ 0.17
SHMT2-233ENST00000557529 LAS1LQ9Y4W2 734 aaKnown RBP16.11■□□□□ 0.17
SHMT2-233ENST00000557529 CRYBG1Q9Y4K1 1723 aa16.1■□□□□ 0.17
SHMT2-233ENST00000557529 PDE3AQ14432 1141 aa16.1■□□□□ 0.17
SHMT2-233ENST00000557529 EXOC6Q8TAG9 804 aa16.1■□□□□ 0.17
SHMT2-233ENST00000557529 GNAT3A8MTJ3 354 aa16.09■□□□□ 0.17
SHMT2-233ENST00000557529 CANXP27824 592 aaKnown RBP16.09■□□□□ 0.17
SHMT2-233ENST00000557529 DCTN1Q14203 1278 aa16.09■□□□□ 0.17
SHMT2-233ENST00000557529 USHBP1Q8N6Y0 703 aa16.09■□□□□ 0.17
SHMT2-233ENST00000557529 CABLES1Q8TDN4 633 aa16.09■□□□□ 0.17
SHMT2-233ENST00000557529 MBIPQ9NS73 344 aa16.09■□□□□ 0.17
SHMT2-233ENST00000557529 AXIN2Q9Y2T1 843 aa16.09■□□□□ 0.17
SHMT2-233ENST00000557529 ERBB3P21860 1342 aa16.09■□□□□ 0.17
SHMT2-233ENST00000557529 CAMTA1Q9Y6Y1 1673 aa16.09■□□□□ 0.17
SHMT2-233ENST00000557529 LRRC59Q96AG4 307 aaKnown RBP16.08■□□□□ 0.16
SHMT2-233ENST00000557529 CCDC136Q96JN2 1154 aa16.08■□□□□ 0.16
SHMT2-233ENST00000557529 CRBNQ96SW2 442 aa16.08■□□□□ 0.16
SHMT2-233ENST00000557529 MAP3K5Q99683 1374 aa16.07■□□□□ 0.16
SHMT2-233ENST00000557529 ALDH1L2Q3SY69 923 aa16.07■□□□□ 0.16
SHMT2-233ENST00000557529 AMOTQ4VCS5 1084 aa16.07■□□□□ 0.16
SHMT2-233ENST00000557529 PLEKHO1Q53GL0 409 aaPredicted RBP16.07■□□□□ 0.16
SHMT2-233ENST00000557529 B4GALNT3Q6L9W6 998 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms