RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 PRDM15P57071 1507 aaPredicted RBP18.24■□□□□ 0.51
CUX1-215ENST00000556210 CCDC27Q2M243 656 aa18.24■□□□□ 0.51
CUX1-215ENST00000556210 ABCC1P33527 1531 aa18.23■□□□□ 0.51
CUX1-215ENST00000556210 HDGFL1Q5TGJ6 251 aa18.23■□□□□ 0.51
CUX1-215ENST00000556210 CFAP44Q96MT7 982 aa18.23■□□□□ 0.51
CUX1-215ENST00000556210 ZBTB40Q9NUA8 1239 aa18.23■□□□□ 0.51
CUX1-215ENST00000556210 INTS3Q68E01 1043 aaKnown RBP18.23■□□□□ 0.51
CUX1-215ENST00000556210 TBC1D9Q6ZT07 1266 aa18.23■□□□□ 0.51
CUX1-215ENST00000556210 IFT57Q9NWB7 429 aa18.23■□□□□ 0.51
CUX1-215ENST00000556210 NPC1L1Q9UHC9 1359 aa18.22■□□□□ 0.51
CUX1-215ENST00000556210 EIF4A2Q14240 407 aaKnown RBP18.22■□□□□ 0.51
CUX1-215ENST00000556210 DNTTIP2Q5QJE6 756 aaKnown RBP18.22■□□□□ 0.51
CUX1-215ENST00000556210 OTUD7AQ8TE49 926 aaPredicted RBP18.22■□□□□ 0.51
CUX1-215ENST00000556210 LARP6Q9BRS8 491 aaKnown RBP18.22■□□□□ 0.51
CUX1-215ENST00000556210 UBTFL1P0CB47 393 aaPredicted RBP18.21■□□□□ 0.51
CUX1-215ENST00000556210 MSNP26038 577 aaKnown RBP18.21■□□□□ 0.51
CUX1-215ENST00000556210 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.21■□□□□ 0.51
CUX1-215ENST00000556210 MPNDQ8N594 471 aa18.21■□□□□ 0.51
CUX1-215ENST00000556210 DDX54Q8TDD1 881 aaKnown RBP18.21■□□□□ 0.51
CUX1-215ENST00000556210 TRPM1Q7Z4N2 1603 aa18.21■□□□□ 0.51
CUX1-215ENST00000556210 ADCY10Q96PN6 1610 aa18.21■□□□□ 0.51
CUX1-215ENST00000556210 ALDH1L2Q3SY69 923 aa18.2■□□□□ 0.5
CUX1-215ENST00000556210 C1orf141Q5JVX7 400 aa18.2■□□□□ 0.5
CUX1-215ENST00000556210 YTHDC2Q9H6S0 1430 aaKnown RBP18.2■□□□□ 0.5
CUX1-215ENST00000556210 ZCCHC11Q5TAX3 1644 aaKnown RBP18.2■□□□□ 0.5
CUX1-215ENST00000556210 REC8O95072 547 aa18.2■□□□□ 0.5
CUX1-215ENST00000556210 MRPL50Q8N5N7 158 aaKnown RBP18.2■□□□□ 0.5
CUX1-215ENST00000556210 NUTM1Q86Y26 1132 aa18.19■□□□□ 0.5
CUX1-215ENST00000556210 UPF3BQ9BZI7 483 aaKnown RBP18.19■□□□□ 0.5
CUX1-215ENST00000556210 MRE11P49959 708 aa18.19■□□□□ 0.5
CUX1-215ENST00000556210 RNF214Q8ND24 703 aa18.19■□□□□ 0.5
CUX1-215ENST00000556210 PPIP5K1Q6PFW1 1433 aa18.19■□□□□ 0.5
CUX1-215ENST00000556210 DTNBO60941 627 aa18.19■□□□□ 0.5
CUX1-215ENST00000556210 NLRP2Q9NX02 1062 aa18.18■□□□□ 0.5
CUX1-215ENST00000556210 ZC3H6P61129 1189 aaKnown RBP18.18■□□□□ 0.5
CUX1-215ENST00000556210 NUCB1Q02818 461 aa18.18■□□□□ 0.5
CUX1-215ENST00000556210 CAVIN1Q6NZI2 390 aaKnown RBP18.18■□□□□ 0.5
CUX1-215ENST00000556210 CROCC2H7BZ55 1655 aa18.17■□□□□ 0.5
CUX1-215ENST00000556210 GNAI2P04899 355 aa18.17■□□□□ 0.5
CUX1-215ENST00000556210 HDAC1Q13547 482 aaPredicted RBP18.17■□□□□ 0.5
CUX1-215ENST00000556210 NSD2O96028 1365 aa18.17■□□□□ 0.5
CUX1-215ENST00000556210 PRPF40AO75400 957 aaKnown RBP18.16■□□□□ 0.5
CUX1-215ENST00000556210 SSFA2P28290 1259 aa18.16■□□□□ 0.5
CUX1-215ENST00000556210 CCDC30Q5VVM6 783 aa18.16■□□□□ 0.5
CUX1-215ENST00000556210 G2E3Q7L622 706 aa18.16■□□□□ 0.5
CUX1-215ENST00000556210 GAS2L2Q8NHY3 880 aa18.16■□□□□ 0.5
CUX1-215ENST00000556210 SIL1Q9H173 461 aa18.16■□□□□ 0.5
CUX1-215ENST00000556210 INSRP06213 1382 aa18.16■□□□□ 0.5
CUX1-215ENST00000556210 ABCC11Q96J66 1382 aa18.16■□□□□ 0.5
CUX1-215ENST00000556210 TTC21BQ7Z4L5 1316 aa18.16■□□□□ 0.5
CUX1-215ENST00000556210 K7ELQ4 463 aaPredicted RBP18.16■□□□□ 0.5
CUX1-215ENST00000556210 PLEKHF1Q96S99 279 aa18.15■□□□□ 0.5
CUX1-215ENST00000556210 PANK2Q9BZ23 570 aa18.15■□□□□ 0.5
CUX1-215ENST00000556210 CLTCL1P53675 1640 aa18.15■□□□□ 0.5
CUX1-215ENST00000556210 MPRIPQ6WCQ1 1025 aa18.15■□□□□ 0.5
CUX1-215ENST00000556210 TRPM2O94759 1503 aa18.15■□□□□ 0.5
CUX1-215ENST00000556210 ZBTB7BO15156 539 aaPredicted RBP18.15■□□□□ 0.5
CUX1-215ENST00000556210 RIMS2Q9UQ26 1411 aa18.14■□□□□ 0.49
CUX1-215ENST00000556210 SMC5Q8IY18 1101 aa18.14■□□□□ 0.49
CUX1-215ENST00000556210 ZFYVE16Q7Z3T8 1539 aa18.14■□□□□ 0.49
CUX1-215ENST00000556210 IL13P35225 146 aa18.14■□□□□ 0.49
CUX1-215ENST00000556210 MTHFSDQ2M296 383 aaKnown RBP18.14■□□□□ 0.49
CUX1-215ENST00000556210 ZNF530Q6P9A1 599 aaPredicted RBP18.14■□□□□ 0.49
CUX1-215ENST00000556210 POGZQ7Z3K3 1410 aa18.14■□□□□ 0.49
CUX1-215ENST00000556210 UBE2Q2Q8WVN8 375 aa18.14■□□□□ 0.49
CUX1-215ENST00000556210 TNPO1Q92973 898 aaKnown RBP18.14■□□□□ 0.49
CUX1-215ENST00000556210 SRGAP3O43295 1099 aa18.13■□□□□ 0.49
CUX1-215ENST00000556210 LRRFIP2Q9Y608 721 aaKnown RBP18.13■□□□□ 0.49
CUX1-215ENST00000556210 XRCC6P12956 609 aaKnown RBP eCLIP18.13■□□□□ 0.49
CUX1-215ENST00000556210 MYL6BP14649 208 aa18.13■□□□□ 0.49
CUX1-215ENST00000556210 DIAPH3Q9NSV4 1193 aa18.13■□□□□ 0.49
CUX1-215ENST00000556210 THEMISQ8N1K5 641 aaPredicted RBP18.12■□□□□ 0.49
CUX1-215ENST00000556210 GRPEL1Q9HAV7 217 aa18.12■□□□□ 0.49
CUX1-215ENST00000556210 LRRCC1Q9C099 1032 aa18.11■□□□□ 0.49
CUX1-215ENST00000556210 RRAGDQ9NQL2 400 aaPredicted RBP18.11■□□□□ 0.49
CUX1-215ENST00000556210 GOLGA6L4A6NEF3 574 aa18.11■□□□□ 0.49
CUX1-215ENST00000556210 JARID2Q92833 1246 aaPredicted RBP18.11■□□□□ 0.49
CUX1-215ENST00000556210 FOSBP53539 338 aa18.11■□□□□ 0.49
CUX1-215ENST00000556210 IL16Q14005 1332 aa18.11■□□□□ 0.49
CUX1-215ENST00000556210 IQGAP3Q86VI3 1631 aa18.1■□□□□ 0.49
CUX1-215ENST00000556210 GNAT3A8MTJ3 354 aa18.1■□□□□ 0.49
CUX1-215ENST00000556210 GNAI3P08754 354 aa18.1■□□□□ 0.49
CUX1-215ENST00000556210 IFIT2P09913 472 aaKnown RBP18.1■□□□□ 0.49
CUX1-215ENST00000556210 BMP2KLQ5H9B9 411 aa18.1■□□□□ 0.49
CUX1-215ENST00000556210 FLIIQ13045 1269 aa18.1■□□□□ 0.49
CUX1-215ENST00000556210 RPAP2Q8IXW5 612 aaPredicted RBP18.09■□□□□ 0.49
CUX1-215ENST00000556210 SDSP20132 328 aa18.09■□□□□ 0.49
CUX1-215ENST00000556210 MAP3K19Q56UN5 1328 aa18.09■□□□□ 0.49
CUX1-215ENST00000556210 TAF7Q15545 349 aaPredicted RBP18.09■□□□□ 0.49
CUX1-215ENST00000556210 PTMSP20962 102 aa18.08■□□□□ 0.49
CUX1-215ENST00000556210 SKOR2Q2VWA4 1001 aaPredicted RBP18.08■□□□□ 0.49
CUX1-215ENST00000556210 ESPNB1AK53 854 aa18.08■□□□□ 0.49
CUX1-215ENST00000556210 LTKP29376 864 aa18.08■□□□□ 0.49
CUX1-215ENST00000556210 RIC3Q7Z5B4 369 aa18.08■□□□□ 0.49
CUX1-215ENST00000556210 EYA1Q99502 592 aa18.08■□□□□ 0.49
CUX1-215ENST00000556210 ERC2O15083 957 aa18.08■□□□□ 0.48
CUX1-215ENST00000556210 CWC27Q6UX04 472 aaKnown RBP18.08■□□□□ 0.48
CUX1-215ENST00000556210 LRRC59Q96AG4 307 aaKnown RBP18.07■□□□□ 0.48
CUX1-215ENST00000556210 PIP4K2AP48426 406 aaPredicted RBP18.07■□□□□ 0.48
CUX1-215ENST00000556210 CCT4P50991 539 aaKnown RBP18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms