RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 CCDC61Q9Y6R9 512 aa17.01■□□□□ 0.31
SHMT2-222ENST00000555774 C3P01024 1663 aa17.01■□□□□ 0.31
SHMT2-222ENST00000555774 NUDT16Q96DE0 195 aaKnown RBP17.01■□□□□ 0.31
SHMT2-222ENST00000555774 PHACTR3Q96KR7 559 aa17.01■□□□□ 0.31
SHMT2-222ENST00000555774 C22orf23Q9BZE7 217 aa17.01■□□□□ 0.31
SHMT2-222ENST00000555774 EMILIN1Q9Y6C2 1016 aa17.01■□□□□ 0.31
SHMT2-222ENST00000555774 AKAP12Q02952 1782 aa17.01■□□□□ 0.31
SHMT2-222ENST00000555774 TSPOAP1O95153 1857 aa17■□□□□ 0.31
SHMT2-222ENST00000555774 NME9Q86XW9 330 aa17■□□□□ 0.31
SHMT2-222ENST00000555774 ZNF692Q9BU19 519 aaPredicted RBP17■□□□□ 0.31
SHMT2-222ENST00000555774 GCC1Q96CN9 775 aa16.99■□□□□ 0.31
SHMT2-222ENST00000555774 NRKQ7Z2Y5 1582 aa16.99■□□□□ 0.31
SHMT2-222ENST00000555774 HMOX1P09601 288 aa16.99■□□□□ 0.31
SHMT2-222ENST00000555774 ITSN1Q15811 1721 aa16.99■□□□□ 0.31
SHMT2-222ENST00000555774 KIF24Q5T7B8 1368 aa16.98■□□□□ 0.31
SHMT2-222ENST00000555774 ABCC4O15439 1325 aa16.98■□□□□ 0.31
SHMT2-222ENST00000555774 ZBTB7BO15156 539 aaPredicted RBP16.98■□□□□ 0.31
SHMT2-222ENST00000555774 CHD1LQ86WJ1 897 aa16.98■□□□□ 0.31
SHMT2-222ENST00000555774 CFAP44Q96MT7 982 aa16.98■□□□□ 0.31
SHMT2-222ENST00000555774 SLKQ9H2G2 1235 aaPredicted RBP16.97■□□□□ 0.31
SHMT2-222ENST00000555774 MBIPQ9NS73 344 aa16.97■□□□□ 0.31
SHMT2-222ENST00000555774 FBLN1P23142 703 aa16.96■□□□□ 0.31
SHMT2-222ENST00000555774 MFAP1P55081 439 aaKnown RBP16.96■□□□□ 0.31
SHMT2-222ENST00000555774 API5Q9BZZ5 524 aaKnown RBP16.96■□□□□ 0.31
SHMT2-222ENST00000555774 ESF1Q9H501 851 aaKnown RBP16.96■□□□□ 0.31
SHMT2-222ENST00000555774 TXNDC2Q86VQ3 553 aa16.96■□□□□ 0.3
SHMT2-222ENST00000555774 TNRQ92752 1358 aa16.95■□□□□ 0.3
SHMT2-222ENST00000555774 BMP2KLQ5H9B9 411 aa16.95■□□□□ 0.3
SHMT2-222ENST00000555774 HAP1P54257 671 aaPredicted RBP16.95■□□□□ 0.3
SHMT2-222ENST00000555774 TWISTNBQ3B726 338 aaPredicted RBP16.95■□□□□ 0.3
SHMT2-222ENST00000555774 RBM25P49756 843 aaKnown RBP16.94■□□□□ 0.3
SHMT2-222ENST00000555774 MLECQ14165 292 aa16.94■□□□□ 0.3
SHMT2-222ENST00000555774 TMEM2Q9UHN6 1383 aa16.93■□□□□ 0.3
SHMT2-222ENST00000555774 TSPYL6Q8N831 410 aa16.93■□□□□ 0.3
SHMT2-222ENST00000555774 THUMPD2Q9BTF0 503 aaKnown RBP16.93■□□□□ 0.3
SHMT2-222ENST00000555774 IL27Q8NEV9 243 aa16.92■□□□□ 0.3
SHMT2-222ENST00000555774 ZRANB1Q9UGI0 708 aa16.92■□□□□ 0.3
SHMT2-222ENST00000555774 TOPAZ1Q8N9V7 1692 aa16.92■□□□□ 0.3
SHMT2-222ENST00000555774 LNPKQ9C0E8 428 aa16.92■□□□□ 0.3
SHMT2-222ENST00000555774 CHMP5Q9NZZ3 219 aa16.92■□□□□ 0.3
SHMT2-222ENST00000555774 UBR1Q8IWV7 1749 aa16.91■□□□□ 0.3
SHMT2-222ENST00000555774 EIF5BO60841 1220 aaKnown RBP16.91■□□□□ 0.3
SHMT2-222ENST00000555774 HSCBQ8IWL3 235 aa16.91■□□□□ 0.3
SHMT2-222ENST00000555774 SNX21Q969T3 373 aa16.91■□□□□ 0.3
SHMT2-222ENST00000555774 DLG5Q8TDM6 1919 aa16.91■□□□□ 0.3
SHMT2-222ENST00000555774 PRR36Q9H6K5 1346 aa16.91■□□□□ 0.3
SHMT2-222ENST00000555774 OVOS2A0A0J9YW53 1432 aa16.9■□□□□ 0.3
SHMT2-222ENST00000555774 OVOS2Q6IE36 1432 aa16.9■□□□□ 0.3
SHMT2-222ENST00000555774 RRS1Q15050 365 aaKnown RBP16.9■□□□□ 0.3
SHMT2-222ENST00000555774 ADAMTS13Q76LX8 1427 aa16.9■□□□□ 0.3
SHMT2-222ENST00000555774 NCOA3Q9Y6Q9 1424 aa16.9■□□□□ 0.3
SHMT2-222ENST00000555774 PLEKHG3A1L390 1219 aa16.89■□□□□ 0.29
SHMT2-222ENST00000555774 C8orf58Q8NAV2 365 aa16.89■□□□□ 0.29
SHMT2-222ENST00000555774 ROBO2Q9HCK4 1378 aa16.89■□□□□ 0.29
SHMT2-222ENST00000555774 PLEKHG1Q9ULL1 1385 aa16.89■□□□□ 0.29
SHMT2-222ENST00000555774 TTC21BQ7Z4L5 1316 aa16.89■□□□□ 0.29
SHMT2-222ENST00000555774 ANKRD45Q5TZF3 282 aa16.88■□□□□ 0.29
SHMT2-222ENST00000555774 NALCNQ8IZF0 1738 aa16.88■□□□□ 0.29
SHMT2-222ENST00000555774 KIAA0232Q92628 1395 aa16.88■□□□□ 0.29
SHMT2-222ENST00000555774 NCKAP5LQ9HCH0 1330 aa16.87■□□□□ 0.29
SHMT2-222ENST00000555774 EIF4A2Q14240 407 aaKnown RBP16.87■□□□□ 0.29
SHMT2-222ENST00000555774 BRPF3Q9ULD4 1205 aa16.87■□□□□ 0.29
SHMT2-222ENST00000555774 USP31Q70CQ4 1352 aa16.87■□□□□ 0.29
SHMT2-222ENST00000555774 L1TD1Q5T7N2 865 aaKnown RBP16.86■□□□□ 0.29
SHMT2-222ENST00000555774 USP6P35125 1406 aa16.86■□□□□ 0.29
SHMT2-222ENST00000555774 INTS3Q68E01 1043 aaKnown RBP16.86■□□□□ 0.29
SHMT2-222ENST00000555774 SIRT2Q8IXJ6 389 aa16.86■□□□□ 0.29
SHMT2-222ENST00000555774 RGPD1P0DJD0 1748 aa16.85■□□□□ 0.29
SHMT2-222ENST00000555774 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.85■□□□□ 0.29
SHMT2-222ENST00000555774 ELL2O00472 640 aaPredicted RBP16.85■□□□□ 0.29
SHMT2-222ENST00000555774 MCM4P33991 863 aa16.85■□□□□ 0.29
SHMT2-222ENST00000555774 C1orf115Q9H7X2 142 aa16.85■□□□□ 0.29
SHMT2-222ENST00000555774 FAM83GA6ND36 823 aa16.84■□□□□ 0.29
SHMT2-222ENST00000555774 CHL1O00533 1208 aa16.84■□□□□ 0.29
SHMT2-222ENST00000555774 CIZ1Q9ULV3 898 aaPredicted RBP16.84■□□□□ 0.29
SHMT2-222ENST00000555774 KIF13AQ9H1H9 1805 aa16.83■□□□□ 0.29
SHMT2-222ENST00000555774 ACEP12821 1306 aa16.83■□□□□ 0.29
SHMT2-222ENST00000555774 ARHGEF10O15013 1369 aa16.83■□□□□ 0.29
SHMT2-222ENST00000555774 SULT6B1Q6IMI4 303 aa16.83■□□□□ 0.28
SHMT2-222ENST00000555774 SSH2Q76I76 1423 aa16.83■□□□□ 0.28
SHMT2-222ENST00000555774 PTPRCP08575 1304 aa16.83■□□□□ 0.28
SHMT2-222ENST00000555774 DDIT3P35638 169 aa16.82■□□□□ 0.28
SHMT2-222ENST00000555774 DCTPP1Q9H773 170 aa16.82■□□□□ 0.28
SHMT2-222ENST00000555774 TTC21AQ8NDW8 1320 aa16.82■□□□□ 0.28
SHMT2-222ENST00000555774 RGS12O14924 1447 aa16.82■□□□□ 0.28
SHMT2-222ENST00000555774 CDC45O75419 566 aa16.81■□□□□ 0.28
SHMT2-222ENST00000555774 PEAK1Q9H792 1746 aa16.81■□□□□ 0.28
SHMT2-222ENST00000555774 DDX11L8A8MPP1 907 aa16.81■□□□□ 0.28
SHMT2-222ENST00000555774 DCTN1Q14203 1278 aa16.81■□□□□ 0.28
SHMT2-222ENST00000555774 AEBP1Q8IUX7 1158 aa16.81■□□□□ 0.28
SHMT2-222ENST00000555774 RPAP2Q8IXW5 612 aaPredicted RBP16.81■□□□□ 0.28
SHMT2-222ENST00000555774 TBC1D9Q6ZT07 1266 aa16.8■□□□□ 0.28
SHMT2-222ENST00000555774 ANKRD44Q8N8A2 993 aa16.8■□□□□ 0.28
SHMT2-222ENST00000555774 SPRYD3Q8NCJ5 442 aa16.8■□□□□ 0.28
SHMT2-222ENST00000555774 CRB1P82279 1406 aa16.79■□□□□ 0.28
SHMT2-222ENST00000555774 ATP10DQ9P241 1426 aa16.79■□□□□ 0.28
SHMT2-222ENST00000555774 KIF2CQ99661 725 aa16.78■□□□□ 0.28
SHMT2-222ENST00000555774 HSP90AB1P08238 724 aaKnown RBP16.78■□□□□ 0.28
SHMT2-222ENST00000555774 SLIT1O75093 1534 aa16.77■□□□□ 0.28
SHMT2-222ENST00000555774 SBNO1A3KN83 1393 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms