RNA–Protein interactions for RNA: ENST00000555405.5

NEK9-205, Transcript of NIMA related kinase 9, humanhuman

TSL 1 (best)

Gene NEK9, Length 3,357 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-205ENST00000555405 FLT4P35916 1363 aa13.39□□□□□ -0.27
NEK9-205ENST00000555405 SOS2Q07890 1332 aaPredicted RBP13.39□□□□□ -0.27
NEK9-205ENST00000555405 A0A0G2JS52 829 aa13.39□□□□□ -0.27
NEK9-205ENST00000555405 NBPF6Q5VWK0 638 aa13.38□□□□□ -0.27
NEK9-205ENST00000555405 TOM1L2Q6ZVM7 507 aa13.38□□□□□ -0.27
NEK9-205ENST00000555405 NBPF4Q96M43 638 aa13.38□□□□□ -0.27
NEK9-205ENST00000555405 ZBED9Q6R2W3 1325 aa13.38□□□□□ -0.27
NEK9-205ENST00000555405 SUPT16HQ9Y5B9 1047 aaKnown RBP13.38□□□□□ -0.27
NEK9-205ENST00000555405 MAP2P11137 1827 aaKnown RBP13.38□□□□□ -0.27
NEK9-205ENST00000555405 AATKQ6ZMQ8 1374 aa13.37□□□□□ -0.27
NEK9-205ENST00000555405 USP31Q70CQ4 1352 aa13.37□□□□□ -0.27
NEK9-205ENST00000555405 FAM83GA6ND36 823 aa13.37□□□□□ -0.27
NEK9-205ENST00000555405 FCHSD2O94868 740 aa13.37□□□□□ -0.27
NEK9-205ENST00000555405 SBNO1A3KN83 1393 aa13.37□□□□□ -0.27
NEK9-205ENST00000555405 TMPOP42166 694 aaKnown RBP13.37□□□□□ -0.27
NEK9-205ENST00000555405 PNNQ9H307 717 aaKnown RBP13.37□□□□□ -0.27
NEK9-205ENST00000555405 TNS3Q68CZ2 1445 aa13.37□□□□□ -0.27
NEK9-205ENST00000555405 MYT1Q01538 1121 aa13.36□□□□□ -0.27
NEK9-205ENST00000555405 ARHGEF10O15013 1369 aa13.36□□□□□ -0.27
NEK9-205ENST00000555405 RSPH6AQ9H0K4 717 aa13.36□□□□□ -0.27
NEK9-205ENST00000555405 BTG4Q9NY30 223 aa13.35□□□□□ -0.27
NEK9-205ENST00000555405 GTF3C3Q9Y5Q9 886 aa13.35□□□□□ -0.27
NEK9-205ENST00000555405 TOPAZ1Q8N9V7 1692 aa13.35□□□□□ -0.27
NEK9-205ENST00000555405 AKAP12Q02952 1782 aa13.35□□□□□ -0.27
NEK9-205ENST00000555405 GOLGA2Q08379 1002 aa13.35□□□□□ -0.27
NEK9-205ENST00000555405 MON2Q7Z3U7 1717 aa13.35□□□□□ -0.27
NEK9-205ENST00000555405 XIRP1Q702N8 1843 aaKnown RBP13.35□□□□□ -0.27
NEK9-205ENST00000555405 KIF20BQ96Q89 1820 aa13.35□□□□□ -0.27
NEK9-205ENST00000555405 LTBP4Q8N2S1 1624 aa13.34□□□□□ -0.27
NEK9-205ENST00000555405 ELL2O00472 640 aaPredicted RBP13.34□□□□□ -0.27
NEK9-205ENST00000555405 C8orf37Q96NL8 207 aa13.34□□□□□ -0.27
NEK9-205ENST00000555405 HSPA1LP34931 641 aa13.34□□□□□ -0.27
NEK9-205ENST00000555405 MCM10Q7L590 875 aa13.34□□□□□ -0.27
NEK9-205ENST00000555405 MEX3CQ5U5Q3 659 aaKnown RBP13.34□□□□□ -0.27
NEK9-205ENST00000555405 WWC1Q8IX03 1113 aa13.34□□□□□ -0.27
NEK9-205ENST00000555405 SPINK5Q9NQ38 1064 aaPredicted RBP13.34□□□□□ -0.27
NEK9-205ENST00000555405 RAPGEF4Q8WZA2 1011 aa13.33□□□□□ -0.28
NEK9-205ENST00000555405 RTF1Q92541 710 aaKnown RBP13.33□□□□□ -0.28
NEK9-205ENST00000555405 NGLY1Q96IV0 654 aa13.33□□□□□ -0.28
NEK9-205ENST00000555405 TSR2Q969E8 191 aaKnown RBP13.33□□□□□ -0.28
NEK9-205ENST00000555405 PIK3C2AO00443 1686 aa13.33□□□□□ -0.28
NEK9-205ENST00000555405 PNPLA6Q8IY17 1366 aa13.32□□□□□ -0.28
NEK9-205ENST00000555405 MIS18AQ9NYP9 233 aa13.32□□□□□ -0.28
NEK9-205ENST00000555405 NEFLP07196 543 aa13.31□□□□□ -0.28
NEK9-205ENST00000555405 MTHFSDQ2M296 383 aaKnown RBP13.31□□□□□ -0.28
NEK9-205ENST00000555405 LARP1Q6PKG0 1096 aaKnown RBP13.31□□□□□ -0.28
NEK9-205ENST00000555405 PLEKHF1Q96S99 279 aa13.31□□□□□ -0.28
NEK9-205ENST00000555405 USP19O94966 1318 aa13.31□□□□□ -0.28
NEK9-205ENST00000555405 INSRP06213 1382 aa13.31□□□□□ -0.28
NEK9-205ENST00000555405 SMG6Q86US8 1419 aaKnown RBP13.31□□□□□ -0.28
NEK9-205ENST00000555405 NFE2L2Q16236 605 aa13.31□□□□□ -0.28
NEK9-205ENST00000555405 TCERG1O14776 1098 aaKnown RBP13.3□□□□□ -0.28
NEK9-205ENST00000555405 DDX54Q8TDD1 881 aaKnown RBP13.3□□□□□ -0.28
NEK9-205ENST00000555405 PXDNQ92626 1479 aa13.3□□□□□ -0.28
NEK9-205ENST00000555405 ZNF530Q6P9A1 599 aaPredicted RBP13.3□□□□□ -0.28
NEK9-205ENST00000555405 KAT6BQ8WYB5 2073 aa13.29□□□□□ -0.28
NEK9-205ENST00000555405 BCL2L13Q9BXK5 485 aa13.29□□□□□ -0.28
NEK9-205ENST00000555405 CDK12Q9NYV4 1490 aaPredicted RBP13.29□□□□□ -0.28
NEK9-205ENST00000555405 ERBB3P21860 1342 aa13.29□□□□□ -0.28
NEK9-205ENST00000555405 FKBP8Q14318 412 aa13.29□□□□□ -0.28
NEK9-205ENST00000555405 MPRIPQ6WCQ1 1025 aa13.28□□□□□ -0.28
NEK9-205ENST00000555405 TATP17735 454 aaPredicted RBP13.28□□□□□ -0.28
NEK9-205ENST00000555405 TRIM35Q9UPQ4 493 aa13.28□□□□□ -0.28
NEK9-205ENST00000555405 C1orf141Q5JVX7 400 aa13.27□□□□□ -0.28
NEK9-205ENST00000555405 ROBO1Q9Y6N7 1651 aa13.27□□□□□ -0.29
NEK9-205ENST00000555405 PLIN1O60240 522 aa13.27□□□□□ -0.29
NEK9-205ENST00000555405 NRKQ7Z2Y5 1582 aa13.27□□□□□ -0.29
NEK9-205ENST00000555405 KIF1AQ12756 1690 aa13.27□□□□□ -0.29
NEK9-205ENST00000555405 IGSF1Q8N6C5 1336 aa13.26□□□□□ -0.29
NEK9-205ENST00000555405 PLEKHO1Q53GL0 409 aaPredicted RBP13.26□□□□□ -0.29
NEK9-205ENST00000555405 BLMP54132 1417 aaPredicted RBP13.26□□□□□ -0.29
NEK9-205ENST00000555405 COL3A1P02461 1466 aaPredicted RBP13.25□□□□□ -0.29
NEK9-205ENST00000555405 GAS2L2Q8NHY3 880 aa13.25□□□□□ -0.29
NEK9-205ENST00000555405 FRAT1Q92837 279 aaPredicted RBP13.25□□□□□ -0.29
NEK9-205ENST00000555405 E9PSI1 815 aa13.24□□□□□ -0.29
NEK9-205ENST00000555405 CANXP27824 592 aaKnown RBP13.24□□□□□ -0.29
NEK9-205ENST00000555405 SLFN5Q08AF3 891 aa13.24□□□□□ -0.29
NEK9-205ENST00000555405 PDE3BQ13370 1112 aa13.24□□□□□ -0.29
NEK9-205ENST00000555405 NECTIN2Q92692 538 aa13.24□□□□□ -0.29
NEK9-205ENST00000555405 RCAN3Q9UKA8 241 aa13.24□□□□□ -0.29
NEK9-205ENST00000555405 MED1Q15648 1581 aaPredicted RBP13.24□□□□□ -0.29
NEK9-205ENST00000555405 LGR6Q9HBX8 967 aa13.24□□□□□ -0.29
NEK9-205ENST00000555405 EXOSC9Q06265 439 aaKnown RBP13.24□□□□□ -0.29
NEK9-205ENST00000555405 ANKRD26Q9UPS8 1709 aa13.24□□□□□ -0.29
NEK9-205ENST00000555405 GNAT3A8MTJ3 354 aa13.23□□□□□ -0.29
NEK9-205ENST00000555405 TEFQ10587 303 aa13.23□□□□□ -0.29
NEK9-205ENST00000555405 DUSP27Q5VZP5 1158 aa13.23□□□□□ -0.29
NEK9-205ENST00000555405 PEAK1Q9H792 1746 aa13.23□□□□□ -0.29
NEK9-205ENST00000555405 LMOD3Q0VAK6 560 aa13.23□□□□□ -0.29
NEK9-205ENST00000555405 SYTL4Q96C24 671 aaPredicted RBP13.23□□□□□ -0.29
NEK9-205ENST00000555405 MYH16Q9H6N6 1097 aa13.23□□□□□ -0.29
NEK9-205ENST00000555405 KRT24Q2M2I5 525 aa13.22□□□□□ -0.29
NEK9-205ENST00000555405 TSPYL4Q9UJ04 414 aa13.21□□□□□ -0.29
NEK9-205ENST00000555405 RTL1A6NKG5 1358 aa13.21□□□□□ -0.29
NEK9-205ENST00000555405 WDR17Q8IZU2 1322 aa13.21□□□□□ -0.29
NEK9-205ENST00000555405 NFAT5O94916 1531 aa13.21□□□□□ -0.29
NEK9-205ENST00000555405 WDR63Q8IWG1 891 aa13.21□□□□□ -0.3
NEK9-205ENST00000555405 BCAR3O75815 825 aa13.2□□□□□ -0.3
NEK9-205ENST00000555405 SPG7Q9UQ90 795 aa13.2□□□□□ -0.3
NEK9-205ENST00000555405 TRPM3Q9HCF6 1732 aaPredicted RBP13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms