RNA–Protein interactions for RNA: ENST00000554659.5

VTI1B-204, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VTI1B, Length 5,351 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-204ENST00000554659 FMNL2Q96PY5 1086 aa16.57■□□□□ 0.24
VTI1B-204ENST00000554659 PRG4Q92954 1404 aaPredicted RBP16.57■□□□□ 0.24
VTI1B-204ENST00000554659 ZSCAN31Q96LW9 406 aaPredicted RBP16.57■□□□□ 0.24
VTI1B-204ENST00000554659 CCDC43Q96MW1 224 aaKnown RBP16.57■□□□□ 0.24
VTI1B-204ENST00000554659 LEKR1Q6ZMV7 388 aa16.57■□□□□ 0.24
VTI1B-204ENST00000554659 CTDP1Q9Y5B0 961 aaPredicted RBP16.57■□□□□ 0.24
VTI1B-204ENST00000554659 CDK19Q9BWU1 502 aa16.56■□□□□ 0.24
VTI1B-204ENST00000554659 GPRASP1Q5JY77 1395 aa16.56■□□□□ 0.24
VTI1B-204ENST00000554659 FCHSD2O94868 740 aa16.56■□□□□ 0.24
VTI1B-204ENST00000554659 AXDND1Q5T1B0 1012 aaPredicted RBP16.56■□□□□ 0.24
VTI1B-204ENST00000554659 CYB5RLQ6IPT4 315 aa16.56■□□□□ 0.24
VTI1B-204ENST00000554659 CCDC112Q8NEF3 446 aa16.56■□□□□ 0.24
VTI1B-204ENST00000554659 ATAD2Q6PL18 1390 aa16.56■□□□□ 0.24
VTI1B-204ENST00000554659 ANKRD30BQ9BXX2 1392 aa16.56■□□□□ 0.24
VTI1B-204ENST00000554659 HSP90AB2PQ58FF8 381 aa16.55■□□□□ 0.24
VTI1B-204ENST00000554659 ZFYVE27Q5T4F4 411 aa16.55■□□□□ 0.24
VTI1B-204ENST00000554659 ABTB2Q8N961 1025 aa16.55■□□□□ 0.24
VTI1B-204ENST00000554659 RPGRIP1LQ68CZ1 1315 aa16.55■□□□□ 0.24
VTI1B-204ENST00000554659 EPS15P42566 896 aa16.55■□□□□ 0.24
VTI1B-204ENST00000554659 CABP1Q9NZU7 370 aa16.55■□□□□ 0.24
VTI1B-204ENST00000554659 LARP1BQ659C4 914 aaKnown RBP16.55■□□□□ 0.24
VTI1B-204ENST00000554659 TXLNAP40222 546 aa16.55■□□□□ 0.24
VTI1B-204ENST00000554659 PLCD4Q9BRC7 762 aa16.55■□□□□ 0.24
VTI1B-204ENST00000554659 CEBPZQ03701 1054 aaKnown RBP16.54■□□□□ 0.24
VTI1B-204ENST00000554659 DACH1Q9UI36 760 aa16.54■□□□□ 0.24
VTI1B-204ENST00000554659 UQCRHLA0A096LP55 91 aa16.54■□□□□ 0.24
VTI1B-204ENST00000554659 UQCRHP07919 91 aa16.54■□□□□ 0.24
VTI1B-204ENST00000554659 HSP90AB3PQ58FF7 597 aa16.53■□□□□ 0.24
VTI1B-204ENST00000554659 CCDC158Q5M9N0 1113 aa16.53■□□□□ 0.24
VTI1B-204ENST00000554659 RBM33Q96EV2 1170 aaKnown RBP16.53■□□□□ 0.24
VTI1B-204ENST00000554659 RRP9O43818 475 aaKnown RBP16.53■□□□□ 0.24
VTI1B-204ENST00000554659 SERPINC1P01008 464 aa16.53■□□□□ 0.24
VTI1B-204ENST00000554659 FAM69CQ0P6D2 419 aa16.53■□□□□ 0.24
VTI1B-204ENST00000554659 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.53■□□□□ 0.24
VTI1B-204ENST00000554659 MAGEC2Q9UBF1 373 aaPredicted RBP16.53■□□□□ 0.24
VTI1B-204ENST00000554659 ZSCAN30Q86W11 494 aa16.53■□□□□ 0.24
VTI1B-204ENST00000554659 FYB1O15117 783 aa16.52■□□□□ 0.24
VTI1B-204ENST00000554659 MSH5O43196 834 aa16.52■□□□□ 0.24
VTI1B-204ENST00000554659 ATF3P18847 181 aa16.52■□□□□ 0.24
VTI1B-204ENST00000554659 ME1P48163 572 aa16.52■□□□□ 0.24
VTI1B-204ENST00000554659 BLOC1S2Q6QNY1 142 aa16.52■□□□□ 0.24
VTI1B-204ENST00000554659 TMEM57Q8N5G2 664 aa16.52■□□□□ 0.24
VTI1B-204ENST00000554659 SLC52A1Q9NWF4 448 aa16.52■□□□□ 0.24
VTI1B-204ENST00000554659 PPP6R1Q9UPN7 881 aa16.52■□□□□ 0.24
VTI1B-204ENST00000554659 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.52■□□□□ 0.24
VTI1B-204ENST00000554659 PDRG1Q9NUG6 133 aa16.52■□□□□ 0.24
VTI1B-204ENST00000554659 MYO6Q9UM54 1294 aa16.52■□□□□ 0.24
VTI1B-204ENST00000554659 TMPOP42166 694 aaKnown RBP16.51■□□□□ 0.23
VTI1B-204ENST00000554659 CFAP45Q9UL16 551 aa16.51■□□□□ 0.23
VTI1B-204ENST00000554659 NSD3Q9BZ95 1437 aa16.51■□□□□ 0.23
VTI1B-204ENST00000554659 POLA1P09884 1462 aaPredicted RBP16.51■□□□□ 0.23
VTI1B-204ENST00000554659 NKTRP30414 1462 aaKnown RBP16.51■□□□□ 0.23
VTI1B-204ENST00000554659 CBFA2T2O43439 604 aa16.51■□□□□ 0.23
VTI1B-204ENST00000554659 ATP2B1P20020 1258 aa16.51■□□□□ 0.23
VTI1B-204ENST00000554659 NFE2L2Q16236 605 aa16.51■□□□□ 0.23
VTI1B-204ENST00000554659 TTC39AQ5SRH9 613 aa16.51■□□□□ 0.23
VTI1B-204ENST00000554659 SPATA32Q96LK8 384 aa16.51■□□□□ 0.23
VTI1B-204ENST00000554659 NUP62CLQ9H1M0 184 aa16.51■□□□□ 0.23
VTI1B-204ENST00000554659 STK3Q13188 491 aa16.51■□□□□ 0.23
VTI1B-204ENST00000554659 KDM4AO75164 1064 aa16.51■□□□□ 0.23
VTI1B-204ENST00000554659 MPNDQ8N594 471 aa16.5■□□□□ 0.23
VTI1B-204ENST00000554659 SLC3A2P08195 630 aaKnown RBP16.5■□□□□ 0.23
VTI1B-204ENST00000554659 KRT32Q14532 448 aa16.5■□□□□ 0.23
VTI1B-204ENST00000554659 KIF6Q6ZMV9 814 aa16.5■□□□□ 0.23
VTI1B-204ENST00000554659 RTEL1-TNFRSF6BF6WH68 1400 aa16.5■□□□□ 0.23
VTI1B-204ENST00000554659 BRPF1P55201 1214 aaPredicted RBP16.5■□□□□ 0.23
VTI1B-204ENST00000554659 CEP57L1Q8IYX8 460 aa16.5■□□□□ 0.23
VTI1B-204ENST00000554659 TRIM22Q8IYM9 498 aa16.49■□□□□ 0.23
VTI1B-204ENST00000554659 PPFIBP1Q86W92 1011 aa16.49■□□□□ 0.23
VTI1B-204ENST00000554659 JAKMIP1Q96N16 626 aaKnown RBP16.49■□□□□ 0.23
VTI1B-204ENST00000554659 ZNHIT6Q9NWK9 470 aaKnown RBP16.49■□□□□ 0.23
VTI1B-204ENST00000554659 ABCC11Q96J66 1382 aa16.49■□□□□ 0.23
VTI1B-204ENST00000554659 SRGAP3O43295 1099 aa16.49■□□□□ 0.23
VTI1B-204ENST00000554659 RARSP54136 660 aaKnown RBP16.49■□□□□ 0.23
VTI1B-204ENST00000554659 ALDH1L2Q3SY69 923 aa16.49■□□□□ 0.23
VTI1B-204ENST00000554659 TXNDC2Q86VQ3 553 aa16.48■□□□□ 0.23
VTI1B-204ENST00000554659 MAP4K4O95819 1239 aaPredicted RBP16.48■□□□□ 0.23
VTI1B-204ENST00000554659 CNKSR2Q8WXI2 1034 aa16.48■□□□□ 0.23
VTI1B-204ENST00000554659 SAMD1Q6SPF0 538 aaPredicted RBP16.48■□□□□ 0.23
VTI1B-204ENST00000554659 AACSQ86V21 672 aa16.48■□□□□ 0.23
VTI1B-204ENST00000554659 CCDC141Q6ZP82 1450 aa16.48■□□□□ 0.23
VTI1B-204ENST00000554659 EPRSP07814 1512 aaKnown RBP16.47■□□□□ 0.23
VTI1B-204ENST00000554659 TOPBP1Q92547 1522 aa16.47■□□□□ 0.23
VTI1B-204ENST00000554659 MAP3K1Q13233 1512 aa16.47■□□□□ 0.23
VTI1B-204ENST00000554659 CDK5RAP3Q96JB5 506 aa16.47■□□□□ 0.23
VTI1B-204ENST00000554659 IFT140Q96RY7 1462 aa16.47■□□□□ 0.23
VTI1B-204ENST00000554659 ERLIN1O75477 346 aa16.46■□□□□ 0.23
VTI1B-204ENST00000554659 TATP17735 454 aaPredicted RBP16.46■□□□□ 0.23
VTI1B-204ENST00000554659 NCOA1Q15788 1441 aa16.46■□□□□ 0.23
VTI1B-204ENST00000554659 CDKL5O76039 1030 aa16.46■□□□□ 0.23
VTI1B-204ENST00000554659 LRPPRCP42704 1394 aaKnown RBP16.46■□□□□ 0.23
VTI1B-204ENST00000554659 C20orf194Q5TEA3 1177 aa16.46■□□□□ 0.23
VTI1B-204ENST00000554659 ZSCAN25Q6NSZ9 544 aa16.46■□□□□ 0.23
VTI1B-204ENST00000554659 CWC27Q6UX04 472 aaKnown RBP16.46■□□□□ 0.23
VTI1B-204ENST00000554659 NACAP1Q9BZK3 213 aa16.46■□□□□ 0.23
VTI1B-204ENST00000554659 SIL1Q9H173 461 aa16.46■□□□□ 0.23
VTI1B-204ENST00000554659 SYCE3A1L190 88 aa16.46■□□□□ 0.23
VTI1B-204ENST00000554659 C11orf95C9JLR9 678 aaPredicted RBP16.46■□□□□ 0.22
VTI1B-204ENST00000554659 ZNF530Q6P9A1 599 aaPredicted RBP16.46■□□□□ 0.22
VTI1B-204ENST00000554659 MAP3K11Q16584 847 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms