RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 SYCE3A1L190 88 aa6□□□□□ -1.45
LIMA1-214ENST00000552783 ZHX1Q9UKY1 873 aaPredicted RBP6□□□□□ -1.45
LIMA1-214ENST00000552783 CFAP74Q9C0B2 1584 aa6□□□□□ -1.45
LIMA1-214ENST00000552783 PDZRN4Q6ZMN7 1036 aaPredicted RBP6□□□□□ -1.45
LIMA1-214ENST00000552783 ZNF500O60304 480 aaPredicted RBP6□□□□□ -1.45
LIMA1-214ENST00000552783 C17orf53Q8N3J3 647 aaPredicted RBP6□□□□□ -1.45
LIMA1-214ENST00000552783 KIF16BQ96L93 1317 aa5.99□□□□□ -1.45
LIMA1-214ENST00000552783 APBB1O00213 710 aa5.99□□□□□ -1.45
LIMA1-214ENST00000552783 FOXD4L6Q3SYB3 417 aaPredicted RBP5.99□□□□□ -1.45
LIMA1-214ENST00000552783 FOXD4L3Q6VB84 417 aaPredicted RBP5.99□□□□□ -1.45
LIMA1-214ENST00000552783 PLEKHM2Q8IWE5 1019 aa5.99□□□□□ -1.45
LIMA1-214ENST00000552783 PHACTR3Q96KR7 559 aa5.99□□□□□ -1.45
LIMA1-214ENST00000552783 ZNF830Q96NB3 372 aaPredicted RBP5.99□□□□□ -1.45
LIMA1-214ENST00000552783 UHRF1BP1LA0JNW5 1464 aa5.99□□□□□ -1.45
LIMA1-214ENST00000552783 PLCH2O75038 1416 aa5.99□□□□□ -1.45
LIMA1-214ENST00000552783 IBTKQ9P2D0 1353 aaPredicted RBP5.99□□□□□ -1.45
LIMA1-214ENST00000552783 ZKSCAN5Q9Y2L8 839 aa5.99□□□□□ -1.45
LIMA1-214ENST00000552783 KIAA1210Q9ULL0 1709 aa5.99□□□□□ -1.45
LIMA1-214ENST00000552783 EVC2Q86UK5 1308 aa5.99□□□□□ -1.45
LIMA1-214ENST00000552783 SMARCA5O60264 1052 aaPredicted RBP5.99□□□□□ -1.45
LIMA1-214ENST00000552783 USP26Q9BXU7 913 aa5.99□□□□□ -1.45
LIMA1-214ENST00000552783 SBNO2Q9Y2G9 1366 aa5.98□□□□□ -1.45
LIMA1-214ENST00000552783 ABCC1P33527 1531 aa5.98□□□□□ -1.45
LIMA1-214ENST00000552783 FANCAO15360 1455 aa5.98□□□□□ -1.45
LIMA1-214ENST00000552783 GOLGA6L22H0YM25 854 aa5.98□□□□□ -1.45
LIMA1-214ENST00000552783 VGFO15240 615 aaPredicted RBP5.98□□□□□ -1.45
LIMA1-214ENST00000552783 CT47B1P0C2W7 299 aaPredicted RBP5.98□□□□□ -1.45
LIMA1-214ENST00000552783 QRICH2Q9H0J4 1663 aa5.98□□□□□ -1.45
LIMA1-214ENST00000552783 ADGRL1O94910 1474 aa5.98□□□□□ -1.45
LIMA1-214ENST00000552783 COL3A1P02461 1466 aaPredicted RBP5.98□□□□□ -1.45
LIMA1-214ENST00000552783 A0A0U1RQG5 324 aaPredicted RBP5.98□□□□□ -1.45
LIMA1-214ENST00000552783 DTNBO60941 627 aa5.98□□□□□ -1.45
LIMA1-214ENST00000552783 VAMP4O75379 141 aa5.98□□□□□ -1.45
LIMA1-214ENST00000552783 HMOX1P09601 288 aa5.98□□□□□ -1.45
LIMA1-214ENST00000552783 TPRNQ4KMQ1 711 aa5.98□□□□□ -1.45
LIMA1-214ENST00000552783 ANP32BQ92688 251 aaKnown RBP5.98□□□□□ -1.45
LIMA1-214ENST00000552783 STAC3Q96MF2 364 aa5.98□□□□□ -1.45
LIMA1-214ENST00000552783 A0A1W2PP64 1363 aa5.98□□□□□ -1.45
LIMA1-214ENST00000552783 MYOM2P54296 1465 aa5.98□□□□□ -1.45
LIMA1-214ENST00000552783 CDC45O75419 566 aa5.98□□□□□ -1.45
LIMA1-214ENST00000552783 MRPL50Q8N5N7 158 aaKnown RBP5.98□□□□□ -1.45
LIMA1-214ENST00000552783 C14orf93Q9H972 538 aaKnown RBP5.98□□□□□ -1.45
LIMA1-214ENST00000552783 GDPD2Q9HCC8 539 aa5.98□□□□□ -1.45
LIMA1-214ENST00000552783 RNF216Q9NWF9 866 aaPredicted RBP5.98□□□□□ -1.45
LIMA1-214ENST00000552783 ZFYVE16Q7Z3T8 1539 aa5.98□□□□□ -1.45
LIMA1-214ENST00000552783 ABCC11Q96J66 1382 aa5.97□□□□□ -1.45
LIMA1-214ENST00000552783 MYO3AQ8NEV4 1616 aa5.97□□□□□ -1.45
LIMA1-214ENST00000552783 TULP4Q9NRJ4 1543 aa5.97□□□□□ -1.45
LIMA1-214ENST00000552783 FYB1O15117 783 aa5.97□□□□□ -1.45
LIMA1-214ENST00000552783 KRT24Q2M2I5 525 aa5.97□□□□□ -1.45
LIMA1-214ENST00000552783 HDGFL2Q7Z4V5 671 aaPredicted RBP5.97□□□□□ -1.45
LIMA1-214ENST00000552783 ZNF710Q8N1W2 664 aa5.97□□□□□ -1.45
LIMA1-214ENST00000552783 PODXL2Q9NZ53 605 aa5.97□□□□□ -1.45
LIMA1-214ENST00000552783 KNDC1Q76NI1 1749 aa5.97□□□□□ -1.45
LIMA1-214ENST00000552783 MED14O60244 1454 aa5.97□□□□□ -1.45
LIMA1-214ENST00000552783 NRXN1Q9ULB1 1477 aa5.97□□□□□ -1.45
LIMA1-214ENST00000552783 ADGRB1O14514 1584 aa5.97□□□□□ -1.45
LIMA1-214ENST00000552783 TET3O43151 1660 aa5.97□□□□□ -1.45
LIMA1-214ENST00000552783 PPRC1Q5VV67 1664 aaKnown RBP5.97□□□□□ -1.45
LIMA1-214ENST00000552783 ARHGAP31Q2M1Z3 1444 aa5.97□□□□□ -1.45
LIMA1-214ENST00000552783 IPO8O15397 1037 aaKnown RBP5.97□□□□□ -1.45
LIMA1-214ENST00000552783 C8orf58Q8NAV2 365 aa5.97□□□□□ -1.45
LIMA1-214ENST00000552783 PRAM1Q96QH2 718 aa5.97□□□□□ -1.45
LIMA1-214ENST00000552783 IFT172Q9UG01 1749 aa5.97□□□□□ -1.45
LIMA1-214ENST00000552783 PRKAR2BP31323 418 aa5.97□□□□□ -1.45
LIMA1-214ENST00000552783 TSHZ3Q63HK5 1081 aa5.97□□□□□ -1.45
LIMA1-214ENST00000552783 NOL8Q76FK4 1167 aaKnown RBP5.97□□□□□ -1.45
LIMA1-214ENST00000552783 GCC1Q96CN9 775 aa5.97□□□□□ -1.45
LIMA1-214ENST00000552783 TERF2IPQ9NYB0 399 aa5.97□□□□□ -1.45
LIMA1-214ENST00000552783 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP5.97□□□□□ -1.45
LIMA1-214ENST00000552783 ZC3H13Q5T200 1668 aaKnown RBP5.97□□□□□ -1.45
LIMA1-214ENST00000552783 ANKRD36BQ8N2N9 1353 aa5.96□□□□□ -1.46
LIMA1-214ENST00000552783 FAM83GA6ND36 823 aa5.96□□□□□ -1.46
LIMA1-214ENST00000552783 GADD45BO75293 160 aaPredicted RBP5.96□□□□□ -1.46
LIMA1-214ENST00000552783 SDSP20132 328 aa5.96□□□□□ -1.46
LIMA1-214ENST00000552783 TERF1P54274 439 aa5.96□□□□□ -1.46
LIMA1-214ENST00000552783 LRSAM1Q6UWE0 723 aa5.96□□□□□ -1.46
LIMA1-214ENST00000552783 DEPDC5O75140 1603 aa5.96□□□□□ -1.46
LIMA1-214ENST00000552783 MROH1Q8NDA8 1641 aa5.96□□□□□ -1.46
LIMA1-214ENST00000552783 ZSCAN20P17040 1043 aaPredicted RBP5.96□□□□□ -1.46
LIMA1-214ENST00000552783 DCTN1Q14203 1278 aa5.96□□□□□ -1.46
LIMA1-214ENST00000552783 RABEP1Q15276 862 aa5.96□□□□□ -1.46
LIMA1-214ENST00000552783 HS1BP3Q53T59 392 aa5.96□□□□□ -1.46
LIMA1-214ENST00000552783 TTC22Q5TAA0 569 aa5.96□□□□□ -1.46
LIMA1-214ENST00000552783 VWDEQ8N2E2 1590 aa5.96□□□□□ -1.46
LIMA1-214ENST00000552783 ALDH1L2Q3SY69 923 aa5.95□□□□□ -1.46
LIMA1-214ENST00000552783 MBIPQ9NS73 344 aa5.95□□□□□ -1.46
LIMA1-214ENST00000552783 INO80Q9ULG1 1556 aaPredicted RBP5.95□□□□□ -1.46
LIMA1-214ENST00000552783 NUCB2P80303 420 aa5.95□□□□□ -1.46
LIMA1-214ENST00000552783 ATP2B3Q16720 1220 aa5.95□□□□□ -1.46
LIMA1-214ENST00000552783 TTC12Q9H892 705 aaPredicted RBP5.95□□□□□ -1.46
LIMA1-214ENST00000552783 IL16Q14005 1332 aa5.95□□□□□ -1.46
LIMA1-214ENST00000552783 KIF1BO60333 1816 aa5.95□□□□□ -1.46
LIMA1-214ENST00000552783 DYNC1I1O14576 645 aa5.95□□□□□ -1.46
LIMA1-214ENST00000552783 IGSF3O75054 1194 aa5.95□□□□□ -1.46
LIMA1-214ENST00000552783 PTMSP20962 102 aa5.95□□□□□ -1.46
LIMA1-214ENST00000552783 CBX1P83916 185 aa5.95□□□□□ -1.46
LIMA1-214ENST00000552783 IDI1Q13907 227 aa5.95□□□□□ -1.46
LIMA1-214ENST00000552783 FBXO31Q5XUX0 539 aaPredicted RBP5.95□□□□□ -1.46
LIMA1-214ENST00000552783 C14orf37Q86TY3 774 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 131 ms