RNA–Protein interactions for RNA: ENST00000552620.1

CHMP4A-210, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 716 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-210ENST00000552620 RPRD2Q5VT52 1461 aaKnown RBP8.19□□□□□ -1.1
CHMP4A-210ENST00000552620 CDK13Q14004 1512 aaKnown RBP8.19□□□□□ -1.1
CHMP4A-210ENST00000552620 DISP1Q96F81 1524 aa8.19□□□□□ -1.1
CHMP4A-210ENST00000552620 BHMG1C9JSJ3 638 aaPredicted RBP8.19□□□□□ -1.1
CHMP4A-210ENST00000552620 LRCH3Q96II8 777 aa8.19□□□□□ -1.1
CHMP4A-210ENST00000552620 NCOA1Q15788 1441 aa8.19□□□□□ -1.1
CHMP4A-210ENST00000552620 CNTLNQ9NXG0 1405 aa8.19□□□□□ -1.1
CHMP4A-210ENST00000552620 KIAA0556O60303 1618 aa8.18□□□□□ -1.1
CHMP4A-210ENST00000552620 DNMT1P26358 1616 aaKnown RBP8.18□□□□□ -1.1
CHMP4A-210ENST00000552620 CCDC7Q96M83 1385 aa8.18□□□□□ -1.1
CHMP4A-210ENST00000552620 TROQ12816 1431 aaPredicted RBP8.18□□□□□ -1.1
CHMP4A-210ENST00000552620 HNRNPUQ00839 825 aaKnown RBP eCLIP8.17□□□□□ -1.1
CHMP4A-210ENST00000552620 CTDSPL2Q05D32 466 aa8.17□□□□□ -1.1
CHMP4A-210ENST00000552620 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.17□□□□□ -1.1
CHMP4A-210ENST00000552620 ARID4BQ4LE39 1312 aaPredicted RBP8.17□□□□□ -1.1
CHMP4A-210ENST00000552620 NUP153P49790 1475 aaKnown RBP8.17□□□□□ -1.1
CHMP4A-210ENST00000552620 GRIN2AQ12879 1464 aa8.17□□□□□ -1.1
CHMP4A-210ENST00000552620 KDM6BO15054 1643 aa8.17□□□□□ -1.1
CHMP4A-210ENST00000552620 RAPGEF6Q8TEU7 1601 aa8.17□□□□□ -1.1
CHMP4A-210ENST00000552620 GOLGA8CPA6NN73 597 aa8.16□□□□□ -1.1
CHMP4A-210ENST00000552620 ACTN4O43707 911 aaKnown RBP8.16□□□□□ -1.1
CHMP4A-210ENST00000552620 Q3C1V9 767 aa8.16□□□□□ -1.1
CHMP4A-210ENST00000552620 GJD4Q96KN9 370 aaPredicted RBP8.16□□□□□ -1.1
CHMP4A-210ENST00000552620 CALR3Q96L12 384 aaKnown RBP8.16□□□□□ -1.1
CHMP4A-210ENST00000552620 MAGI1Q96QZ7 1491 aaPredicted RBP8.16□□□□□ -1.1
CHMP4A-210ENST00000552620 PRKRIP1Q9H875 184 aaPredicted RBP8.16□□□□□ -1.1
CHMP4A-210ENST00000552620 CFDP1Q9UEE9 299 aaPredicted RBP8.16□□□□□ -1.1
CHMP4A-210ENST00000552620 ADGRL2O95490 1459 aa8.15□□□□□ -1.1
CHMP4A-210ENST00000552620 SPATA31E1Q6ZUB1 1445 aa8.15□□□□□ -1.1
CHMP4A-210ENST00000552620 CFAP99D6REC4 459 aa8.15□□□□□ -1.1
CHMP4A-210ENST00000552620 WASHC4Q2M389 1173 aa8.15□□□□□ -1.1
CHMP4A-210ENST00000552620 NBPF8Q3BBV2 869 aa8.15□□□□□ -1.1
CHMP4A-210ENST00000552620 ANKK1Q8NFD2 765 aa8.15□□□□□ -1.1
CHMP4A-210ENST00000552620 ANP32EQ9BTT0 268 aa8.15□□□□□ -1.1
CHMP4A-210ENST00000552620 ZNF608Q9ULD9 1512 aaPredicted RBP8.14□□□□□ -1.11
CHMP4A-210ENST00000552620 TEX14Q8IWB6 1497 aa8.14□□□□□ -1.11
CHMP4A-210ENST00000552620 CARMIL2Q6F5E8 1435 aa8.14□□□□□ -1.11
CHMP4A-210ENST00000552620 ANKRD30AQ9BXX3 1397 aa8.14□□□□□ -1.11
CHMP4A-210ENST00000552620 MORN1Q5T089 497 aa8.14□□□□□ -1.11
CHMP4A-210ENST00000552620 RETREG3Q86VR2 466 aa8.14□□□□□ -1.11
CHMP4A-210ENST00000552620 PRR7Q8TB68 274 aa8.14□□□□□ -1.11
CHMP4A-210ENST00000552620 CHMP7Q8WUX9 453 aaPredicted RBP8.14□□□□□ -1.11
CHMP4A-210ENST00000552620 KIAA1107Q9UPP5 1409 aa8.13□□□□□ -1.11
CHMP4A-210ENST00000552620 ZNF644Q9H582 1327 aaPredicted RBP8.13□□□□□ -1.11
CHMP4A-210ENST00000552620 C11orf95C9JLR9 678 aaPredicted RBP8.13□□□□□ -1.11
CHMP4A-210ENST00000552620 PDIA4P13667 645 aaKnown RBP8.13□□□□□ -1.11
CHMP4A-210ENST00000552620 LRRN4Q8WUT4 740 aa8.13□□□□□ -1.11
CHMP4A-210ENST00000552620 GLMNQ92990 594 aa8.13□□□□□ -1.11
CHMP4A-210ENST00000552620 KCTD12Q96CX2 325 aaKnown RBP8.13□□□□□ -1.11
CHMP4A-210ENST00000552620 HMX1Q9NP08 348 aaPredicted RBP8.13□□□□□ -1.11
CHMP4A-210ENST00000552620 RBM19Q9Y4C8 960 aaKnown RBP8.13□□□□□ -1.11
CHMP4A-210ENST00000552620 GPATCH8Q9UKJ3 1502 aaKnown RBP8.13□□□□□ -1.11
CHMP4A-210ENST00000552620 ITSN2Q9NZM3 1697 aa8.12□□□□□ -1.11
CHMP4A-210ENST00000552620 ZBED9Q6R2W3 1325 aa8.12□□□□□ -1.11
CHMP4A-210ENST00000552620 ADCY10Q96PN6 1610 aa8.12□□□□□ -1.11
CHMP4A-210ENST00000552620 PLEKHD1A6NEE1 506 aa8.12□□□□□ -1.11
CHMP4A-210ENST00000552620 PNMA1Q8ND90 353 aa8.12□□□□□ -1.11
CHMP4A-210ENST00000552620 TRIM34Q9BYJ4 488 aa8.12□□□□□ -1.11
CHMP4A-210ENST00000552620 PPP4R2Q9NY27 417 aa8.12□□□□□ -1.11
CHMP4A-210ENST00000552620 SYNJ2O15056 1496 aa8.12□□□□□ -1.11
CHMP4A-210ENST00000552620 PZPP20742 1482 aa8.12□□□□□ -1.11
CHMP4A-210ENST00000552620 PRG4Q92954 1404 aaPredicted RBP8.12□□□□□ -1.11
CHMP4A-210ENST00000552620 KIF7Q2M1P5 1343 aa8.11□□□□□ -1.11
CHMP4A-210ENST00000552620 POM121CA8CG34 1229 aa8.11□□□□□ -1.11
CHMP4A-210ENST00000552620 PPP4CP60510 307 aa8.11□□□□□ -1.11
CHMP4A-210ENST00000552620 PUS10Q3MIT2 529 aaKnown RBP8.11□□□□□ -1.11
CHMP4A-210ENST00000552620 DESI1Q6ICB0 168 aa8.11□□□□□ -1.11
CHMP4A-210ENST00000552620 SYMPKQ92797 1274 aaKnown RBP8.11□□□□□ -1.11
CHMP4A-210ENST00000552620 MRS2Q9HD23 443 aa8.11□□□□□ -1.11
CHMP4A-210ENST00000552620 HCSTQ9UBK5 93 aa8.11□□□□□ -1.11
CHMP4A-210ENST00000552620 SLC27A5Q9Y2P5 690 aa8.11□□□□□ -1.11
CHMP4A-210ENST00000552620 CAMSAP2Q08AD1 1489 aa8.11□□□□□ -1.11
CHMP4A-210ENST00000552620 ROCK2O75116 1388 aaKnown RBP8.1□□□□□ -1.11
CHMP4A-210ENST00000552620 IRF5Q13568 498 aa8.1□□□□□ -1.11
CHMP4A-210ENST00000552620 ADGBQ8N7X0 1667 aa8.1□□□□□ -1.11
CHMP4A-210ENST00000552620 NUP160Q12769 1436 aa8.1□□□□□ -1.11
CHMP4A-210ENST00000552620 UHRF1BP1Q6BDS2 1440 aa8.1□□□□□ -1.11
CHMP4A-210ENST00000552620 POLR1AO95602 1720 aaPredicted RBP8.09□□□□□ -1.11
CHMP4A-210ENST00000552620 MBD5Q9P267 1494 aa8.09□□□□□ -1.11
CHMP4A-210ENST00000552620 SHANK2Q9UPX8 1470 aa8.09□□□□□ -1.11
CHMP4A-210ENST00000552620 SOWAHBA6NEL2 793 aa8.09□□□□□ -1.11
CHMP4A-210ENST00000552620 TSPY4P0CV99 314 aa8.09□□□□□ -1.11
CHMP4A-210ENST00000552620 TSPY10P0CW01 314 aa8.09□□□□□ -1.11
CHMP4A-210ENST00000552620 TSR3Q9UJK0 312 aaKnown RBP8.09□□□□□ -1.11
CHMP4A-210ENST00000552620 HPS5Q9UPZ3 1129 aa8.09□□□□□ -1.11
CHMP4A-210ENST00000552620 ANKRD50Q9ULJ7 1429 aa8.09□□□□□ -1.11
CHMP4A-210ENST00000552620 EIF4G3O43432 1585 aaKnown RBP8.09□□□□□ -1.11
CHMP4A-210ENST00000552620 CCDC184Q52MB2 194 aa8.08□□□□□ -1.12
CHMP4A-210ENST00000552620 WNT2BQ93097 391 aa8.08□□□□□ -1.12
CHMP4A-210ENST00000552620 SALL2Q9Y467 1007 aaPredicted RBP8.08□□□□□ -1.12
CHMP4A-210ENST00000552620 FANCIQ9NVI1 1328 aa8.07□□□□□ -1.12
CHMP4A-210ENST00000552620 NR1I2O75469 434 aa8.07□□□□□ -1.12
CHMP4A-210ENST00000552620 SOX11P35716 441 aa8.07□□□□□ -1.12
CHMP4A-210ENST00000552620 HDGFL1Q5TGJ6 251 aa8.07□□□□□ -1.12
CHMP4A-210ENST00000552620 FAM9BQ8IZU0 186 aa8.07□□□□□ -1.12
CHMP4A-210ENST00000552620 USB1Q9BQ65 265 aaKnown RBP8.07□□□□□ -1.12
CHMP4A-210ENST00000552620 PODXL2Q9NZ53 605 aa8.07□□□□□ -1.12
CHMP4A-210ENST00000552620 PCDHB3Q9Y5E6 796 aa8.07□□□□□ -1.12
CHMP4A-210ENST00000552620 KTN1Q86UP2 1357 aaKnown RBP8.07□□□□□ -1.12
CHMP4A-210ENST00000552620 PLB1Q6P1J6 1458 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms