RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 LILRB3O75022 631 aa10□□□□□ -0.81
VPS29-210ENST00000552130 LIMD1Q9UGP4 676 aa10□□□□□ -0.81
VPS29-210ENST00000552130 ARID3CA6NKF2 412 aa9.99□□□□□ -0.81
VPS29-210ENST00000552130 APBB1O00213 710 aa9.99□□□□□ -0.81
VPS29-210ENST00000552130 BMP2P12643 396 aa9.99□□□□□ -0.81
VPS29-210ENST00000552130 KRT76Q01546 638 aa9.99□□□□□ -0.81
VPS29-210ENST00000552130 AGERQ15109 404 aa9.99□□□□□ -0.81
VPS29-210ENST00000552130 QPCTQ16769 361 aa9.99□□□□□ -0.81
VPS29-210ENST00000552130 ARMC2Q8NEN0 867 aa9.99□□□□□ -0.81
VPS29-210ENST00000552130 CDK11BP21127 795 aaKnown RBP9.98□□□□□ -0.81
VPS29-210ENST00000552130 MYSM1Q5VVJ2 828 aa9.98□□□□□ -0.81
VPS29-210ENST00000552130 KCTD17Q8N5Z5 321 aa9.98□□□□□ -0.81
VPS29-210ENST00000552130 CDK11AQ9UQ88 783 aaPredicted RBP9.98□□□□□ -0.81
VPS29-210ENST00000552130 UPP2O95045 317 aa9.97□□□□□ -0.81
VPS29-210ENST00000552130 FSHRP23945 695 aa9.96□□□□□ -0.82
VPS29-210ENST00000552130 GPR161Q8N6U8 529 aaKnown RBP9.96□□□□□ -0.82
VPS29-210ENST00000552130 TSEN34Q9BSV6 310 aaKnown RBP9.96□□□□□ -0.82
VPS29-210ENST00000552130 CSPP1Q1MSJ5 1256 aa9.95□□□□□ -0.82
VPS29-210ENST00000552130 NBPF14Q5TI25 921 aa9.95□□□□□ -0.82
VPS29-210ENST00000552130 AK7Q96M32 723 aa9.95□□□□□ -0.82
VPS29-210ENST00000552130 EMILIN1Q9Y6C2 1016 aa9.95□□□□□ -0.82
VPS29-210ENST00000552130 RAD21O60216 631 aa9.94□□□□□ -0.82
VPS29-210ENST00000552130 VASH1Q7L8A9 365 aaPredicted RBP9.94□□□□□ -0.82
VPS29-210ENST00000552130 CCDC116Q8IYX3 515 aa9.94□□□□□ -0.82
VPS29-210ENST00000552130 HSP90B1P14625 803 aaKnown RBP9.93□□□□□ -0.82
VPS29-210ENST00000552130 SUZ12Q15022 739 aaKnown RBP9.93□□□□□ -0.82
VPS29-210ENST00000552130 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.93□□□□□ -0.82
VPS29-210ENST00000552130 Q6ZVU0 165 aa9.93□□□□□ -0.82
VPS29-210ENST00000552130 NANOS1Q8WY41 292 aaKnown RBP9.93□□□□□ -0.82
VPS29-210ENST00000552130 GPKOWQ92917 476 aaPredicted RBP eCLIP9.93□□□□□ -0.82
VPS29-210ENST00000552130 RTL5Q5HYW3 569 aaPredicted RBP9.92□□□□□ -0.82
VPS29-210ENST00000552130 TTLL8A6PVC2 850 aa9.91□□□□□ -0.82
VPS29-210ENST00000552130 PTSQ03393 145 aa9.91□□□□□ -0.82
VPS29-210ENST00000552130 ERFEQ4G0M1 354 aa9.91□□□□□ -0.82
VPS29-210ENST00000552130 NUTM2BA6NNL0 878 aaPredicted RBP9.9□□□□□ -0.82
VPS29-210ENST00000552130 NUTM2EB1AL46 878 aaPredicted RBP9.9□□□□□ -0.82
VPS29-210ENST00000552130 NUTM2DQ5VT03 806 aaPredicted RBP9.9□□□□□ -0.82
VPS29-210ENST00000552130 NUTM2AQ8IVF1 878 aaPredicted RBP9.9□□□□□ -0.82
VPS29-210ENST00000552130 TSC1Q92574 1164 aa9.9□□□□□ -0.82
VPS29-210ENST00000552130 SPINT1O43278 529 aa9.89□□□□□ -0.83
VPS29-210ENST00000552130 HELBQ8NG08 1087 aaPredicted RBP9.89□□□□□ -0.83
VPS29-210ENST00000552130 MAGEB6P1A0A0J9YX57 407 aa9.88□□□□□ -0.83
VPS29-210ENST00000552130 PDE4DQ08499 809 aa9.88□□□□□ -0.83
VPS29-210ENST00000552130 PPP1R26Q5T8A7 1209 aaPredicted RBP9.88□□□□□ -0.83
VPS29-210ENST00000552130 RGS22Q8NE09 1264 aa9.88□□□□□ -0.83
VPS29-210ENST00000552130 CNTNAP3BQ96NU0 1288 aa9.88□□□□□ -0.83
VPS29-210ENST00000552130 CNTNAP3Q9BZ76 1288 aa9.88□□□□□ -0.83
VPS29-210ENST00000552130 SLC35F4A4IF30 521 aa9.87□□□□□ -0.83
VPS29-210ENST00000552130 CBLBQ13191 982 aa9.87□□□□□ -0.83
VPS29-210ENST00000552130 IL27Q8NEV9 243 aa9.87□□□□□ -0.83
VPS29-210ENST00000552130 ADAMTS8Q9UP79 889 aa9.87□□□□□ -0.83
VPS29-210ENST00000552130 RASSF7Q02833 373 aa9.86□□□□□ -0.83
VPS29-210ENST00000552130 CCDC155Q8N6L0 562 aa9.86□□□□□ -0.83
VPS29-210ENST00000552130 COL25A1Q9BXS0 654 aaPredicted RBP9.86□□□□□ -0.83
VPS29-210ENST00000552130 CLK2P49760 499 aaKnown RBP9.85□□□□□ -0.83
VPS29-210ENST00000552130 RNFT1Q5M7Z0 435 aa9.85□□□□□ -0.83
VPS29-210ENST00000552130 ZNF385CQ66K41 422 aaPredicted RBP9.85□□□□□ -0.83
VPS29-210ENST00000552130 PDXDC2PQ6P474 469 aa9.85□□□□□ -0.83
VPS29-210ENST00000552130 TMEM151AQ8N4L1 468 aa9.85□□□□□ -0.83
VPS29-210ENST00000552130 PGPEP1Q9NXJ5 209 aa9.85□□□□□ -0.83
VPS29-210ENST00000552130 FIGNL2A6NMB9 653 aa9.84□□□□□ -0.83
VPS29-210ENST00000552130 SLURP2P0DP57 97 aa9.84□□□□□ -0.83
VPS29-210ENST00000552130 CCDC82Q8N4S0 544 aa9.84□□□□□ -0.83
VPS29-210ENST00000552130 TRAIPQ9BWF2 469 aa9.84□□□□□ -0.83
VPS29-210ENST00000552130 CARD14Q9BXL6 1004 aa9.84□□□□□ -0.83
VPS29-210ENST00000552130 GPBP1L1Q9HC44 474 aaPredicted RBP9.84□□□□□ -0.83
VPS29-210ENST00000552130 GDF11O95390 407 aa9.83□□□□□ -0.84
VPS29-210ENST00000552130 PUS7Q96PZ0 661 aaKnown RBP9.83□□□□□ -0.84
VPS29-210ENST00000552130 CDV3Q9UKY7 258 aaKnown RBP9.83□□□□□ -0.84
VPS29-210ENST00000552130 MTMR7Q9Y216 660 aa9.83□□□□□ -0.84
VPS29-210ENST00000552130 ARHGEF15O94989 841 aa9.82□□□□□ -0.84
VPS29-210ENST00000552130 CTDSPL2Q05D32 466 aa9.82□□□□□ -0.84
VPS29-210ENST00000552130 KCTD15Q96SI1 283 aaPredicted RBP9.82□□□□□ -0.84
VPS29-210ENST00000552130 RNF225M0QZC1 329 aaPredicted RBP9.81□□□□□ -0.84
VPS29-210ENST00000552130 OCSTAMPQ9BR26 566 aa9.81□□□□□ -0.84
VPS29-210ENST00000552130 ITGA6P23229 1130 aa9.8□□□□□ -0.84
VPS29-210ENST00000552130 DHX9Q08211 1270 aaKnown RBP9.8□□□□□ -0.84
VPS29-210ENST00000552130 TMCO4Q5TGY1 634 aa9.8□□□□□ -0.84
VPS29-210ENST00000552130 FKBPLQ9UIM3 349 aa9.8□□□□□ -0.84
VPS29-210ENST00000552130 CTSOP43234 321 aaPredicted RBP9.79□□□□□ -0.84
VPS29-210ENST00000552130 RBM25P49756 843 aaKnown RBP9.79□□□□□ -0.84
VPS29-210ENST00000552130 INTS6LQ5JSJ4 861 aaKnown RBP9.79□□□□□ -0.84
VPS29-210ENST00000552130 WHAMMQ8TF30 809 aa9.79□□□□□ -0.84
VPS29-210ENST00000552130 ARHGAP9Q9BRR9 750 aa9.79□□□□□ -0.84
VPS29-210ENST00000552130 ZC3H4Q9UPT8 1303 aaKnown RBP9.79□□□□□ -0.84
VPS29-210ENST00000552130 FBXO31Q5XUX0 539 aaPredicted RBP9.78□□□□□ -0.84
VPS29-210ENST00000552130 AEBP1Q8IUX7 1158 aa9.78□□□□□ -0.84
VPS29-210ENST00000552130 SENP3-EIF4A1A0A087X0R7 540 aa9.77□□□□□ -0.85
VPS29-210ENST00000552130 LRRN4Q8WUT4 740 aa9.77□□□□□ -0.85
VPS29-210ENST00000552130 SLC10A4Q96EP9 437 aa9.77□□□□□ -0.85
VPS29-210ENST00000552130 AGBL1Q96MI9 1066 aa9.77□□□□□ -0.85
VPS29-210ENST00000552130 POLR3EQ9NVU0 708 aa9.77□□□□□ -0.85
VPS29-210ENST00000552130 FLIIQ13045 1269 aa9.76□□□□□ -0.85
VPS29-210ENST00000552130 VWA5B2Q8N398 1253 aa9.76□□□□□ -0.85
VPS29-210ENST00000552130 RNF217Q8TC41 542 aa9.76□□□□□ -0.85
VPS29-210ENST00000552130 KDM4CQ9H3R0 1056 aa9.76□□□□□ -0.85
VPS29-210ENST00000552130 SV2AQ7L0J3 742 aa9.75□□□□□ -0.85
VPS29-210ENST00000552130 SVOPQ8N4V2 548 aa9.75□□□□□ -0.85
VPS29-210ENST00000552130 INSM2Q96T92 566 aaPredicted RBP9.75□□□□□ -0.85
VPS29-210ENST00000552130 CHMP4AQ9BY43 222 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms