RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 VPS72Q15906 364 aa22.16■■□□□ 1.14
CHMP1A-209ENST00000550872 AXIN2Q9Y2T1 843 aa22.16■■□□□ 1.14
CHMP1A-209ENST00000550872 CAMTA1Q9Y6Y1 1673 aa22.16■■□□□ 1.14
CHMP1A-209ENST00000550872 MAP3K19Q56UN5 1328 aa22.15■■□□□ 1.14
CHMP1A-209ENST00000550872 ZNF316A6NFI3 1004 aaPredicted RBP22.15■■□□□ 1.14
CHMP1A-209ENST00000550872 TNNT2P45379 298 aaPredicted RBP22.15■■□□□ 1.14
CHMP1A-209ENST00000550872 AMPHP49418 695 aa22.15■■□□□ 1.14
CHMP1A-209ENST00000550872 DDX10Q13206 875 aaKnown RBP22.15■■□□□ 1.14
CHMP1A-209ENST00000550872 CNGB1Q14028 1251 aaPredicted RBP22.15■■□□□ 1.14
CHMP1A-209ENST00000550872 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.14■■□□□ 1.14
CHMP1A-209ENST00000550872 CC2D1BQ5T0F9 858 aaKnown RBP22.14■■□□□ 1.13
CHMP1A-209ENST00000550872 GJD4Q96KN9 370 aaPredicted RBP22.14■■□□□ 1.13
CHMP1A-209ENST00000550872 LMO7Q8WWI1 1683 aa22.14■■□□□ 1.13
CHMP1A-209ENST00000550872 COL18A1P39060 1754 aa22.13■■□□□ 1.13
CHMP1A-209ENST00000550872 IP6K1Q92551 441 aa22.13■■□□□ 1.13
CHMP1A-209ENST00000550872 LTN1O94822 1766 aa22.12■■□□□ 1.13
CHMP1A-209ENST00000550872 NRAPQ86VF7 1730 aa22.12■■□□□ 1.13
CHMP1A-209ENST00000550872 ANKRD26Q9UPS8 1709 aa22.11■■□□□ 1.13
CHMP1A-209ENST00000550872 CSB-PGBD3P0DP91 1061 aa22.11■■□□□ 1.13
CHMP1A-209ENST00000550872 LARP1Q6PKG0 1096 aaKnown RBP22.11■■□□□ 1.13
CHMP1A-209ENST00000550872 COL5A2P05997 1499 aaPredicted RBP22.1■■□□□ 1.13
CHMP1A-209ENST00000550872 EMILIN1Q9Y6C2 1016 aa22.1■■□□□ 1.13
CHMP1A-209ENST00000550872 NPC1L1Q9UHC9 1359 aa22.1■■□□□ 1.13
CHMP1A-209ENST00000550872 SPATA31A5Q5VU36 1347 aa22.09■■□□□ 1.13
CHMP1A-209ENST00000550872 SPATA31A7Q8IWB4 1347 aa22.09■■□□□ 1.13
CHMP1A-209ENST00000550872 RGS12O14924 1447 aa22.09■■□□□ 1.13
CHMP1A-209ENST00000550872 PPM1GO15355 546 aaPredicted RBP22.09■■□□□ 1.13
CHMP1A-209ENST00000550872 HOXC9P31274 260 aa22.09■■□□□ 1.13
CHMP1A-209ENST00000550872 RGPD5Q99666 1765 aa22.09■■□□□ 1.13
CHMP1A-209ENST00000550872 ABCC6O95255 1503 aa22.08■■□□□ 1.13
CHMP1A-209ENST00000550872 TOM1L2Q6ZVM7 507 aa22.08■■□□□ 1.13
CHMP1A-209ENST00000550872 POLKQ9UBT6 870 aa22.08■■□□□ 1.13
CHMP1A-209ENST00000550872 ANKRD24Q8TF21 1146 aa22.07■■□□□ 1.12
CHMP1A-209ENST00000550872 LTV1Q96GA3 475 aaPredicted RBP22.07■■□□□ 1.12
CHMP1A-209ENST00000550872 USP35Q9P2H5 1018 aa22.07■■□□□ 1.12
CHMP1A-209ENST00000550872 WDR17Q8IZU2 1322 aa22.06■■□□□ 1.12
CHMP1A-209ENST00000550872 MAP2P11137 1827 aaKnown RBP22.06■■□□□ 1.12
CHMP1A-209ENST00000550872 RTL1A6NKG5 1358 aa22.06■■□□□ 1.12
CHMP1A-209ENST00000550872 BLMP54132 1417 aaPredicted RBP22.06■■□□□ 1.12
CHMP1A-209ENST00000550872 SPATA31A1Q5TZJ5 1347 aa22.06■■□□□ 1.12
CHMP1A-209ENST00000550872 KIF24Q5T7B8 1368 aa22.05■■□□□ 1.12
CHMP1A-209ENST00000550872 ERBB3P21860 1342 aa22.05■■□□□ 1.12
CHMP1A-209ENST00000550872 GLI3P10071 1580 aa22.04■■□□□ 1.12
CHMP1A-209ENST00000550872 FLT4P35916 1363 aa22.04■■□□□ 1.12
CHMP1A-209ENST00000550872 HSP90AB2PQ58FF8 381 aa22.04■■□□□ 1.12
CHMP1A-209ENST00000550872 CRB1P82279 1406 aa22.04■■□□□ 1.12
CHMP1A-209ENST00000550872 FAM98CQ17RN3 349 aaKnown RBP22.03■■□□□ 1.12
CHMP1A-209ENST00000550872 TCP11L2Q8N4U5 519 aa22.03■■□□□ 1.12
CHMP1A-209ENST00000550872 NLRP2Q9NX02 1062 aa22.03■■□□□ 1.12
CHMP1A-209ENST00000550872 INSRP06213 1382 aa22.01■■□□□ 1.11
CHMP1A-209ENST00000550872 A0A0G2JS52 829 aa22.01■■□□□ 1.11
CHMP1A-209ENST00000550872 MYT1Q01538 1121 aa22.01■■□□□ 1.11
CHMP1A-209ENST00000550872 CARD10Q9BWT7 1032 aa22.01■■□□□ 1.11
CHMP1A-209ENST00000550872 PEAK1Q9H792 1746 aa22■■□□□ 1.11
CHMP1A-209ENST00000550872 ONECUT3O60422 494 aaPredicted RBP22■■□□□ 1.11
CHMP1A-209ENST00000550872 SEPT12Q8IYM1 358 aa22■■□□□ 1.11
CHMP1A-209ENST00000550872 THRAP3Q9Y2W1 955 aaKnown RBP22■■□□□ 1.11
CHMP1A-209ENST00000550872 BARGINQ6ZT62 677 aa21.98■■□□□ 1.11
CHMP1A-209ENST00000550872 SMG6Q86US8 1419 aaKnown RBP21.97■■□□□ 1.11
CHMP1A-209ENST00000550872 MTHFSP49914 203 aa21.97■■□□□ 1.11
CHMP1A-209ENST00000550872 NBPF6Q5VWK0 638 aa21.94■■□□□ 1.1
CHMP1A-209ENST00000550872 NBPF4Q96M43 638 aa21.94■■□□□ 1.1
CHMP1A-209ENST00000550872 EIF4A2Q14240 407 aaKnown RBP21.93■■□□□ 1.1
CHMP1A-209ENST00000550872 PPP2R1AP30153 589 aa21.92■■□□□ 1.1
CHMP1A-209ENST00000550872 SRCAPQ6ZRS2 3230 aa21.91■■□□□ 1.1
CHMP1A-209ENST00000550872 USHBP1Q8N6Y0 703 aa21.91■■□□□ 1.1
CHMP1A-209ENST00000550872 CDCA7Q9BWT1 371 aaPredicted RBP21.91■■□□□ 1.1
CHMP1A-209ENST00000550872 EP400Q96L91 3159 aa21.91■■□□□ 1.1
CHMP1A-209ENST00000550872 FAM208AQ9UK61 1670 aaKnown RBP21.91■■□□□ 1.1
CHMP1A-209ENST00000550872 PARD3Q8TEW0 1356 aa21.9■■□□□ 1.1
CHMP1A-209ENST00000550872 RALBP1Q15311 655 aa21.9■■□□□ 1.1
CHMP1A-209ENST00000550872 RGPD2P0DJD1 1756 aa21.89■■□□□ 1.1
CHMP1A-209ENST00000550872 IL2RBP14784 551 aa21.89■■□□□ 1.09
CHMP1A-209ENST00000550872 KRT27Q7Z3Y8 459 aa21.89■■□□□ 1.09
CHMP1A-209ENST00000550872 CCDC125Q86Z20 511 aa21.89■■□□□ 1.09
CHMP1A-209ENST00000550872 EYA1Q99502 592 aa21.89■■□□□ 1.09
CHMP1A-209ENST00000550872 THSD7AQ9UPZ6 1657 aa21.88■■□□□ 1.09
CHMP1A-209ENST00000550872 PDE3BQ13370 1112 aa21.88■■□□□ 1.09
CHMP1A-209ENST00000550872 DDB1Q16531 1140 aa21.87■■□□□ 1.09
CHMP1A-209ENST00000550872 BRWD3Q6RI45 1802 aa21.87■■□□□ 1.09
CHMP1A-209ENST00000550872 EXOC5O00471 708 aa21.86■■□□□ 1.09
CHMP1A-209ENST00000550872 CFAP53Q96M91 514 aa21.86■■□□□ 1.09
CHMP1A-209ENST00000550872 DISP2A7MBM2 1401 aa21.86■■□□□ 1.09
CHMP1A-209ENST00000550872 DIAPH1O60610 1272 aaKnown RBP21.85■■□□□ 1.09
CHMP1A-209ENST00000550872 IL13P35225 146 aa21.85■■□□□ 1.09
CHMP1A-209ENST00000550872 RAPGEF4Q8WZA2 1011 aa21.84■■□□□ 1.09
CHMP1A-209ENST00000550872 WNK3Q9BYP7 1800 aa21.83■■□□□ 1.08
CHMP1A-209ENST00000550872 TATP17735 454 aaPredicted RBP21.82■■□□□ 1.08
CHMP1A-209ENST00000550872 FAM182BQ5T319 152 aa21.82■■□□□ 1.08
CHMP1A-209ENST00000550872 PRKRIP1Q9H875 184 aaPredicted RBP21.82■■□□□ 1.08
CHMP1A-209ENST00000550872 PARP4Q9UKK3 1724 aaKnown RBP21.82■■□□□ 1.08
CHMP1A-209ENST00000550872 IGSF1Q8N6C5 1336 aa21.81■■□□□ 1.08
CHMP1A-209ENST00000550872 MYBBP1AQ9BQG0 1328 aaKnown RBP21.8■■□□□ 1.08
CHMP1A-209ENST00000550872 NCAPD2Q15021 1401 aa21.79■■□□□ 1.08
CHMP1A-209ENST00000550872 LRRC37A3O60309 1634 aa21.78■■□□□ 1.08
CHMP1A-209ENST00000550872 U2SURPO15042 1029 aaKnown RBP21.78■■□□□ 1.08
CHMP1A-209ENST00000550872 SULT6B1Q6IMI4 303 aa21.78■■□□□ 1.08
CHMP1A-209ENST00000550872 ZCRB1Q8TBF4 217 aaKnown RBP21.78■■□□□ 1.08
CHMP1A-209ENST00000550872 NUDCQ9Y266 331 aa21.78■■□□□ 1.08
CHMP1A-209ENST00000550872 MEGF6O75095 1541 aa21.78■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms