RNA–Protein interactions for RNA: ENST00000549139.5

CHMP1A-206, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 812 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-206ENST00000549139 DCAF8L1A6NGE4 600 aa22.38■■□□□ 1.17
CHMP1A-206ENST00000549139 BRD4O60885 1362 aaPredicted RBP22.38■■□□□ 1.17
CHMP1A-206ENST00000549139 CCER1Q8TC90 406 aaPredicted RBP22.37■■□□□ 1.17
CHMP1A-206ENST00000549139 BCL11BQ9C0K0 894 aaPredicted RBP22.37■■□□□ 1.17
CHMP1A-206ENST00000549139 COL18A1P39060 1754 aa22.37■■□□□ 1.17
CHMP1A-206ENST00000549139 ROCK2O75116 1388 aaKnown RBP22.37■■□□□ 1.17
CHMP1A-206ENST00000549139 SLIT3O75094 1523 aa22.36■■□□□ 1.17
CHMP1A-206ENST00000549139 DDB1Q16531 1140 aa22.36■■□□□ 1.17
CHMP1A-206ENST00000549139 BCL9O00512 1426 aa22.36■■□□□ 1.17
CHMP1A-206ENST00000549139 PTGER2P43116 358 aa22.34■■□□□ 1.17
CHMP1A-206ENST00000549139 MARCH10Q8NA82 808 aaPredicted RBP22.34■■□□□ 1.17
CHMP1A-206ENST00000549139 CABP2Q9NPB3 220 aa22.34■■□□□ 1.17
CHMP1A-206ENST00000549139 WNK3Q9BYP7 1800 aa22.34■■□□□ 1.17
CHMP1A-206ENST00000549139 USP6P35125 1406 aa22.33■■□□□ 1.17
CHMP1A-206ENST00000549139 SRPK2P78362 688 aaKnown RBP22.33■■□□□ 1.17
CHMP1A-206ENST00000549139 NLRP6P59044 892 aa22.32■■□□□ 1.16
CHMP1A-206ENST00000549139 TOM1L2Q6ZVM7 507 aa22.32■■□□□ 1.16
CHMP1A-206ENST00000549139 AXIN2Q9Y2T1 843 aa22.32■■□□□ 1.16
CHMP1A-206ENST00000549139 MYOM1P52179 1685 aa22.32■■□□□ 1.16
CHMP1A-206ENST00000549139 ZBTB7AO95365 584 aa22.31■■□□□ 1.16
CHMP1A-206ENST00000549139 WDR17Q8IZU2 1322 aa22.31■■□□□ 1.16
CHMP1A-206ENST00000549139 CENPJQ9HC77 1338 aaPredicted RBP22.31■■□□□ 1.16
CHMP1A-206ENST00000549139 ZBTB7CA1YPR0 619 aa22.3■■□□□ 1.16
CHMP1A-206ENST00000549139 QRICH2Q9H0J4 1663 aa22.3■■□□□ 1.16
CHMP1A-206ENST00000549139 CABP1Q9NZU7 370 aa22.29■■□□□ 1.16
CHMP1A-206ENST00000549139 PIK3C2AO00443 1686 aa22.29■■□□□ 1.16
CHMP1A-206ENST00000549139 AKAP12Q02952 1782 aa22.28■■□□□ 1.16
CHMP1A-206ENST00000549139 ZNF784Q8NCA9 323 aaPredicted RBP22.28■■□□□ 1.16
CHMP1A-206ENST00000549139 CDCA7Q9BWT1 371 aaPredicted RBP22.28■■□□□ 1.16
CHMP1A-206ENST00000549139 CARD11Q9BXL7 1154 aa22.28■■□□□ 1.16
CHMP1A-206ENST00000549139 TXNRD1Q16881 649 aa22.27■■□□□ 1.16
CHMP1A-206ENST00000549139 CPSF1Q10570 1443 aaKnown RBP22.26■■□□□ 1.15
CHMP1A-206ENST00000549139 ATF5Q9Y2D1 282 aaPredicted RBP22.26■■□□□ 1.15
CHMP1A-206ENST00000549139 ARHGEF25Q86VW2 580 aa22.25■■□□□ 1.15
CHMP1A-206ENST00000549139 SGIP1Q9BQI5 828 aa22.25■■□□□ 1.15
CHMP1A-206ENST00000549139 SYT17Q9BSW7 474 aa22.25■■□□□ 1.15
CHMP1A-206ENST00000549139 RGPD5Q99666 1765 aa22.25■■□□□ 1.15
CHMP1A-206ENST00000549139 SLC15A2Q16348 729 aa22.24■■□□□ 1.15
CHMP1A-206ENST00000549139 CARD10Q9BWT7 1032 aa22.24■■□□□ 1.15
CHMP1A-206ENST00000549139 FHDC1Q9C0D6 1143 aaPredicted RBP22.23■■□□□ 1.15
CHMP1A-206ENST00000549139 STK32BQ9NY57 414 aa22.23■■□□□ 1.15
CHMP1A-206ENST00000549139 CHD4Q14839 1912 aa22.22■■□□□ 1.15
CHMP1A-206ENST00000549139 MTFR1LQ9H019 292 aa22.21■■□□□ 1.15
CHMP1A-206ENST00000549139 EXOC5O00471 708 aa22.19■■□□□ 1.14
CHMP1A-206ENST00000549139 TTC21BQ7Z4L5 1316 aa22.19■■□□□ 1.14
CHMP1A-206ENST00000549139 KCNH5Q8NCM2 988 aa22.18■■□□□ 1.14
CHMP1A-206ENST00000549139 NFAT5O94916 1531 aa22.17■■□□□ 1.14
CHMP1A-206ENST00000549139 TNS2Q63HR2 1409 aa22.17■■□□□ 1.14
CHMP1A-206ENST00000549139 EVC2Q86UK5 1308 aa22.17■■□□□ 1.14
CHMP1A-206ENST00000549139 SBNO2Q9Y2G9 1366 aa22.16■■□□□ 1.14
CHMP1A-206ENST00000549139 CSB-PGBD3P0DP91 1061 aa22.16■■□□□ 1.14
CHMP1A-206ENST00000549139 NHSQ6T4R5 1651 aa22.16■■□□□ 1.14
CHMP1A-206ENST00000549139 PAPPAQ13219 1627 aa22.16■■□□□ 1.14
CHMP1A-206ENST00000549139 CCDC7Q96M83 1385 aa22.15■■□□□ 1.14
CHMP1A-206ENST00000549139 ZNF692Q9BU19 519 aaPredicted RBP22.15■■□□□ 1.14
CHMP1A-206ENST00000549139 MAP3K5Q99683 1374 aa22.14■■□□□ 1.14
CHMP1A-206ENST00000549139 ABCC6O95255 1503 aa22.14■■□□□ 1.13
CHMP1A-206ENST00000549139 GOLGB1Q14789 3259 aaKnown RBP22.14■■□□□ 1.13
CHMP1A-206ENST00000549139 ARXQ96QS3 562 aa22.13■■□□□ 1.13
CHMP1A-206ENST00000549139 TTC21AQ8NDW8 1320 aa22.12■■□□□ 1.13
CHMP1A-206ENST00000549139 SOX12O15370 315 aa22.12■■□□□ 1.13
CHMP1A-206ENST00000549139 SLC24A1O60721 1099 aa22.1■■□□□ 1.13
CHMP1A-206ENST00000549139 C1QTNF8P60827 252 aa22.1■■□□□ 1.13
CHMP1A-206ENST00000549139 ACSBG1Q96GR2 724 aa22.1■■□□□ 1.13
CHMP1A-206ENST00000549139 KAT6BQ8WYB5 2073 aa22.1■■□□□ 1.13
CHMP1A-206ENST00000549139 ST20-MTHFSA0A0A6YYL1 179 aa22.09■■□□□ 1.13
CHMP1A-206ENST00000549139 BTAF1O14981 1849 aa22.08■■□□□ 1.13
CHMP1A-206ENST00000549139 SENP3-EIF4A1A0A087X0R7 540 aa22.08■■□□□ 1.13
CHMP1A-206ENST00000549139 ZNF827Q17R98 1081 aa22.08■■□□□ 1.13
CHMP1A-206ENST00000549139 LRRC4BQ9NT99 713 aa22.07■■□□□ 1.12
CHMP1A-206ENST00000549139 ERBB3P21860 1342 aa22.06■■□□□ 1.12
CHMP1A-206ENST00000549139 TESK2Q96S53 571 aa22.06■■□□□ 1.12
CHMP1A-206ENST00000549139 USP47Q96K76 1375 aa22.06■■□□□ 1.12
CHMP1A-206ENST00000549139 USP31Q70CQ4 1352 aa22.05■■□□□ 1.12
CHMP1A-206ENST00000549139 PUS7Q96PZ0 661 aaKnown RBP22.05■■□□□ 1.12
CHMP1A-206ENST00000549139 USP54Q70EL1 1684 aa22.04■■□□□ 1.12
CHMP1A-206ENST00000549139 KTN1Q86UP2 1357 aaKnown RBP22.04■■□□□ 1.12
CHMP1A-206ENST00000549139 COL24A1Q17RW2 1714 aa22.04■■□□□ 1.12
CHMP1A-206ENST00000549139 MON2Q7Z3U7 1717 aa22.04■■□□□ 1.12
CHMP1A-206ENST00000549139 IL2RBP14784 551 aa22.03■■□□□ 1.12
CHMP1A-206ENST00000549139 AKT1S1Q96B36 256 aa22.03■■□□□ 1.12
CHMP1A-206ENST00000549139 CEP350Q5VT06 3117 aa22.03■■□□□ 1.12
CHMP1A-206ENST00000549139 NLRP2Q9NX02 1062 aa22.02■■□□□ 1.12
CHMP1A-206ENST00000549139 QSER1Q2KHR3 1735 aa22.01■■□□□ 1.11
CHMP1A-206ENST00000549139 LTN1O94822 1766 aa22■■□□□ 1.11
CHMP1A-206ENST00000549139 GPR162Q16538 588 aa21.99■■□□□ 1.11
CHMP1A-206ENST00000549139 SLC16A10Q8TF71 515 aa21.99■■□□□ 1.11
CHMP1A-206ENST00000549139 CD163L1Q9NR16 1453 aa21.98■■□□□ 1.11
CHMP1A-206ENST00000549139 TMF1P82094 1093 aa21.97■■□□□ 1.11
CHMP1A-206ENST00000549139 NME9Q86XW9 330 aa21.97■■□□□ 1.11
CHMP1A-206ENST00000549139 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.97■■□□□ 1.11
CHMP1A-206ENST00000549139 ANKRD24Q8TF21 1146 aa21.97■■□□□ 1.11
CHMP1A-206ENST00000549139 PNPLA7Q6ZV29 1317 aa21.97■■□□□ 1.11
CHMP1A-206ENST00000549139 SLC27A3Q5K4L6 730 aa21.96■■□□□ 1.11
CHMP1A-206ENST00000549139 TUBGCP6Q96RT7 1819 aa21.96■■□□□ 1.11
CHMP1A-206ENST00000549139 EIF4G2P78344 907 aaKnown RBP eCLIP21.94■■□□□ 1.1
CHMP1A-206ENST00000549139 POLD1P28340 1107 aa21.93■■□□□ 1.1
CHMP1A-206ENST00000549139 SHANK3Q9BYB0 1731 aa21.93■■□□□ 1.1
CHMP1A-206ENST00000549139 GIGYF1O75420 1035 aaPredicted RBP21.92■■□□□ 1.1
CHMP1A-206ENST00000549139 CDCA8Q53HL2 280 aa21.92■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms