RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	SOS2	Q07890	1332 aa	Predicted RBP	11.16	□□□□□ -0.62
SNHG1-223	ENST00000545440	TRPM3	Q9HCF6	1732 aa	Predicted RBP	11.16	□□□□□ -0.62
SNHG1-223	ENST00000545440	FOXK1	P85037	733 aa		11.16	□□□□□ -0.62
SNHG1-223	ENST00000545440	CAMK2B	Q13554	666 aa		11.16	□□□□□ -0.62
SNHG1-223	ENST00000545440	LRRC59	Q96AG4	307 aa	Known RBP	11.16	□□□□□ -0.62
SNHG1-223	ENST00000545440	RGS17	Q9UGC6	210 aa	Predicted RBP	11.16	□□□□□ -0.62
SNHG1-223	ENST00000545440	METRN	Q9UJH8	293 aa		11.16	□□□□□ -0.62
SNHG1-223	ENST00000545440	ARIH1	Q9Y4X5	557 aa	Predicted RBP	11.16	□□□□□ -0.62
SNHG1-223	ENST00000545440	QRICH2	Q9H0J4	1663 aa		11.16	□□□□□ -0.62
SNHG1-223	ENST00000545440	ANKAR	Q7Z5J8	1434 aa		11.16	□□□□□ -0.62
SNHG1-223	ENST00000545440	TULP4	Q9NRJ4	1543 aa		11.15	□□□□□ -0.62
SNHG1-223	ENST00000545440	ORAI2	Q96SN7	254 aa		11.15	□□□□□ -0.62
SNHG1-223	ENST00000545440	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	11.15	□□□□□ -0.63
SNHG1-223	ENST00000545440	NPHP3	Q7Z494	1330 aa		11.14	□□□□□ -0.63
SNHG1-223	ENST00000545440	DSG2	Q14126	1118 aa		11.14	□□□□□ -0.63
SNHG1-223	ENST00000545440	LMOD2	Q6P5Q4	547 aa		11.14	□□□□□ -0.63
SNHG1-223	ENST00000545440	EIF3A	Q14152	1382 aa	Known RBP	11.14	□□□□□ -0.63
SNHG1-223	ENST00000545440	ALS2	Q96Q42	1657 aa		11.14	□□□□□ -0.63
SNHG1-223	ENST00000545440	CRYBG1	Q9Y4K1	1723 aa		11.13	□□□□□ -0.63
SNHG1-223	ENST00000545440	DDX17	Q92841	729 aa	Known RBP	11.13	□□□□□ -0.63
SNHG1-223	ENST00000545440	PRAM1	Q96QH2	718 aa		11.13	□□□□□ -0.63
SNHG1-223	ENST00000545440	SPDYE16	A6NNV3	312 aa	Predicted RBP	11.12	□□□□□ -0.63
SNHG1-223	ENST00000545440	ESCO1	Q5FWF5	840 aa		11.12	□□□□□ -0.63
SNHG1-223	ENST00000545440	MEX3C	Q5U5Q3	659 aa	Known RBP	11.12	□□□□□ -0.63
SNHG1-223	ENST00000545440	PLPP6	Q8IY26	295 aa		11.12	□□□□□ -0.63
SNHG1-223	ENST00000545440	C2orf72	A6NCS6	295 aa		11.11	□□□□□ -0.63
SNHG1-223	ENST00000545440	ZNF316	A6NFI3	1004 aa	Predicted RBP	11.11	□□□□□ -0.63
SNHG1-223	ENST00000545440	SEMA3E	O15041	775 aa		11.11	□□□□□ -0.63
SNHG1-223	ENST00000545440	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	11.11	□□□□□ -0.63
SNHG1-223	ENST00000545440	PELP1	Q8IZL8	1130 aa	Known RBP	11.11	□□□□□ -0.63
SNHG1-223	ENST00000545440	NWD2	Q9ULI1	1742 aa		11.11	□□□□□ -0.63
SNHG1-223	ENST00000545440	PLCH1	Q4KWH8	1693 aa		11.11	□□□□□ -0.63
SNHG1-223	ENST00000545440	MAP3K9	P80192	1104 aa		11.1	□□□□□ -0.63
SNHG1-223	ENST00000545440	POGK	Q9P215	609 aa		11.1	□□□□□ -0.63
SNHG1-223	ENST00000545440	COLQ	Q9Y215	455 aa	Predicted RBP	11.1	□□□□□ -0.63
SNHG1-223	ENST00000545440	ATP7B	P35670	1465 aa		11.1	□□□□□ -0.63
SNHG1-223	ENST00000545440	CDK12	Q9NYV4	1490 aa	Predicted RBP	11.09	□□□□□ -0.63
SNHG1-223	ENST00000545440	NUTM2F	A1L443	756 aa		11.09	□□□□□ -0.63
SNHG1-223	ENST00000545440	TESPA1	A2RU30	521 aa	Predicted RBP	11.09	□□□□□ -0.63
SNHG1-223	ENST00000545440	ZNF772	Q68DY9	489 aa	Predicted RBP	11.09	□□□□□ -0.63
SNHG1-223	ENST00000545440	POTEA	Q6S8J7	498 aa		11.09	□□□□□ -0.63
SNHG1-223	ENST00000545440	TRAK1	Q9UPV9	953 aa		11.09	□□□□□ -0.63
SNHG1-223	ENST00000545440	TNS3	Q68CZ2	1445 aa		11.09	□□□□□ -0.63
SNHG1-223	ENST00000545440	NUTM2B	A6NNL0	878 aa	Predicted RBP	11.08	□□□□□ -0.64
SNHG1-223	ENST00000545440	NUTM2E	B1AL46	878 aa	Predicted RBP	11.08	□□□□□ -0.64
SNHG1-223	ENST00000545440	FOXO3	O43524	673 aa		11.08	□□□□□ -0.64
SNHG1-223	ENST00000545440	SAFB2	Q14151	953 aa	Known RBP eCLIP	11.08	□□□□□ -0.64
SNHG1-223	ENST00000545440	NUTM2A	Q8IVF1	878 aa	Predicted RBP	11.08	□□□□□ -0.64
SNHG1-223	ENST00000545440	TBC1D12	O60347	775 aa		11.07	□□□□□ -0.64
SNHG1-223	ENST00000545440	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	11.07	□□□□□ -0.64
SNHG1-223	ENST00000545440	PHRF1	Q9P1Y6	1649 aa	Known RBP	11.06	□□□□□ -0.64
SNHG1-223	ENST00000545440	SBNO1	A3KN83	1393 aa		11.06	□□□□□ -0.64
SNHG1-223	ENST00000545440	DPYSL4	O14531	572 aa		11.06	□□□□□ -0.64
SNHG1-223	ENST00000545440	NRAP	Q86VF7	1730 aa		11.06	□□□□□ -0.64
SNHG1-223	ENST00000545440	AFF2	P51816	1311 aa		11.06	□□□□□ -0.64
SNHG1-223	ENST00000545440	SPATA31A3	Q5VYP0	1347 aa		11.06	□□□□□ -0.64
SNHG1-223	ENST00000545440	MINK1	Q8N4C8	1332 aa	Predicted RBP	11.06	□□□□□ -0.64
SNHG1-223	ENST00000545440	AKAP12	Q02952	1782 aa		11.05	□□□□□ -0.64
SNHG1-223	ENST00000545440	WASL	O00401	505 aa	Predicted RBP	11.05	□□□□□ -0.64
SNHG1-223	ENST00000545440	XPC	Q01831	940 aa	Predicted RBP	11.05	□□□□□ -0.64
SNHG1-223	ENST00000545440	TRIM26	Q12899	539 aa	Predicted RBP	11.05	□□□□□ -0.64
SNHG1-223	ENST00000545440	ARHGEF10	O15013	1369 aa		11.04	□□□□□ -0.64
SNHG1-223	ENST00000545440	KIF3C	O14782	793 aa		11.04	□□□□□ -0.64
SNHG1-223	ENST00000545440	L3MBTL2	Q969R5	705 aa		11.04	□□□□□ -0.64
SNHG1-223	ENST00000545440	C8orf37	Q96NL8	207 aa		11.04	□□□□□ -0.64
SNHG1-223	ENST00000545440	HIRIP3	Q9BW71	556 aa	Predicted RBP	11.04	□□□□□ -0.64
SNHG1-223	ENST00000545440	PRR36	Q9H6K5	1346 aa		11.04	□□□□□ -0.64
SNHG1-223	ENST00000545440	COL14A1	Q05707	1796 aa	Known RBP	11.03	□□□□□ -0.64
SNHG1-223	ENST00000545440	ADAMTS2	O95450	1211 aa		11.03	□□□□□ -0.64
SNHG1-223	ENST00000545440	SIN3A	Q96ST3	1273 aa		11.03	□□□□□ -0.64
SNHG1-223	ENST00000545440	RALGAPB	Q86X10	1494 aa		11.02	□□□□□ -0.65
SNHG1-223	ENST00000545440	PSME1	Q06323	249 aa		11.02	□□□□□ -0.65
SNHG1-223	ENST00000545440	NBPF1	Q3BBV0	1214 aa		11.02	□□□□□ -0.65
SNHG1-223	ENST00000545440	KRT28	Q7Z3Y7	464 aa		11.02	□□□□□ -0.65
SNHG1-223	ENST00000545440	BRWD3	Q6RI45	1802 aa		11.02	□□□□□ -0.65
SNHG1-223	ENST00000545440	GPRASP1	Q5JY77	1395 aa		11.02	□□□□□ -0.65
SNHG1-223	ENST00000545440	RGS12	O14924	1447 aa		11.01	□□□□□ -0.65
SNHG1-223	ENST00000545440	ATRN	O75882	1429 aa		11.01	□□□□□ -0.65
SNHG1-223	ENST00000545440	SLIT2	O94813	1529 aa		11.01	□□□□□ -0.65
SNHG1-223	ENST00000545440	NGLY1	Q96IV0	654 aa		11.01	□□□□□ -0.65
SNHG1-223	ENST00000545440	CENPJ	Q9HC77	1338 aa	Predicted RBP	11.01	□□□□□ -0.65
SNHG1-223	ENST00000545440	POLR3A	O14802	1390 aa	Predicted RBP	11.01	□□□□□ -0.65
SNHG1-223	ENST00000545440	ROCK2	O75116	1388 aa	Known RBP	11.01	□□□□□ -0.65
SNHG1-223	ENST00000545440	MON2	Q7Z3U7	1717 aa		11.01	□□□□□ -0.65
SNHG1-223	ENST00000545440	BCL9L	Q86UU0	1499 aa		11	□□□□□ -0.65
SNHG1-223	ENST00000545440	RXRB	P28702	533 aa		11	□□□□□ -0.65
SNHG1-223	ENST00000545440	PDIA6	Q15084	440 aa		11	□□□□□ -0.65
SNHG1-223	ENST00000545440	FNBP4	Q8N3X1	1017 aa	Predicted RBP	11	□□□□□ -0.65
SNHG1-223	ENST00000545440	PMFBP1	Q8TBY8	1022 aa		11	□□□□□ -0.65
SNHG1-223	ENST00000545440	EMILIN3	Q9NT22	766 aa		11	□□□□□ -0.65
SNHG1-223	ENST00000545440	GLI3	P10071	1580 aa		10.99	□□□□□ -0.65
SNHG1-223	ENST00000545440	NRK	Q7Z2Y5	1582 aa		10.99	□□□□□ -0.65
SNHG1-223	ENST00000545440	NEUROD1	Q13562	356 aa		10.99	□□□□□ -0.65
SNHG1-223	ENST00000545440	UPF1	Q92900	1129 aa	Known RBP eCLIP	10.99	□□□□□ -0.65	1e-26	■□□□□ 8.6
SNHG1-223	ENST00000545440	TONSL	Q96HA7	1378 aa		10.99	□□□□□ -0.65
SNHG1-223	ENST00000545440	POTEI	P0CG38	1075 aa		10.98	□□□□□ -0.65
SNHG1-223	ENST00000545440	RBM6	P78332	1123 aa	Known RBP	10.98	□□□□□ -0.65
SNHG1-223	ENST00000545440	NUDT16	Q96DE0	195 aa	Known RBP	10.98	□□□□□ -0.65
SNHG1-223	ENST00000545440	USP21	Q9UK80	565 aa		10.98	□□□□□ -0.65
SNHG1-223	ENST00000545440	TRPC5	Q9UL62	973 aa	Predicted RBP	10.98	□□□□□ -0.65

Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms