RNA–Protein interactions for RNA: ENST00000545215.5

LDHA-223, Transcript of lactate dehydrogenase A, human

TSL 1 (best)

Gene LDHA, Length 1,340 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LDHA-223	ENST00000545215	GTF3C3	Q9Y5Q9	886 aa		10.79	□□□□□ -0.68
LDHA-223	ENST00000545215	RGS19	P49795	217 aa		10.78	□□□□□ -0.68
LDHA-223	ENST00000545215	CABLES1	Q8TDN4	633 aa		10.78	□□□□□ -0.68
LDHA-223	ENST00000545215	BTG4	Q9NY30	223 aa		10.78	□□□□□ -0.68
LDHA-223	ENST00000545215	TMEM132A	Q24JP5	1023 aa		10.77	□□□□□ -0.69
LDHA-223	ENST00000545215	POTEH	Q6S545	545 aa		10.77	□□□□□ -0.69
LDHA-223	ENST00000545215	ARHGEF5	Q12774	1597 aa		10.77	□□□□□ -0.69
LDHA-223	ENST00000545215	RGPD3	A6NKT7	1758 aa	Predicted RBP	10.76	□□□□□ -0.69
LDHA-223	ENST00000545215	RGPD4	Q7Z3J3	1758 aa		10.76	□□□□□ -0.69
LDHA-223	ENST00000545215	KIAA1210	Q9ULL0	1709 aa		10.76	□□□□□ -0.69
LDHA-223	ENST00000545215	MET	P08581	1390 aa		10.76	□□□□□ -0.69
LDHA-223	ENST00000545215	TULP1	O00294	542 aa	Predicted RBP	10.76	□□□□□ -0.69
LDHA-223	ENST00000545215	LMTK2	Q8IWU2	1503 aa		10.76	□□□□□ -0.69
LDHA-223	ENST00000545215	GCC2	Q8IWJ2	1684 aa		10.75	□□□□□ -0.69
LDHA-223	ENST00000545215	PPP1R37	O75864	691 aa		10.75	□□□□□ -0.69
LDHA-223	ENST00000545215	SLC15A2	Q16348	729 aa		10.75	□□□□□ -0.69
LDHA-223	ENST00000545215	FBXO22	Q8NEZ5	403 aa		10.75	□□□□□ -0.69
LDHA-223	ENST00000545215	KANK1	Q14678	1352 aa		10.74	□□□□□ -0.69
LDHA-223	ENST00000545215	PRKAR2A	P13861	404 aa	Known RBP	10.74	□□□□□ -0.69
LDHA-223	ENST00000545215	PDE3B	Q13370	1112 aa		10.74	□□□□□ -0.69
LDHA-223	ENST00000545215	NLGN2	Q8NFZ4	835 aa		10.74	□□□□□ -0.69
LDHA-223	ENST00000545215	ARHGEF1	Q92888	912 aa	Known RBP	10.74	□□□□□ -0.69
LDHA-223	ENST00000545215	STK32B	Q9NY57	414 aa		10.74	□□□□□ -0.69
LDHA-223	ENST00000545215	DUOX2	Q9NRD8	1548 aa		10.73	□□□□□ -0.69
LDHA-223	ENST00000545215	IFNL1	Q8IU54	200 aa		10.73	□□□□□ -0.69
LDHA-223	ENST00000545215	USP19	O94966	1318 aa		10.72	□□□□□ -0.69
LDHA-223	ENST00000545215	SPATA31A1	Q5TZJ5	1347 aa		10.71	□□□□□ -0.69
LDHA-223	ENST00000545215	SOX12	O15370	315 aa		10.71	□□□□□ -0.69
LDHA-223	ENST00000545215	NLRP6	P59044	892 aa		10.71	□□□□□ -0.69
LDHA-223	ENST00000545215	EFCAB3	Q8N7B9	438 aa		10.71	□□□□□ -0.69
LDHA-223	ENST00000545215	NRXN3	Q9Y4C0	1643 aa		10.71	□□□□□ -0.7
LDHA-223	ENST00000545215	RRBP1	Q9P2E9	1410 aa	Known RBP	10.7	□□□□□ -0.7
LDHA-223	ENST00000545215	C11orf95	C9JLR9	678 aa	Predicted RBP	10.7	□□□□□ -0.7
LDHA-223	ENST00000545215	FXR2	P51116	673 aa	Known RBP eCLIP	10.7	□□□□□ -0.7	2e-27	■■□□□ 12
LDHA-223	ENST00000545215	E2F4	Q16254	413 aa		10.69	□□□□□ -0.7
LDHA-223	ENST00000545215	KRT28	Q7Z3Y7	464 aa		10.69	□□□□□ -0.7
LDHA-223	ENST00000545215	RBM46	Q8TBY0	533 aa	Known RBP	10.69	□□□□□ -0.7
LDHA-223	ENST00000545215	MAP3K13	O43283	966 aa		10.68	□□□□□ -0.7
LDHA-223	ENST00000545215	KIF12	Q96FN5	646 aa		10.68	□□□□□ -0.7
LDHA-223	ENST00000545215	ABHD8	Q96I13	439 aa		10.68	□□□□□ -0.7
LDHA-223	ENST00000545215	CABP2	Q9NPB3	220 aa		10.68	□□□□□ -0.7
LDHA-223	ENST00000545215	PRDM10	Q9NQV6	1147 aa		10.68	□□□□□ -0.7
LDHA-223	ENST00000545215	PHF8	Q9UPP1	1060 aa		10.68	□□□□□ -0.7
LDHA-223	ENST00000545215	ERBIN	Q96RT1	1412 aa		10.68	□□□□□ -0.7
LDHA-223	ENST00000545215	FSTL1	Q12841	308 aa		10.67	□□□□□ -0.7
LDHA-223	ENST00000545215	ABCA3	Q99758	1704 aa		10.67	□□□□□ -0.7
LDHA-223	ENST00000545215	CCDC144A	A2RUR9	1427 aa		10.67	□□□□□ -0.7
LDHA-223	ENST00000545215	TNS3	Q68CZ2	1445 aa		10.67	□□□□□ -0.7
LDHA-223	ENST00000545215	COL14A1	Q05707	1796 aa	Known RBP	10.67	□□□□□ -0.7
LDHA-223	ENST00000545215	PAK3	O75914	559 aa	Predicted RBP	10.66	□□□□□ -0.7
LDHA-223	ENST00000545215	ARHGEF28	Q8N1W1	1705 aa	Known RBP	10.65	□□□□□ -0.7
LDHA-223	ENST00000545215	UBTF	P17480	764 aa	Known RBP	10.65	□□□□□ -0.7
LDHA-223	ENST00000545215	BARGIN	Q6ZT62	677 aa		10.65	□□□□□ -0.7
LDHA-223	ENST00000545215	ERICH6	Q7L0X2	663 aa		10.65	□□□□□ -0.7
LDHA-223	ENST00000545215	EEA1	Q15075	1411 aa		10.65	□□□□□ -0.7
LDHA-223	ENST00000545215	ROBO2	Q9HCK4	1378 aa		10.64	□□□□□ -0.71
LDHA-223	ENST00000545215	TESPA1	A2RU30	521 aa	Predicted RBP	10.64	□□□□□ -0.71
LDHA-223	ENST00000545215	POLD1	P28340	1107 aa		10.64	□□□□□ -0.71
LDHA-223	ENST00000545215	TXNRD1	Q16881	649 aa		10.64	□□□□□ -0.71
LDHA-223	ENST00000545215	CEP162	Q5TB80	1403 aa		10.64	□□□□□ -0.71
LDHA-223	ENST00000545215	TNRC18	O15417	2968 aa	Predicted RBP	10.64	□□□□□ -0.71
LDHA-223	ENST00000545215	PSME1	Q06323	249 aa		10.63	□□□□□ -0.71
LDHA-223	ENST00000545215	DHX57	Q6P158	1386 aa	Known RBP	10.63	□□□□□ -0.71
LDHA-223	ENST00000545215	PTF1A	Q7RTS3	328 aa		10.62	□□□□□ -0.71
LDHA-223	ENST00000545215	ZC3H15	Q8WU90	426 aa	Known RBP	10.62	□□□□□ -0.71
LDHA-223	ENST00000545215	ARHGEF10	O15013	1369 aa		10.62	□□□□□ -0.71
LDHA-223	ENST00000545215	KIF15	Q9NS87	1388 aa		10.62	□□□□□ -0.71
LDHA-223	ENST00000545215	SEMA3E	O15041	775 aa		10.61	□□□□□ -0.71
LDHA-223	ENST00000545215	BRPF1	P55201	1214 aa	Predicted RBP	10.61	□□□□□ -0.71
LDHA-223	ENST00000545215	SLC16A10	Q8TF71	515 aa		10.61	□□□□□ -0.71
LDHA-223	ENST00000545215	TULP4	Q9NRJ4	1543 aa		10.61	□□□□□ -0.71
LDHA-223	ENST00000545215	SBNO1	A3KN83	1393 aa		10.61	□□□□□ -0.71
LDHA-223	ENST00000545215	COL24A1	Q17RW2	1714 aa		10.6	□□□□□ -0.71
LDHA-223	ENST00000545215	FOXN1	O15353	648 aa		10.6	□□□□□ -0.71
LDHA-223	ENST00000545215	NMRK2	Q9NPI5	230 aa		10.6	□□□□□ -0.71
LDHA-223	ENST00000545215	CDC42BPG	Q6DT37	1551 aa		10.6	□□□□□ -0.71
LDHA-223	ENST00000545215	TECPR2	O15040	1411 aa		10.6	□□□□□ -0.71
LDHA-223	ENST00000545215	RRP7BP	Q9NSQ0	103 aa		10.59	□□□□□ -0.71
LDHA-223	ENST00000545215	HFM1	A2PYH4	1435 aa		10.59	□□□□□ -0.71
LDHA-223	ENST00000545215	NUTM2F	A1L443	756 aa		10.58	□□□□□ -0.71
LDHA-223	ENST00000545215	CCDC85C	A6NKD9	419 aa		10.58	□□□□□ -0.71
LDHA-223	ENST00000545215	MFSD10	Q14728	455 aa		10.58	□□□□□ -0.71
LDHA-223	ENST00000545215	PMFBP1	Q8TBY8	1022 aa		10.58	□□□□□ -0.71
LDHA-223	ENST00000545215	MS4A4A	Q96JQ5	239 aa		10.58	□□□□□ -0.71
LDHA-223	ENST00000545215	USP35	Q9P2H5	1018 aa		10.58	□□□□□ -0.71
LDHA-223	ENST00000545215	SBF2	Q86WG5	1849 aa		10.58	□□□□□ -0.72
LDHA-223	ENST00000545215	PEAK1	Q9H792	1746 aa		10.58	□□□□□ -0.72
LDHA-223	ENST00000545215	C16orf71	Q8IYS4	520 aa	Predicted RBP	10.58	□□□□□ -0.72
LDHA-223	ENST00000545215	OVOS2	A0A0G2JMS6	1433 aa		10.57	□□□□□ -0.72
LDHA-223	ENST00000545215	OVOS2	A0A0J9YW53	1432 aa		10.57	□□□□□ -0.72
LDHA-223	ENST00000545215	OVOS2	Q6IE36	1432 aa		10.57	□□□□□ -0.72
LDHA-223	ENST00000545215	PRAG1	Q86YV5	1406 aa		10.57	□□□□□ -0.72
LDHA-223	ENST00000545215	KIF1A	Q12756	1690 aa		10.56	□□□□□ -0.72
LDHA-223	ENST00000545215	PDE4A	P27815	886 aa		10.56	□□□□□ -0.72
LDHA-223	ENST00000545215	LARP6	Q9BRS8	491 aa	Known RBP	10.56	□□□□□ -0.72
LDHA-223	ENST00000545215	CRISPLD2	Q9H0B8	497 aa		10.56	□□□□□ -0.72
LDHA-223	ENST00000545215	STRN4	Q9NRL3	753 aa		10.56	□□□□□ -0.72
LDHA-223	ENST00000545215	ARIH1	Q9Y4X5	557 aa	Predicted RBP	10.56	□□□□□ -0.72
LDHA-223	ENST00000545215	CTCF	P49711	727 aa	Predicted RBP	10.55	□□□□□ -0.72
LDHA-223	ENST00000545215	PIP4P2	Q8N4L2	257 aa		10.55	□□□□□ -0.72

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