RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 HOXC9P31274 260 aa23.16■■□□□ 1.3
LIG1-204ENST00000542460 ZNF772Q68DY9 489 aaPredicted RBP23.16■■□□□ 1.3
LIG1-204ENST00000542460 RTL1A6NKG5 1358 aa23.16■■□□□ 1.3
LIG1-204ENST00000542460 COL14A1Q05707 1796 aaKnown RBP23.15■■□□□ 1.3
LIG1-204ENST00000542460 AXIN2Q9Y2T1 843 aa23.15■■□□□ 1.3
LIG1-204ENST00000542460 MTHFSP49914 203 aa23.14■■□□□ 1.3
LIG1-204ENST00000542460 FLT4P35916 1363 aa23.14■■□□□ 1.3
LIG1-204ENST00000542460 SLIT2O94813 1529 aa23.14■■□□□ 1.29
LIG1-204ENST00000542460 ABCC6O95255 1503 aa23.14■■□□□ 1.29
LIG1-204ENST00000542460 SMG6Q86US8 1419 aaKnown RBP23.13■■□□□ 1.29
LIG1-204ENST00000542460 AFF2P51816 1311 aa23.13■■□□□ 1.29
LIG1-204ENST00000542460 DIEXFQ68CQ4 756 aaKnown RBP23.13■■□□□ 1.29
LIG1-204ENST00000542460 LTN1O94822 1766 aa23.12■■□□□ 1.29
LIG1-204ENST00000542460 USP21Q9UK80 565 aa23.12■■□□□ 1.29
LIG1-204ENST00000542460 BLMP54132 1417 aaPredicted RBP23.12■■□□□ 1.29
LIG1-204ENST00000542460 CAMTA1Q9Y6Y1 1673 aa23.11■■□□□ 1.29
LIG1-204ENST00000542460 EVA1CP58658 441 aa23.11■■□□□ 1.29
LIG1-204ENST00000542460 HSP90AB2PQ58FF8 381 aa23.11■■□□□ 1.29
LIG1-204ENST00000542460 UNC5CLQ8IV45 518 aa23.11■■□□□ 1.29
LIG1-204ENST00000542460 LMO7Q8WWI1 1683 aa23.11■■□□□ 1.29
LIG1-204ENST00000542460 MYBBP1AQ9BQG0 1328 aaKnown RBP23.11■■□□□ 1.29
LIG1-204ENST00000542460 COL18A1P39060 1754 aa23.1■■□□□ 1.29
LIG1-204ENST00000542460 INSRP06213 1382 aa23.1■■□□□ 1.29
LIG1-204ENST00000542460 MAP2P11137 1827 aaKnown RBP23.1■■□□□ 1.29
LIG1-204ENST00000542460 BCL9LQ86UU0 1499 aa23.09■■□□□ 1.29
LIG1-204ENST00000542460 STRN4Q9NRL3 753 aa23.08■■□□□ 1.29
LIG1-204ENST00000542460 PEAK1Q9H792 1746 aa23.08■■□□□ 1.29
LIG1-204ENST00000542460 COL5A2P05997 1499 aaPredicted RBP23.08■■□□□ 1.28
LIG1-204ENST00000542460 CDK12Q9NYV4 1490 aaPredicted RBP23.08■■□□□ 1.28
LIG1-204ENST00000542460 ANKRD24Q8TF21 1146 aa23.08■■□□□ 1.28
LIG1-204ENST00000542460 PLCH1Q4KWH8 1693 aa23.07■■□□□ 1.28
LIG1-204ENST00000542460 ERBB3P21860 1342 aa23.07■■□□□ 1.28
LIG1-204ENST00000542460 NWD2Q9ULI1 1742 aa23.06■■□□□ 1.28
LIG1-204ENST00000542460 LTV1Q96GA3 475 aaPredicted RBP23.06■■□□□ 1.28
LIG1-204ENST00000542460 CFAP53Q96M91 514 aa23.06■■□□□ 1.28
LIG1-204ENST00000542460 CSB-PGBD3P0DP91 1061 aa23.05■■□□□ 1.28
LIG1-204ENST00000542460 WDR17Q8IZU2 1322 aa23.05■■□□□ 1.28
LIG1-204ENST00000542460 RXRBP28702 533 aa23.03■■□□□ 1.28
LIG1-204ENST00000542460 VPS72Q15906 364 aa23.03■■□□□ 1.28
LIG1-204ENST00000542460 LARP1Q6PKG0 1096 aaKnown RBP23.03■■□□□ 1.28
LIG1-204ENST00000542460 TRPC5Q9UL62 973 aaPredicted RBP23.03■■□□□ 1.28
LIG1-204ENST00000542460 QTRT2Q9H974 415 aaKnown RBP23.03■■□□□ 1.28
LIG1-204ENST00000542460 EIF4A2Q14240 407 aaKnown RBP23.02■■□□□ 1.28
LIG1-204ENST00000542460 TOM1L2Q6ZVM7 507 aa23.02■■□□□ 1.28
LIG1-204ENST00000542460 DIAPH1O60610 1272 aaKnown RBP23.01■■□□□ 1.27
LIG1-204ENST00000542460 NRAPQ86VF7 1730 aa23.01■■□□□ 1.27
LIG1-204ENST00000542460 CRB1P82279 1406 aa23■■□□□ 1.27
LIG1-204ENST00000542460 NLRP2Q9NX02 1062 aa23■■□□□ 1.27
LIG1-204ENST00000542460 CCDC9Q9Y3X0 531 aaKnown RBP23■■□□□ 1.27
LIG1-204ENST00000542460 RGPD5Q99666 1765 aa23■■□□□ 1.27
LIG1-204ENST00000542460 IL13P35225 146 aa22.99■■□□□ 1.27
LIG1-204ENST00000542460 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.99■■□□□ 1.27
LIG1-204ENST00000542460 ATRNO75882 1429 aa22.99■■□□□ 1.27
LIG1-204ENST00000542460 SPATA31A5Q5VU36 1347 aa22.99■■□□□ 1.27
LIG1-204ENST00000542460 SPATA31A7Q8IWB4 1347 aa22.99■■□□□ 1.27
LIG1-204ENST00000542460 CARD10Q9BWT7 1032 aa22.98■■□□□ 1.27
LIG1-204ENST00000542460 NBPF6Q5VWK0 638 aa22.98■■□□□ 1.27
LIG1-204ENST00000542460 NBPF4Q96M43 638 aa22.98■■□□□ 1.27
LIG1-204ENST00000542460 SPATA31A1Q5TZJ5 1347 aa22.97■■□□□ 1.27
LIG1-204ENST00000542460 COL3A1P02461 1466 aaPredicted RBP22.97■■□□□ 1.27
LIG1-204ENST00000542460 GJD4Q96KN9 370 aaPredicted RBP22.97■■□□□ 1.27
LIG1-204ENST00000542460 EYA1Q99502 592 aa22.96■■□□□ 1.27
LIG1-204ENST00000542460 USP35Q9P2H5 1018 aa22.96■■□□□ 1.27
LIG1-204ENST00000542460 NUDCQ9Y266 331 aa22.95■■□□□ 1.26
LIG1-204ENST00000542460 TCP11L2Q8N4U5 519 aa22.94■■□□□ 1.26
LIG1-204ENST00000542460 THRAP3Q9Y2W1 955 aaKnown RBP22.94■■□□□ 1.26
LIG1-204ENST00000542460 RBM6P78332 1123 aaKnown RBP22.93■■□□□ 1.26
LIG1-204ENST00000542460 IGSF1Q8N6C5 1336 aa22.93■■□□□ 1.26
LIG1-204ENST00000542460 FAM208AQ9UK61 1670 aaKnown RBP22.92■■□□□ 1.26
LIG1-204ENST00000542460 U2SURPO15042 1029 aaKnown RBP22.92■■□□□ 1.26
LIG1-204ENST00000542460 BARGINQ6ZT62 677 aa22.91■■□□□ 1.26
LIG1-204ENST00000542460 USHBP1Q8N6Y0 703 aa22.91■■□□□ 1.26
LIG1-204ENST00000542460 RGS12O14924 1447 aa22.91■■□□□ 1.26
LIG1-204ENST00000542460 CCDC184Q52MB2 194 aa22.89■■□□□ 1.26
LIG1-204ENST00000542460 MIER1Q8N108 512 aa22.89■■□□□ 1.26
LIG1-204ENST00000542460 MRS2Q9HD23 443 aa22.89■■□□□ 1.26
LIG1-204ENST00000542460 NCAPD2Q15021 1401 aa22.88■■□□□ 1.25
LIG1-204ENST00000542460 FAM98CQ17RN3 349 aaKnown RBP22.87■■□□□ 1.25
LIG1-204ENST00000542460 SULT6B1Q6IMI4 303 aa22.87■■□□□ 1.25
LIG1-204ENST00000542460 CDCA7Q9BWT1 371 aaPredicted RBP22.87■■□□□ 1.25
LIG1-204ENST00000542460 GLI3P10071 1580 aa22.87■■□□□ 1.25
LIG1-204ENST00000542460 CCER2I3L3R5 266 aa22.87■■□□□ 1.25
LIG1-204ENST00000542460 ONECUT3O60422 494 aaPredicted RBP22.87■■□□□ 1.25
LIG1-204ENST00000542460 U2AF1L5P0DN76 240 aaPredicted RBP22.87■■□□□ 1.25
LIG1-204ENST00000542460 U2AF1Q01081 240 aaKnown RBP eCLIP22.87■■□□□ 1.25
LIG1-204ENST00000542460 IL2RBP14784 551 aa22.86■■□□□ 1.25
LIG1-204ENST00000542460 RAPGEF4Q8WZA2 1011 aa22.86■■□□□ 1.25
LIG1-204ENST00000542460 HMOX1P09601 288 aa22.85■■□□□ 1.25
LIG1-204ENST00000542460 AEBP1Q8IUX7 1158 aa22.85■■□□□ 1.25
LIG1-204ENST00000542460 KDRP35968 1356 aa22.85■■□□□ 1.25
LIG1-204ENST00000542460 RGPD1P0DJD0 1748 aa22.85■■□□□ 1.25
LIG1-204ENST00000542460 WDR43Q15061 677 aaKnown RBP eCLIP22.84■■□□□ 1.252e-6■■■■■ 54.5
LIG1-204ENST00000542460 RGPD2P0DJD1 1756 aa22.84■■□□□ 1.25
LIG1-204ENST00000542460 UPF1Q92900 1129 aaKnown RBP eCLIP22.83■■□□□ 1.25
LIG1-204ENST00000542460 FCHSD2O94868 740 aa22.82■■□□□ 1.24
LIG1-204ENST00000542460 TATP17735 454 aaPredicted RBP22.82■■□□□ 1.24
LIG1-204ENST00000542460 DISP2A7MBM2 1401 aa22.82■■□□□ 1.24
LIG1-204ENST00000542460 A0A0G2JS52 829 aa22.82■■□□□ 1.24
LIG1-204ENST00000542460 MYT1Q01538 1121 aa22.82■■□□□ 1.24
LIG1-204ENST00000542460 PNISRQ8TF01 805 aaKnown RBP22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms