RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 EVC2Q86UK5 1308 aa22.28■■□□□ 1.16
CLSTN3-213ENST00000541953 RGPD3A6NKT7 1758 aaPredicted RBP22.27■■□□□ 1.16
CLSTN3-213ENST00000541953 RGPD4Q7Z3J3 1758 aa22.27■■□□□ 1.16
CLSTN3-213ENST00000541953 SOX12O15370 315 aa22.27■■□□□ 1.16
CLSTN3-213ENST00000541953 NEUROD1Q13562 356 aa22.27■■□□□ 1.16
CLSTN3-213ENST00000541953 TOM1L2Q6ZVM7 507 aa22.26■■□□□ 1.15
CLSTN3-213ENST00000541953 ARHGEF25Q86VW2 580 aa22.25■■□□□ 1.15
CLSTN3-213ENST00000541953 WDR17Q8IZU2 1322 aa22.25■■□□□ 1.15
CLSTN3-213ENST00000541953 MARCH10Q8NA82 808 aaPredicted RBP22.23■■□□□ 1.15
CLSTN3-213ENST00000541953 ANO8Q9HCE9 1232 aaPredicted RBP22.23■■□□□ 1.15
CLSTN3-213ENST00000541953 CASZ1Q86V15 1759 aa22.22■■□□□ 1.15
CLSTN3-213ENST00000541953 CD163L1Q9NR16 1453 aa22.22■■□□□ 1.15
CLSTN3-213ENST00000541953 DDB1Q16531 1140 aa22.22■■□□□ 1.15
CLSTN3-213ENST00000541953 USP54Q70EL1 1684 aa22.21■■□□□ 1.15
CLSTN3-213ENST00000541953 PDGFDQ9GZP0 370 aaPredicted RBP22.19■■□□□ 1.14
CLSTN3-213ENST00000541953 KTN1Q86UP2 1357 aaKnown RBP22.19■■□□□ 1.14
CLSTN3-213ENST00000541953 NBPF14Q5TI25 921 aa22.18■■□□□ 1.14
CLSTN3-213ENST00000541953 PROM2Q8N271 834 aa22.18■■□□□ 1.14
CLSTN3-213ENST00000541953 LTN1O94822 1766 aa22.17■■□□□ 1.14
CLSTN3-213ENST00000541953 TTC21AQ8NDW8 1320 aa22.17■■□□□ 1.14
CLSTN3-213ENST00000541953 ZNF692Q9BU19 519 aaPredicted RBP22.16■■□□□ 1.14
CLSTN3-213ENST00000541953 BCL9O00512 1426 aa22.15■■□□□ 1.14
CLSTN3-213ENST00000541953 SBNO2Q9Y2G9 1366 aa22.15■■□□□ 1.14
CLSTN3-213ENST00000541953 PLSCR1O15162 318 aa22.15■■□□□ 1.14
CLSTN3-213ENST00000541953 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.15■■□□□ 1.14
CLSTN3-213ENST00000541953 KCNH5Q8NCM2 988 aa22.15■■□□□ 1.14
CLSTN3-213ENST00000541953 CARD10Q9BWT7 1032 aa22.15■■□□□ 1.14
CLSTN3-213ENST00000541953 BCL11BQ9C0K0 894 aaPredicted RBP22.15■■□□□ 1.14
CLSTN3-213ENST00000541953 ABCC6O95255 1503 aa22.15■■□□□ 1.14
CLSTN3-213ENST00000541953 NME9Q86XW9 330 aa22.14■■□□□ 1.13
CLSTN3-213ENST00000541953 UTRNP46939 3433 aa22.14■■□□□ 1.13
CLSTN3-213ENST00000541953 TNS2Q63HR2 1409 aa22.14■■□□□ 1.13
CLSTN3-213ENST00000541953 CSB-PGBD3P0DP91 1061 aa22.13■■□□□ 1.13
CLSTN3-213ENST00000541953 USP31Q70CQ4 1352 aa22.12■■□□□ 1.13
CLSTN3-213ENST00000541953 NHSQ6T4R5 1651 aa22.12■■□□□ 1.13
CLSTN3-213ENST00000541953 KCNQ2O43526 872 aa22.12■■□□□ 1.13
CLSTN3-213ENST00000541953 MYOM1P52179 1685 aa22.11■■□□□ 1.13
CLSTN3-213ENST00000541953 C11orf95C9JLR9 678 aaPredicted RBP22.11■■□□□ 1.13
CLSTN3-213ENST00000541953 SPON1Q9HCB6 807 aa22.11■■□□□ 1.13
CLSTN3-213ENST00000541953 CDCA7Q9BWT1 371 aaPredicted RBP22.09■■□□□ 1.13
CLSTN3-213ENST00000541953 CCDC7Q96M83 1385 aa22.09■■□□□ 1.13
CLSTN3-213ENST00000541953 ERBB3P21860 1342 aa22.08■■□□□ 1.13
CLSTN3-213ENST00000541953 CARD11Q9BXL7 1154 aa22.08■■□□□ 1.13
CLSTN3-213ENST00000541953 SLC12A5Q9H2X9 1139 aa22.08■■□□□ 1.13
CLSTN3-213ENST00000541953 PAPPAQ13219 1627 aa22.07■■□□□ 1.12
CLSTN3-213ENST00000541953 A0A1W2PP64 1363 aa22.07■■□□□ 1.12
CLSTN3-213ENST00000541953 ZBTB7AO95365 584 aa22.06■■□□□ 1.12
CLSTN3-213ENST00000541953 TXNRD1Q16881 649 aa22.06■■□□□ 1.12
CLSTN3-213ENST00000541953 PPP1R1BQ9UD71 204 aaPredicted RBP22.06■■□□□ 1.12
CLSTN3-213ENST00000541953 NINLQ9Y2I6 1382 aa22.05■■□□□ 1.12
CLSTN3-213ENST00000541953 EXOC5O00471 708 aa22.05■■□□□ 1.12
CLSTN3-213ENST00000541953 TMC1Q8TDI8 760 aa22.05■■□□□ 1.12
CLSTN3-213ENST00000541953 ACSBG1Q96GR2 724 aa22.05■■□□□ 1.12
CLSTN3-213ENST00000541953 BTAF1O14981 1849 aa22.05■■□□□ 1.12
CLSTN3-213ENST00000541953 EDC4Q6P2E9 1401 aaKnown RBP22.04■■□□□ 1.12
CLSTN3-213ENST00000541953 PTGER2P43116 358 aa22.03■■□□□ 1.12
CLSTN3-213ENST00000541953 NLRP2Q9NX02 1062 aa22.03■■□□□ 1.12
CLSTN3-213ENST00000541953 ANKRD24Q8TF21 1146 aa22.01■■□□□ 1.11
CLSTN3-213ENST00000541953 YY1P25490 414 aa22■■□□□ 1.11
CLSTN3-213ENST00000541953 ATF5Q9Y2D1 282 aaPredicted RBP22■■□□□ 1.11
CLSTN3-213ENST00000541953 RGPD2P0DJD1 1756 aa21.99■■□□□ 1.11
CLSTN3-213ENST00000541953 SLC15A2Q16348 729 aa21.99■■□□□ 1.11
CLSTN3-213ENST00000541953 FAM208AQ9UK61 1670 aaKnown RBP21.98■■□□□ 1.11
CLSTN3-213ENST00000541953 SHANK3Q9BYB0 1731 aa21.98■■□□□ 1.11
CLSTN3-213ENST00000541953 IL2RBP14784 551 aa21.98■■□□□ 1.11
CLSTN3-213ENST00000541953 FBLN1P23142 703 aa21.98■■□□□ 1.11
CLSTN3-213ENST00000541953 HDGFL2Q7Z4V5 671 aaPredicted RBP21.98■■□□□ 1.11
CLSTN3-213ENST00000541953 TESK2Q96S53 571 aa21.98■■□□□ 1.11
CLSTN3-213ENST00000541953 STK32BQ9NY57 414 aa21.97■■□□□ 1.11
CLSTN3-213ENST00000541953 TONSLQ96HA7 1378 aa21.97■■□□□ 1.11
CLSTN3-213ENST00000541953 ZNF827Q17R98 1081 aa21.95■■□□□ 1.1
CLSTN3-213ENST00000541953 SGIP1Q9BQI5 828 aa21.95■■□□□ 1.1
CLSTN3-213ENST00000541953 LRRC4BQ9NT99 713 aa21.94■■□□□ 1.1
CLSTN3-213ENST00000541953 DOT1LQ8TEK3 1739 aa21.94■■□□□ 1.1
CLSTN3-213ENST00000541953 GOLGB1Q14789 3259 aaKnown RBP21.93■■□□□ 1.1
CLSTN3-213ENST00000541953 KAT6BQ8WYB5 2073 aa21.93■■□□□ 1.1
CLSTN3-213ENST00000541953 LTV1Q96GA3 475 aaPredicted RBP21.93■■□□□ 1.1
CLSTN3-213ENST00000541953 TUBGCP6Q96RT7 1819 aa21.93■■□□□ 1.1
CLSTN3-213ENST00000541953 ST20-MTHFSA0A0A6YYL1 179 aa21.92■■□□□ 1.1
CLSTN3-213ENST00000541953 TERF2IPQ9NYB0 399 aa21.92■■□□□ 1.1
CLSTN3-213ENST00000541953 IP6K1Q92551 441 aa21.91■■□□□ 1.1
CLSTN3-213ENST00000541953 FHDC1Q9C0D6 1143 aaPredicted RBP21.91■■□□□ 1.1
CLSTN3-213ENST00000541953 MAP3K19Q56UN5 1328 aa21.9■■□□□ 1.1
CLSTN3-213ENST00000541953 MEGF6O75095 1541 aa21.9■■□□□ 1.1
CLSTN3-213ENST00000541953 MTFR1LQ9H019 292 aa21.89■■□□□ 1.09
CLSTN3-213ENST00000541953 PUS7Q96PZ0 661 aaKnown RBP21.88■■□□□ 1.09
CLSTN3-213ENST00000541953 NSD2O96028 1365 aa21.87■■□□□ 1.09
CLSTN3-213ENST00000541953 HOXC9P31274 260 aa21.87■■□□□ 1.09
CLSTN3-213ENST00000541953 KCNQ4P56696 695 aa21.87■■□□□ 1.09
CLSTN3-213ENST00000541953 DDX54Q8TDD1 881 aaKnown RBP21.87■■□□□ 1.09
CLSTN3-213ENST00000541953 SYT17Q9BSW7 474 aa21.87■■□□□ 1.09
CLSTN3-213ENST00000541953 QSER1Q2KHR3 1735 aa21.86■■□□□ 1.09
CLSTN3-213ENST00000541953 LY75O60449 1722 aa21.86■■□□□ 1.09
CLSTN3-213ENST00000541953 COL24A1Q17RW2 1714 aa21.84■■□□□ 1.09
CLSTN3-213ENST00000541953 AKT1S1Q96B36 256 aa21.84■■□□□ 1.09
CLSTN3-213ENST00000541953 ANKRD36BQ8N2N9 1353 aa21.84■■□□□ 1.09
CLSTN3-213ENST00000541953 RRS1Q15050 365 aaKnown RBP21.83■■□□□ 1.09
CLSTN3-213ENST00000541953 COG3Q96JB2 828 aa21.83■■□□□ 1.09
CLSTN3-213ENST00000541953 KIF20BQ96Q89 1820 aa21.81■■□□□ 1.08
CLSTN3-213ENST00000541953 USHBP1Q8N6Y0 703 aa21.81■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms