RNA–Protein interactions for RNA: ENST00000541366.1

COPA-205, Transcript of coatomer protein complex subunit alpha, humanhuman

TSL 2

Gene COPA, Length 616 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPA-205ENST00000541366 C11orf95C9JLR9 678 aaPredicted RBP17.27■□□□□ 0.36
COPA-205ENST00000541366 SRPK2P78362 688 aaKnown RBP17.27■□□□□ 0.36
COPA-205ENST00000541366 TOM1L2Q6ZVM7 507 aa17.27■□□□□ 0.36
COPA-205ENST00000541366 AXIN2Q9Y2T1 843 aa17.27■□□□□ 0.36
COPA-205ENST00000541366 NLRP6P59044 892 aa17.26■□□□□ 0.35
COPA-205ENST00000541366 NBPF1Q3BBV0 1214 aa17.26■□□□□ 0.35
COPA-205ENST00000541366 STAC3Q96MF2 364 aa17.26■□□□□ 0.35
COPA-205ENST00000541366 AATKQ6ZMQ8 1374 aa17.26■□□□□ 0.35
COPA-205ENST00000541366 FHDC1Q9C0D6 1143 aaPredicted RBP17.25■□□□□ 0.35
COPA-205ENST00000541366 TXNRD1Q16881 649 aa17.24■□□□□ 0.35
COPA-205ENST00000541366 SYT17Q9BSW7 474 aa17.24■□□□□ 0.35
COPA-205ENST00000541366 COL18A1P39060 1754 aa17.24■□□□□ 0.35
COPA-205ENST00000541366 CABP1Q9NZU7 370 aa17.23■□□□□ 0.35
COPA-205ENST00000541366 SLIT3O75094 1523 aa17.22■□□□□ 0.35
COPA-205ENST00000541366 WNK3Q9BYP7 1800 aa17.22■□□□□ 0.35
COPA-205ENST00000541366 SLC15A2Q16348 729 aa17.22■□□□□ 0.35
COPA-205ENST00000541366 STK32BQ9NY57 414 aa17.22■□□□□ 0.35
COPA-205ENST00000541366 WDR17Q8IZU2 1322 aa17.21■□□□□ 0.35
COPA-205ENST00000541366 SENP3-EIF4A1A0A087X0R7 540 aa17.21■□□□□ 0.35
COPA-205ENST00000541366 USP6P35125 1406 aa17.21■□□□□ 0.34
COPA-205ENST00000541366 AKAP12Q02952 1782 aa17.2■□□□□ 0.34
COPA-205ENST00000541366 RGPD5Q99666 1765 aa17.2■□□□□ 0.34
COPA-205ENST00000541366 SOX12O15370 315 aa17.2■□□□□ 0.34
COPA-205ENST00000541366 SGIP1Q9BQI5 828 aa17.2■□□□□ 0.34
COPA-205ENST00000541366 PIK3C2AO00443 1686 aa17.19■□□□□ 0.34
COPA-205ENST00000541366 CENPJQ9HC77 1338 aaPredicted RBP17.19■□□□□ 0.34
COPA-205ENST00000541366 GOLGB1Q14789 3259 aaKnown RBP17.18■□□□□ 0.34
COPA-205ENST00000541366 CHD4Q14839 1912 aa17.18■□□□□ 0.34
COPA-205ENST00000541366 BCL9O00512 1426 aa17.18■□□□□ 0.34
COPA-205ENST00000541366 CSB-PGBD3P0DP91 1061 aa17.17■□□□□ 0.34
COPA-205ENST00000541366 C1QTNF8P60827 252 aa17.17■□□□□ 0.34
COPA-205ENST00000541366 CPSF1Q10570 1443 aaKnown RBP17.17■□□□□ 0.34
COPA-205ENST00000541366 ARHGEF25Q86VW2 580 aa17.17■□□□□ 0.34
COPA-205ENST00000541366 MTFR1LQ9H019 292 aa17.17■□□□□ 0.34
COPA-205ENST00000541366 KIAA1210Q9ULL0 1709 aa17.17■□□□□ 0.34
COPA-205ENST00000541366 BRD4O60885 1362 aaPredicted RBP17.16■□□□□ 0.34
COPA-205ENST00000541366 ACSBG1Q96GR2 724 aa17.16■□□□□ 0.34
COPA-205ENST00000541366 CDCA7Q9BWT1 371 aaPredicted RBP17.16■□□□□ 0.34
COPA-205ENST00000541366 EXOC5O00471 708 aa17.15■□□□□ 0.34
COPA-205ENST00000541366 CARD10Q9BWT7 1032 aa17.15■□□□□ 0.34
COPA-205ENST00000541366 QRICH2Q9H0J4 1663 aa17.14■□□□□ 0.33
COPA-205ENST00000541366 PPP4R3CPQ6ZMV5 832 aa17.14■□□□□ 0.33
COPA-205ENST00000541366 ARXQ96QS3 562 aa17.14■□□□□ 0.33
COPA-205ENST00000541366 ZNF827Q17R98 1081 aa17.12■□□□□ 0.33
COPA-205ENST00000541366 TTC21BQ7Z4L5 1316 aa17.12■□□□□ 0.33
COPA-205ENST00000541366 CEP350Q5VT06 3117 aa17.12■□□□□ 0.33
COPA-205ENST00000541366 TNS2Q63HR2 1409 aa17.11■□□□□ 0.33
COPA-205ENST00000541366 KAT6BQ8WYB5 2073 aa17.11■□□□□ 0.33
COPA-205ENST00000541366 NHSQ6T4R5 1651 aa17.1■□□□□ 0.33
COPA-205ENST00000541366 GPR162Q16538 588 aa17.09■□□□□ 0.33
COPA-205ENST00000541366 KCNH5Q8NCM2 988 aa17.09■□□□□ 0.33
COPA-205ENST00000541366 LRRC4BQ9NT99 713 aa17.09■□□□□ 0.33
COPA-205ENST00000541366 PAPPAQ13219 1627 aa17.09■□□□□ 0.33
COPA-205ENST00000541366 TRPM1Q7Z4N2 1603 aa17.08■□□□□ 0.32
COPA-205ENST00000541366 NFAT5O94916 1531 aa17.08■□□□□ 0.32
COPA-205ENST00000541366 CCDC7Q96M83 1385 aa17.08■□□□□ 0.32
COPA-205ENST00000541366 KLHL34Q8N239 644 aa17.08■□□□□ 0.32
COPA-205ENST00000541366 MAP3K5Q99683 1374 aa17.07■□□□□ 0.32
COPA-205ENST00000541366 BTAF1O14981 1849 aa17.07■□□□□ 0.32
COPA-205ENST00000541366 PELP1Q8IZL8 1130 aaKnown RBP17.06■□□□□ 0.32
COPA-205ENST00000541366 EVC2Q86UK5 1308 aa17.05■□□□□ 0.32
COPA-205ENST00000541366 NLRP2Q9NX02 1062 aa17.05■□□□□ 0.32
COPA-205ENST00000541366 IFFO2Q5TF58 517 aa17.04■□□□□ 0.32
COPA-205ENST00000541366 ZNF692Q9BU19 519 aaPredicted RBP17.04■□□□□ 0.32
COPA-205ENST00000541366 TTC21AQ8NDW8 1320 aa17.03■□□□□ 0.32
COPA-205ENST00000541366 ABCC6O95255 1503 aa17.03■□□□□ 0.32
COPA-205ENST00000541366 GIGYF1O75420 1035 aaPredicted RBP17.03■□□□□ 0.32
COPA-205ENST00000541366 KCNQ4P56696 695 aa17.03■□□□□ 0.32
COPA-205ENST00000541366 IL2RBP14784 551 aa17.02■□□□□ 0.32
COPA-205ENST00000541366 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.02■□□□□ 0.32
COPA-205ENST00000541366 NLGN2Q8NFZ4 835 aa17.02■□□□□ 0.32
COPA-205ENST00000541366 AKT1S1Q96B36 256 aa17.02■□□□□ 0.32
COPA-205ENST00000541366 KTN1Q86UP2 1357 aaKnown RBP17.02■□□□□ 0.31
COPA-205ENST00000541366 ERBB3P21860 1342 aa17.01■□□□□ 0.31
COPA-205ENST00000541366 MAPK8IP2Q13387 824 aaPredicted RBP17.01■□□□□ 0.31
COPA-205ENST00000541366 PNPLA7Q6ZV29 1317 aa17■□□□□ 0.31
COPA-205ENST00000541366 SHANK3Q9BYB0 1731 aa16.99■□□□□ 0.31
COPA-205ENST00000541366 NME9Q86XW9 330 aa16.99■□□□□ 0.31
COPA-205ENST00000541366 ANKRD24Q8TF21 1146 aa16.99■□□□□ 0.31
COPA-205ENST00000541366 POLD1P28340 1107 aa16.98■□□□□ 0.31
COPA-205ENST00000541366 L3MBTL2Q969R5 705 aa16.98■□□□□ 0.31
COPA-205ENST00000541366 TUBGCP6Q96RT7 1819 aa16.98■□□□□ 0.31
COPA-205ENST00000541366 LTN1O94822 1766 aa16.97■□□□□ 0.31
COPA-205ENST00000541366 YBX3P16989 372 aaKnown RBP eCLIP16.97■□□□□ 0.318e-10■□□□□ 11.1
COPA-205ENST00000541366 DDX54Q8TDD1 881 aaKnown RBP16.97■□□□□ 0.31
COPA-205ENST00000541366 SLC16A10Q8TF71 515 aa16.97■□□□□ 0.31
COPA-205ENST00000541366 TFCP2L1Q9NZI6 479 aa16.96■□□□□ 0.31
COPA-205ENST00000541366 COL24A1Q17RW2 1714 aa16.96■□□□□ 0.3
COPA-205ENST00000541366 MON2Q7Z3U7 1717 aa16.96■□□□□ 0.3
COPA-205ENST00000541366 USP31Q70CQ4 1352 aa16.95■□□□□ 0.3
COPA-205ENST00000541366 QSER1Q2KHR3 1735 aa16.95■□□□□ 0.3
COPA-205ENST00000541366 SLC27A3Q5K4L6 730 aa16.94■□□□□ 0.3
COPA-205ENST00000541366 SYTL4Q96C24 671 aaPredicted RBP16.94■□□□□ 0.3
COPA-205ENST00000541366 SBNO2Q9Y2G9 1366 aa16.93■□□□□ 0.3
COPA-205ENST00000541366 LTV1Q96GA3 475 aaPredicted RBP16.93■□□□□ 0.3
COPA-205ENST00000541366 CD163L1Q9NR16 1453 aa16.93■□□□□ 0.3
COPA-205ENST00000541366 PRIM1P49642 420 aaKnown RBP16.92■□□□□ 0.3
COPA-205ENST00000541366 USP54Q70EL1 1684 aa16.91■□□□□ 0.3
COPA-205ENST00000541366 ROCK2O75116 1388 aaKnown RBP16.91■□□□□ 0.3
COPA-205ENST00000541366 MSL1Q68DK7 614 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms