RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 ZBTB33Q86T24 672 aa8.59□□□□□ -1.03
VPS13A-213ENST00000539950 TERTO14746 1132 aaKnown RBP8.58□□□□□ -1.04
VPS13A-213ENST00000539950 CCDC116Q8IYX3 515 aa8.58□□□□□ -1.04
VPS13A-213ENST00000539950 ADAM32Q8TC27 787 aa8.58□□□□□ -1.04
VPS13A-213ENST00000539950 SLC10A4Q96EP9 437 aa8.58□□□□□ -1.04
VPS13A-213ENST00000539950 SCARF1Q14162 830 aa8.57□□□□□ -1.04
VPS13A-213ENST00000539950 KCTD15Q96SI1 283 aaPredicted RBP8.57□□□□□ -1.04
VPS13A-213ENST00000539950 GPSM3Q9Y4H4 160 aa8.57□□□□□ -1.04
VPS13A-213ENST00000539950 C6orf118Q5T5N4 469 aa8.56□□□□□ -1.04
VPS13A-213ENST00000539950 MEIOBQ8N635 442 aa8.56□□□□□ -1.04
VPS13A-213ENST00000539950 EMILIN1Q9Y6C2 1016 aa8.56□□□□□ -1.04
VPS13A-213ENST00000539950 SOBPA7XYQ1 873 aa8.55□□□□□ -1.04
VPS13A-213ENST00000539950 PPP1R26Q5T8A7 1209 aaPredicted RBP8.55□□□□□ -1.04
VPS13A-213ENST00000539950 PNMA1Q8ND90 353 aa8.55□□□□□ -1.04
VPS13A-213ENST00000539950 GJD4Q96KN9 370 aaPredicted RBP8.55□□□□□ -1.04
VPS13A-213ENST00000539950 CDV3Q9UKY7 258 aaKnown RBP8.55□□□□□ -1.04
VPS13A-213ENST00000539950 LINC00528Q8N1L1 170 aa8.54□□□□□ -1.04
VPS13A-213ENST00000539950 NXF1Q9UBU9 619 aaKnown RBP8.54□□□□□ -1.04
VPS13A-213ENST00000539950 BMP2P12643 396 aa8.53□□□□□ -1.04
VPS13A-213ENST00000539950 VEGFBP49765 207 aa8.53□□□□□ -1.04
VPS13A-213ENST00000539950 CBLBQ13191 982 aa8.53□□□□□ -1.04
VPS13A-213ENST00000539950 INTS6LQ5JSJ4 861 aaKnown RBP8.53□□□□□ -1.04
VPS13A-213ENST00000539950 UPP2O95045 317 aa8.51□□□□□ -1.05
VPS13A-213ENST00000539950 PRKCSHP14314 528 aaPredicted RBP8.51□□□□□ -1.05
VPS13A-213ENST00000539950 DZIP3Q86Y13 1208 aaKnown RBP8.51□□□□□ -1.05
VPS13A-213ENST00000539950 PGPEP1Q9NXJ5 209 aa8.51□□□□□ -1.05
VPS13A-213ENST00000539950 RAB15P59190 212 aa8.5□□□□□ -1.05
VPS13A-213ENST00000539950 NBPF20Q3BBV1 942 aa8.5□□□□□ -1.05
VPS13A-213ENST00000539950 Q6ZVU0 165 aa8.5□□□□□ -1.05
VPS13A-213ENST00000539950 TSEN34Q9BSV6 310 aaKnown RBP8.5□□□□□ -1.05
VPS13A-213ENST00000539950 TMPRSS4Q9NRS4 437 aa8.5□□□□□ -1.05
VPS13A-213ENST00000539950 MAN1A2O60476 641 aa8.49□□□□□ -1.05
VPS13A-213ENST00000539950 DHX9Q08211 1270 aaKnown RBP8.49□□□□□ -1.05
VPS13A-213ENST00000539950 MTMR14Q8NCE2 650 aa8.49□□□□□ -1.05
VPS13A-213ENST00000539950 BANK1Q8NDB2 785 aa8.49□□□□□ -1.05
VPS13A-213ENST00000539950 SOS2Q07890 1332 aaPredicted RBP8.49□□□□□ -1.05
VPS13A-213ENST00000539950 ZBBXA8MT70 800 aa8.48□□□□□ -1.05
VPS13A-213ENST00000539950 H3BM21 787 aa8.48□□□□□ -1.05
VPS13A-213ENST00000539950 FBXO45P0C2W1 286 aa8.48□□□□□ -1.05
VPS13A-213ENST00000539950 SNRKQ9NRH2 765 aa8.48□□□□□ -1.05
VPS13A-213ENST00000539950 DNMT3LQ9UJW3 386 aa8.48□□□□□ -1.05
VPS13A-213ENST00000539950 WIPF1O43516 503 aa8.47□□□□□ -1.05
VPS13A-213ENST00000539950 GPR37L1O60883 481 aa8.47□□□□□ -1.05
VPS13A-213ENST00000539950 NPAS3Q8IXF0 933 aa8.47□□□□□ -1.05
VPS13A-213ENST00000539950 SLC16A10Q8TF71 515 aa8.47□□□□□ -1.05
VPS13A-213ENST00000539950 ESPNB1AK53 854 aa8.46□□□□□ -1.06
VPS13A-213ENST00000539950 ERVH48-1M5A8F1 160 aa8.46□□□□□ -1.06
VPS13A-213ENST00000539950 ZNF784Q8NCA9 323 aaPredicted RBP8.46□□□□□ -1.06
VPS13A-213ENST00000539950 AGBL1Q96MI9 1066 aa8.46□□□□□ -1.06
VPS13A-213ENST00000539950 PCDHB9Q9Y5E1 797 aa8.45□□□□□ -1.06
VPS13A-213ENST00000539950 ERBB4Q15303 1308 aa8.45□□□□□ -1.06
VPS13A-213ENST00000539950 SOCS7O14512 581 aa8.44□□□□□ -1.06
VPS13A-213ENST00000539950 SPINT1O43278 529 aa8.44□□□□□ -1.06
VPS13A-213ENST00000539950 LILRA1O75019 489 aa8.44□□□□□ -1.06
VPS13A-213ENST00000539950 GIGYF1O75420 1035 aaPredicted RBP8.44□□□□□ -1.06
VPS13A-213ENST00000539950 GMPRP36959 345 aa8.44□□□□□ -1.06
VPS13A-213ENST00000539950 RELBQ01201 579 aa8.44□□□□□ -1.06
VPS13A-213ENST00000539950 IRF7Q92985 503 aa8.44□□□□□ -1.06
VPS13A-213ENST00000539950 TTLL8A6PVC2 850 aa8.43□□□□□ -1.06
VPS13A-213ENST00000539950 ADD1P35611 737 aaKnown RBP8.43□□□□□ -1.06
VPS13A-213ENST00000539950 NDUFB9Q9Y6M9 179 aa8.43□□□□□ -1.06
VPS13A-213ENST00000539950 FIGNL2A6NMB9 653 aa8.42□□□□□ -1.06
VPS13A-213ENST00000539950 CTSOP43234 321 aaPredicted RBP8.41□□□□□ -1.06
VPS13A-213ENST00000539950 NR1H3Q13133 447 aa8.41□□□□□ -1.06
VPS13A-213ENST00000539950 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.41□□□□□ -1.06
VPS13A-213ENST00000539950 SEPT12Q8IYM1 358 aa8.41□□□□□ -1.06
VPS13A-213ENST00000539950 KDF1Q8NAX2 398 aaPredicted RBP8.41□□□□□ -1.06
VPS13A-213ENST00000539950 INSM2Q96T92 566 aaPredicted RBP8.41□□□□□ -1.06
VPS13A-213ENST00000539950 ZNF395Q9H8N7 513 aaPredicted RBP8.41□□□□□ -1.06
VPS13A-213ENST00000539950 CYLDQ9NQC7 956 aa8.41□□□□□ -1.06
VPS13A-213ENST00000539950 PPFIA3O75145 1194 aa8.4□□□□□ -1.06
VPS13A-213ENST00000539950 ADH1AP07327 375 aa8.4□□□□□ -1.06
VPS13A-213ENST00000539950 INSM1Q01101 510 aaPredicted RBP8.39□□□□□ -1.07
VPS13A-213ENST00000539950 VSIG8P0DPA2 414 aa8.38□□□□□ -1.07
VPS13A-213ENST00000539950 PTSQ03393 145 aa8.38□□□□□ -1.07
VPS13A-213ENST00000539950 TBC1D2BQ9UPU7 963 aa8.38□□□□□ -1.07
VPS13A-213ENST00000539950 APBB1O00213 710 aa8.37□□□□□ -1.07
VPS13A-213ENST00000539950 RNF217Q8TC41 542 aa8.37□□□□□ -1.07
VPS13A-213ENST00000539950 POLMQ9NP87 494 aaPredicted RBP8.37□□□□□ -1.07
VPS13A-213ENST00000539950 PTGIRP43119 386 aa8.36□□□□□ -1.07
VPS13A-213ENST00000539950 LORP23490 312 aaPredicted RBP8.35□□□□□ -1.07
VPS13A-213ENST00000539950 FOXD4L5Q5VV16 416 aaPredicted RBP8.35□□□□□ -1.07
VPS13A-213ENST00000539950 ZNF330Q9Y3S2 320 aaPredicted RBP8.35□□□□□ -1.07
VPS13A-213ENST00000539950 SCTRP47872 440 aa8.34□□□□□ -1.07
VPS13A-213ENST00000539950 MCCD1P59942 119 aaPredicted RBP8.34□□□□□ -1.07
VPS13A-213ENST00000539950 ERVK-9P63128 1117 aa8.34□□□□□ -1.07
VPS13A-213ENST00000539950 RNF20Q5VTR2 975 aa8.34□□□□□ -1.07
VPS13A-213ENST00000539950 CCDC155Q8N6L0 562 aa8.34□□□□□ -1.07
VPS13A-213ENST00000539950 SLC35F4A4IF30 521 aa8.33□□□□□ -1.08
VPS13A-213ENST00000539950 ATP5J2-PTCD1G3V325 749 aa8.33□□□□□ -1.08
VPS13A-213ENST00000539950 IRF5Q13568 498 aa8.33□□□□□ -1.08
VPS13A-213ENST00000539950 STK17AQ9UEE5 414 aa8.33□□□□□ -1.08
VPS13A-213ENST00000539950 PCDHB11Q9Y5F2 797 aa8.33□□□□□ -1.08
VPS13A-213ENST00000539950 CC2D2BQ6DHV5 1058 aa8.32□□□□□ -1.08
VPS13A-213ENST00000539950 CCDC125Q86Z20 511 aa8.32□□□□□ -1.08
VPS13A-213ENST00000539950 GPR161Q8N6U8 529 aaKnown RBP8.31□□□□□ -1.08
VPS13A-213ENST00000539950 ZNF592Q92610 1267 aa8.31□□□□□ -1.08
VPS13A-213ENST00000539950 CEP126Q9P2H0 1117 aa8.31□□□□□ -1.08
VPS13A-213ENST00000539950 SENP3-EIF4A1A0A087X0R7 540 aa8.3□□□□□ -1.08
VPS13A-213ENST00000539950 ZSCAN1Q8NBB4 408 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms