RNA–Protein interactions for RNA: ENST00000539662.1

HMGA2-209, Transcript of high mobility group AT-hook 2, humanhuman

TSL 3

Gene HMGA2, Length 485 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-209ENST00000539662 GGNBP2Q9H3C7 697 aa14.91□□□□□ -0.02
HMGA2-209ENST00000539662 USP35Q9P2H5 1018 aa14.91□□□□□ -0.02
HMGA2-209ENST00000539662 KIF20BQ96Q89 1820 aa14.91□□□□□ -0.02
HMGA2-209ENST00000539662 SPATA31A1Q5TZJ5 1347 aa14.91□□□□□ -0.02
HMGA2-209ENST00000539662 ONECUT3O60422 494 aaPredicted RBP14.9□□□□□ -0.02
HMGA2-209ENST00000539662 KCNH5Q8NCM2 988 aa14.9□□□□□ -0.02
HMGA2-209ENST00000539662 NSD3Q9BZ95 1437 aa14.9□□□□□ -0.02
HMGA2-209ENST00000539662 EP400Q96L91 3159 aa14.89□□□□□ -0.03
HMGA2-209ENST00000539662 EVA1CP58658 441 aa14.89□□□□□ -0.03
HMGA2-209ENST00000539662 UPF1Q92900 1129 aaKnown RBP eCLIP14.89□□□□□ -0.03
HMGA2-209ENST00000539662 KIF7Q2M1P5 1343 aa14.89□□□□□ -0.03
HMGA2-209ENST00000539662 THSD7AQ9UPZ6 1657 aa14.88□□□□□ -0.03
HMGA2-209ENST00000539662 FAM182BQ5T319 152 aa14.87□□□□□ -0.03
HMGA2-209ENST00000539662 PANK3Q9H999 370 aa14.87□□□□□ -0.03
HMGA2-209ENST00000539662 COG3Q96JB2 828 aa14.86□□□□□ -0.03
HMGA2-209ENST00000539662 A0A0G2JS52 829 aa14.85□□□□□ -0.03
HMGA2-209ENST00000539662 MYT1Q01538 1121 aa14.85□□□□□ -0.03
HMGA2-209ENST00000539662 RRS1Q15050 365 aaKnown RBP14.84□□□□□ -0.03
HMGA2-209ENST00000539662 MAP3K19Q56UN5 1328 aa14.84□□□□□ -0.03
HMGA2-209ENST00000539662 CRB1P82279 1406 aa14.83□□□□□ -0.03
HMGA2-209ENST00000539662 PEAK1Q9H792 1746 aa14.83□□□□□ -0.03
HMGA2-209ENST00000539662 TOM1L2Q6ZVM7 507 aa14.83□□□□□ -0.04
HMGA2-209ENST00000539662 WDR17Q8IZU2 1322 aa14.83□□□□□ -0.04
HMGA2-209ENST00000539662 WNK3Q9BYP7 1800 aa14.82□□□□□ -0.04
HMGA2-209ENST00000539662 KRT27Q7Z3Y8 459 aa14.82□□□□□ -0.04
HMGA2-209ENST00000539662 TCP11L2Q8N4U5 519 aa14.82□□□□□ -0.04
HMGA2-209ENST00000539662 WASHC2AQ641Q2 1341 aa14.82□□□□□ -0.04
HMGA2-209ENST00000539662 RGPD2P0DJD1 1756 aa14.82□□□□□ -0.04
HMGA2-209ENST00000539662 BARGINQ6ZT62 677 aa14.81□□□□□ -0.04
HMGA2-209ENST00000539662 LTV1Q96GA3 475 aaPredicted RBP14.81□□□□□ -0.04
HMGA2-209ENST00000539662 ABCC6O95255 1503 aa14.81□□□□□ -0.04
HMGA2-209ENST00000539662 CSB-PGBD3P0DP91 1061 aa14.8□□□□□ -0.04
HMGA2-209ENST00000539662 HOXC9P31274 260 aa14.8□□□□□ -0.04
HMGA2-209ENST00000539662 ANKRD24Q8TF21 1146 aa14.8□□□□□ -0.04
HMGA2-209ENST00000539662 IP6K1Q92551 441 aa14.8□□□□□ -0.04
HMGA2-209ENST00000539662 ERBB3P21860 1342 aa14.8□□□□□ -0.04
HMGA2-209ENST00000539662 CCDC7Q96M83 1385 aa14.8□□□□□ -0.04
HMGA2-209ENST00000539662 ANKRD26Q9UPS8 1709 aa14.8□□□□□ -0.04
HMGA2-209ENST00000539662 PARP4Q9UKK3 1724 aaKnown RBP14.79□□□□□ -0.04
HMGA2-209ENST00000539662 EMILIN1Q9Y6C2 1016 aa14.79□□□□□ -0.04
HMGA2-209ENST00000539662 LRRC37A3O60309 1634 aa14.78□□□□□ -0.04
HMGA2-209ENST00000539662 CGNL1Q0VF96 1302 aa14.78□□□□□ -0.04
HMGA2-209ENST00000539662 CARD10Q9BWT7 1032 aa14.78□□□□□ -0.04
HMGA2-209ENST00000539662 MAP2P11137 1827 aaKnown RBP14.78□□□□□ -0.04
HMGA2-209ENST00000539662 TNNT2P45379 298 aaPredicted RBP14.77□□□□□ -0.05
HMGA2-209ENST00000539662 AMPHP49418 695 aa14.77□□□□□ -0.05
HMGA2-209ENST00000539662 HSP90AB2PQ58FF8 381 aa14.77□□□□□ -0.05
HMGA2-209ENST00000539662 NLRP2Q9NX02 1062 aa14.77□□□□□ -0.05
HMGA2-209ENST00000539662 THRAP3Q9Y2W1 955 aaKnown RBP14.77□□□□□ -0.05
HMGA2-209ENST00000539662 DISP2A7MBM2 1401 aa14.76□□□□□ -0.05
HMGA2-209ENST00000539662 BLMP54132 1417 aaPredicted RBP14.76□□□□□ -0.05
HMGA2-209ENST00000539662 FAM208AQ9UK61 1670 aaKnown RBP14.75□□□□□ -0.05
HMGA2-209ENST00000539662 PER1O15534 1290 aaPredicted RBP14.75□□□□□ -0.05
HMGA2-209ENST00000539662 AMER1Q5JTC6 1135 aaPredicted RBP14.74□□□□□ -0.05
HMGA2-209ENST00000539662 PPM1GO15355 546 aaPredicted RBP14.73□□□□□ -0.05
HMGA2-209ENST00000539662 DEFB132Q7Z7B7 95 aa14.73□□□□□ -0.05
HMGA2-209ENST00000539662 USHBP1Q8N6Y0 703 aa14.73□□□□□ -0.05
HMGA2-209ENST00000539662 POLKQ9UBT6 870 aa14.73□□□□□ -0.05
HMGA2-209ENST00000539662 RTL1A6NKG5 1358 aa14.73□□□□□ -0.05
HMGA2-209ENST00000539662 PDE3BQ13370 1112 aa14.72□□□□□ -0.05
HMGA2-209ENST00000539662 CNGB1Q14028 1251 aaPredicted RBP14.72□□□□□ -0.05
HMGA2-209ENST00000539662 NBPF6Q5VWK0 638 aa14.72□□□□□ -0.05
HMGA2-209ENST00000539662 MARCH10Q8NA82 808 aaPredicted RBP14.72□□□□□ -0.05
HMGA2-209ENST00000539662 NBPF4Q96M43 638 aa14.72□□□□□ -0.05
HMGA2-209ENST00000539662 TNS1Q9HBL0 1735 aaKnown RBP14.72□□□□□ -0.05
HMGA2-209ENST00000539662 DDB1Q16531 1140 aa14.71□□□□□ -0.05
HMGA2-209ENST00000539662 PTF1AQ7RTS3 328 aa14.71□□□□□ -0.05
HMGA2-209ENST00000539662 KNSTRNQ9Y448 316 aa14.71□□□□□ -0.05
HMGA2-209ENST00000539662 INSRP06213 1382 aa14.71□□□□□ -0.06
HMGA2-209ENST00000539662 FLT4P35916 1363 aa14.71□□□□□ -0.06
HMGA2-209ENST00000539662 TRIM37O94972 964 aa14.7□□□□□ -0.06
HMGA2-209ENST00000539662 SBF2Q86WG5 1849 aa14.69□□□□□ -0.06
HMGA2-209ENST00000539662 CC2D1BQ5T0F9 858 aaKnown RBP14.69□□□□□ -0.06
HMGA2-209ENST00000539662 MORC1Q86VD1 984 aa14.69□□□□□ -0.06
HMGA2-209ENST00000539662 MEGF6O75095 1541 aa14.69□□□□□ -0.06
HMGA2-209ENST00000539662 RGPD1P0DJD0 1748 aa14.69□□□□□ -0.06
HMGA2-209ENST00000539662 IL2RBP14784 551 aa14.68□□□□□ -0.06
HMGA2-209ENST00000539662 FAM196AQ6ZSG2 479 aa14.68□□□□□ -0.06
HMGA2-209ENST00000539662 SHANK3Q9BYB0 1731 aa14.68□□□□□ -0.06
HMGA2-209ENST00000539662 NSD2O96028 1365 aa14.68□□□□□ -0.06
HMGA2-209ENST00000539662 TNS2Q63HR2 1409 aa14.67□□□□□ -0.06
HMGA2-209ENST00000539662 EXOC5O00471 708 aa14.67□□□□□ -0.06
HMGA2-209ENST00000539662 CCDC125Q86Z20 511 aa14.67□□□□□ -0.06
HMGA2-209ENST00000539662 KIF24Q5T7B8 1368 aa14.67□□□□□ -0.06
HMGA2-209ENST00000539662 CDCA7Q9BWT1 371 aaPredicted RBP14.66□□□□□ -0.06
HMGA2-209ENST00000539662 SMG6Q86US8 1419 aaKnown RBP14.66□□□□□ -0.06
HMGA2-209ENST00000539662 EN1Q05925 392 aaPredicted RBP14.65□□□□□ -0.06
HMGA2-209ENST00000539662 EIF4A2Q14240 407 aaKnown RBP14.65□□□□□ -0.06
HMGA2-209ENST00000539662 OVOS2A0A0G2JMS6 1433 aa14.65□□□□□ -0.06
HMGA2-209ENST00000539662 EYA1Q99502 592 aa14.64□□□□□ -0.07
HMGA2-209ENST00000539662 KCNQ2O43526 872 aa14.63□□□□□ -0.07
HMGA2-209ENST00000539662 SF3B2Q13435 895 aaKnown RBP14.62□□□□□ -0.07
HMGA2-209ENST00000539662 NCAPD2Q15021 1401 aa14.62□□□□□ -0.07
HMGA2-209ENST00000539662 EZH2Q15910 746 aaKnown RBP14.62□□□□□ -0.07
HMGA2-209ENST00000539662 DDX54Q8TDD1 881 aaKnown RBP14.62□□□□□ -0.07
HMGA2-209ENST00000539662 ACSBG1Q96GR2 724 aa14.62□□□□□ -0.07
HMGA2-209ENST00000539662 APBA3O96018 575 aa14.61□□□□□ -0.07
HMGA2-209ENST00000539662 MTHFSP49914 203 aa14.61□□□□□ -0.07
HMGA2-209ENST00000539662 CAMKK2Q96RR4 588 aa14.61□□□□□ -0.07
HMGA2-209ENST00000539662 BAG6P46379 1132 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms