RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 DDX19BQ9UMR2 479 aa15.87■□□□□ 0.13
SFSWAP-208ENST00000539506 RRS1Q15050 365 aaKnown RBP15.86■□□□□ 0.13
SFSWAP-208ENST00000539506 NUDT16Q96DE0 195 aaKnown RBP15.86■□□□□ 0.13
SFSWAP-208ENST00000539506 ZMYM3Q14202 1370 aa15.86■□□□□ 0.13
SFSWAP-208ENST00000539506 TBC1D32Q96NH3 1257 aa15.86■□□□□ 0.13
SFSWAP-208ENST00000539506 EDC4Q6P2E9 1401 aaKnown RBP15.85■□□□□ 0.13
SFSWAP-208ENST00000539506 GOLGA6L3A6NEY3 463 aa15.85■□□□□ 0.13
SFSWAP-208ENST00000539506 NFE2L2Q16236 605 aa15.85■□□□□ 0.13
SFSWAP-208ENST00000539506 PNNQ9H307 717 aaKnown RBP15.85■□□□□ 0.13
SFSWAP-208ENST00000539506 PRR36Q9H6K5 1346 aa15.85■□□□□ 0.13
SFSWAP-208ENST00000539506 VAMP4O75379 141 aa15.84■□□□□ 0.13
SFSWAP-208ENST00000539506 ALDH1L2Q3SY69 923 aa15.83■□□□□ 0.13
SFSWAP-208ENST00000539506 SMC5Q8IY18 1101 aa15.83■□□□□ 0.13
SFSWAP-208ENST00000539506 ELL2O00472 640 aaPredicted RBP15.83■□□□□ 0.12
SFSWAP-208ENST00000539506 FAM83GA6ND36 823 aa15.82■□□□□ 0.12
SFSWAP-208ENST00000539506 MCM4P33991 863 aa15.82■□□□□ 0.12
SFSWAP-208ENST00000539506 KIF16BQ96L93 1317 aa15.82■□□□□ 0.12
SFSWAP-208ENST00000539506 ZNF853P0CG23 659 aa15.82■□□□□ 0.12
SFSWAP-208ENST00000539506 MBIPQ9NS73 344 aa15.82■□□□□ 0.12
SFSWAP-208ENST00000539506 CCDC61Q9Y6R9 512 aa15.82■□□□□ 0.12
SFSWAP-208ENST00000539506 TRAK2O60296 914 aa15.81■□□□□ 0.12
SFSWAP-208ENST00000539506 MRPL50Q8N5N7 158 aaKnown RBP15.81■□□□□ 0.12
SFSWAP-208ENST00000539506 C22orf23Q9BZE7 217 aa15.81■□□□□ 0.12
SFSWAP-208ENST00000539506 CDK12Q9NYV4 1490 aaPredicted RBP15.8■□□□□ 0.12
SFSWAP-208ENST00000539506 AATKQ6ZMQ8 1374 aa15.8■□□□□ 0.12
SFSWAP-208ENST00000539506 ROBO2Q9HCK4 1378 aa15.8■□□□□ 0.12
SFSWAP-208ENST00000539506 BRPF1P55201 1214 aaPredicted RBP15.8■□□□□ 0.12
SFSWAP-208ENST00000539506 DCTN1Q14203 1278 aa15.8■□□□□ 0.12
SFSWAP-208ENST00000539506 IPO8O15397 1037 aaKnown RBP15.8■□□□□ 0.12
SFSWAP-208ENST00000539506 L1TD1Q5T7N2 865 aaKnown RBP15.8■□□□□ 0.12
SFSWAP-208ENST00000539506 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.8■□□□□ 0.12
SFSWAP-208ENST00000539506 ZBTB7BO15156 539 aaPredicted RBP15.79■□□□□ 0.12
SFSWAP-208ENST00000539506 C8orf58Q8NAV2 365 aa15.79■□□□□ 0.12
SFSWAP-208ENST00000539506 TECPR2O15040 1411 aa15.79■□□□□ 0.12
SFSWAP-208ENST00000539506 COG3Q96JB2 828 aa15.79■□□□□ 0.12
SFSWAP-208ENST00000539506 C1orf115Q9H7X2 142 aa15.79■□□□□ 0.12
SFSWAP-208ENST00000539506 MON2Q7Z3U7 1717 aa15.78■□□□□ 0.12
SFSWAP-208ENST00000539506 NUCB1Q02818 461 aa15.78■□□□□ 0.12
SFSWAP-208ENST00000539506 AEBP1Q8IUX7 1158 aa15.78■□□□□ 0.12
SFSWAP-208ENST00000539506 IFT57Q9NWB7 429 aa15.78■□□□□ 0.12
SFSWAP-208ENST00000539506 NUTM2FA1L443 756 aa15.77■□□□□ 0.12
SFSWAP-208ENST00000539506 C3P01024 1663 aa15.77■□□□□ 0.12
SFSWAP-208ENST00000539506 LNPKQ9C0E8 428 aa15.77■□□□□ 0.11
SFSWAP-208ENST00000539506 DLG5Q8TDM6 1919 aa15.77■□□□□ 0.11
SFSWAP-208ENST00000539506 SIRT2Q8IXJ6 389 aa15.77■□□□□ 0.11
SFSWAP-208ENST00000539506 SIRT1Q96EB6 747 aa15.77■□□□□ 0.11
SFSWAP-208ENST00000539506 ADAMTS13Q76LX8 1427 aa15.76■□□□□ 0.11
SFSWAP-208ENST00000539506 TMEM2Q9UHN6 1383 aa15.76■□□□□ 0.11
SFSWAP-208ENST00000539506 LTKP29376 864 aa15.76■□□□□ 0.11
SFSWAP-208ENST00000539506 GNAI1P63096 354 aa15.76■□□□□ 0.11
SFSWAP-208ENST00000539506 KNDC1Q76NI1 1749 aa15.76■□□□□ 0.11
SFSWAP-208ENST00000539506 TNRQ92752 1358 aa15.75■□□□□ 0.11
SFSWAP-208ENST00000539506 PIK3R4Q99570 1358 aa15.75■□□□□ 0.11
SFSWAP-208ENST00000539506 VSIG10Q8N0Z9 540 aa15.75■□□□□ 0.11
SFSWAP-208ENST00000539506 CFAP44Q96MT7 982 aa15.75■□□□□ 0.11
SFSWAP-208ENST00000539506 ESF1Q9H501 851 aaKnown RBP15.75■□□□□ 0.11
SFSWAP-208ENST00000539506 PTCH1Q13635 1447 aa15.75■□□□□ 0.11
SFSWAP-208ENST00000539506 AKAP12Q02952 1782 aa15.75■□□□□ 0.11
SFSWAP-208ENST00000539506 KIF13AQ9H1H9 1805 aa15.75■□□□□ 0.11
SFSWAP-208ENST00000539506 TWISTNBQ3B726 338 aaPredicted RBP15.74■□□□□ 0.11
SFSWAP-208ENST00000539506 ZNF428Q96B54 188 aa15.74■□□□□ 0.11
SFSWAP-208ENST00000539506 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.74■□□□□ 0.11
SFSWAP-208ENST00000539506 EIF4A2Q14240 407 aaKnown RBP15.74■□□□□ 0.11
SFSWAP-208ENST00000539506 KRT24Q2M2I5 525 aa15.74■□□□□ 0.11
SFSWAP-208ENST00000539506 CHD1LQ86WJ1 897 aa15.74■□□□□ 0.11
SFSWAP-208ENST00000539506 ARHGAP45Q92619 1136 aa15.73■□□□□ 0.11
SFSWAP-208ENST00000539506 RBM42Q9BTD8 480 aaKnown RBP15.73■□□□□ 0.11
SFSWAP-208ENST00000539506 ABCC4O15439 1325 aa15.73■□□□□ 0.11
SFSWAP-208ENST00000539506 UBR1Q8IWV7 1749 aa15.73■□□□□ 0.11
SFSWAP-208ENST00000539506 HSP90AA1P07900 732 aaKnown RBP15.72■□□□□ 0.11
SFSWAP-208ENST00000539506 ACEP12821 1306 aa15.72■□□□□ 0.11
SFSWAP-208ENST00000539506 GAS2L3Q86XJ1 694 aa15.72■□□□□ 0.11
SFSWAP-208ENST00000539506 ZNF692Q9BU19 519 aaPredicted RBP15.72■□□□□ 0.11
SFSWAP-208ENST00000539506 ERBB4Q15303 1308 aa15.72■□□□□ 0.11
SFSWAP-208ENST00000539506 TTC21BQ7Z4L5 1316 aa15.72■□□□□ 0.11
SFSWAP-208ENST00000539506 SULT6B1Q6IMI4 303 aa15.72■□□□□ 0.11
SFSWAP-208ENST00000539506 HSCBQ8IWL3 235 aa15.72■□□□□ 0.11
SFSWAP-208ENST00000539506 CHMP5Q9NZZ3 219 aa15.72■□□□□ 0.11
SFSWAP-208ENST00000539506 CEBPAP49715 358 aaPredicted RBP15.71■□□□□ 0.11
SFSWAP-208ENST00000539506 CALD1Q05682 793 aaKnown RBP15.71■□□□□ 0.11
SFSWAP-208ENST00000539506 HSP90AB2PQ58FF8 381 aa15.71■□□□□ 0.11
SFSWAP-208ENST00000539506 PTPRUQ92729 1446 aa15.7■□□□□ 0.1
SFSWAP-208ENST00000539506 ITSN1Q15811 1721 aa15.7■□□□□ 0.1
SFSWAP-208ENST00000539506 ANKRD45Q5TZF3 282 aa15.7■□□□□ 0.1
SFSWAP-208ENST00000539506 SLC26A8Q96RN1 970 aa15.7■□□□□ 0.1
SFSWAP-208ENST00000539506 HDGFP51858 240 aaKnown RBP15.7■□□□□ 0.1
SFSWAP-208ENST00000539506 NRKQ7Z2Y5 1582 aa15.69■□□□□ 0.1
SFSWAP-208ENST00000539506 CD2BP2O95400 341 aaKnown RBP15.69■□□□□ 0.1
SFSWAP-208ENST00000539506 MCM10Q7L590 875 aa15.69■□□□□ 0.1
SFSWAP-208ENST00000539506 GRPEL1Q9HAV7 217 aa15.69■□□□□ 0.1
SFSWAP-208ENST00000539506 PEAK1Q9H792 1746 aa15.69■□□□□ 0.1
SFSWAP-208ENST00000539506 ZBTB7CA1YPR0 619 aa15.69■□□□□ 0.1
SFSWAP-208ENST00000539506 HSP90AB1P08238 724 aaKnown RBP15.69■□□□□ 0.1
SFSWAP-208ENST00000539506 OVOS2A0A0J9YW53 1432 aa15.69■□□□□ 0.1
SFSWAP-208ENST00000539506 OVOS2Q6IE36 1432 aa15.69■□□□□ 0.1
SFSWAP-208ENST00000539506 FSD2A1L4K1 749 aa15.68■□□□□ 0.1
SFSWAP-208ENST00000539506 SOX12O15370 315 aa15.68■□□□□ 0.1
SFSWAP-208ENST00000539506 ARID3AQ99856 593 aa15.68■□□□□ 0.1
SFSWAP-208ENST00000539506 PLEKHG3A1L390 1219 aa15.68■□□□□ 0.1
SFSWAP-208ENST00000539506 TNPO1Q92973 898 aaKnown RBP15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms