RNA–Protein interactions for RNA: ENST00000535810.1

CHD4-204, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 607 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-204ENST00000535810 SPDYE4A6NLX3 237 aa12.48□□□□□ -0.41
CHD4-204ENST00000535810 FAM98CQ17RN3 349 aaKnown RBP12.48□□□□□ -0.41
CHD4-204ENST00000535810 TTC21AQ8NDW8 1320 aa12.47□□□□□ -0.41
CHD4-204ENST00000535810 PUS7Q96PZ0 661 aaKnown RBP12.47□□□□□ -0.41
CHD4-204ENST00000535810 STRN4Q9NRL3 753 aa12.47□□□□□ -0.41
CHD4-204ENST00000535810 THSD7AQ9UPZ6 1657 aa12.47□□□□□ -0.41
CHD4-204ENST00000535810 SPATA31A1Q5TZJ5 1347 aa12.46□□□□□ -0.41
CHD4-204ENST00000535810 TMC1Q8TDI8 760 aa12.46□□□□□ -0.41
CHD4-204ENST00000535810 SLC12A5Q9H2X9 1139 aa12.46□□□□□ -0.41
CHD4-204ENST00000535810 COL5A2P05997 1499 aaPredicted RBP12.46□□□□□ -0.42
CHD4-204ENST00000535810 A0A1W2PP64 1363 aa12.45□□□□□ -0.42
CHD4-204ENST00000535810 NINLQ9Y2I6 1382 aa12.45□□□□□ -0.42
CHD4-204ENST00000535810 A0A0G2JS52 829 aa12.45□□□□□ -0.42
CHD4-204ENST00000535810 PSDA5PKW4 1024 aaPredicted RBP12.45□□□□□ -0.42
CHD4-204ENST00000535810 MYT1Q01538 1121 aa12.45□□□□□ -0.42
CHD4-204ENST00000535810 KRT27Q7Z3Y8 459 aa12.45□□□□□ -0.42
CHD4-204ENST00000535810 AATKQ6ZMQ8 1374 aa12.44□□□□□ -0.42
CHD4-204ENST00000535810 NFAT5O94916 1531 aa12.44□□□□□ -0.42
CHD4-204ENST00000535810 SLC24A1O60721 1099 aa12.44□□□□□ -0.42
CHD4-204ENST00000535810 YY1P25490 414 aa12.44□□□□□ -0.42
CHD4-204ENST00000535810 LARP1Q6PKG0 1096 aaKnown RBP12.44□□□□□ -0.42
CHD4-204ENST00000535810 EDC4Q6P2E9 1401 aaKnown RBP12.44□□□□□ -0.42
CHD4-204ENST00000535810 USP31Q70CQ4 1352 aa12.43□□□□□ -0.42
CHD4-204ENST00000535810 USP54Q70EL1 1684 aa12.43□□□□□ -0.42
CHD4-204ENST00000535810 BAG6P46379 1132 aa12.43□□□□□ -0.42
CHD4-204ENST00000535810 EVA1CP58658 441 aa12.43□□□□□ -0.42
CHD4-204ENST00000535810 HDGFL2Q7Z4V5 671 aaPredicted RBP12.43□□□□□ -0.42
CHD4-204ENST00000535810 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.43□□□□□ -0.42
CHD4-204ENST00000535810 CCER1Q8TC90 406 aaPredicted RBP12.43□□□□□ -0.42
CHD4-204ENST00000535810 TERF2IPQ9NYB0 399 aa12.43□□□□□ -0.42
CHD4-204ENST00000535810 ZBTB7CA1YPR0 619 aa12.42□□□□□ -0.42
CHD4-204ENST00000535810 ARHGEF25Q86VW2 580 aa12.42□□□□□ -0.42
CHD4-204ENST00000535810 NME9Q86XW9 330 aa12.42□□□□□ -0.42
CHD4-204ENST00000535810 KCNH5Q8NCM2 988 aa12.42□□□□□ -0.42
CHD4-204ENST00000535810 USP35Q9P2H5 1018 aa12.42□□□□□ -0.42
CHD4-204ENST00000535810 ZBTB12Q9Y330 459 aaPredicted RBP12.42□□□□□ -0.42
CHD4-204ENST00000535810 COL18A1P39060 1754 aa12.42□□□□□ -0.42
CHD4-204ENST00000535810 SOX12O15370 315 aa12.41□□□□□ -0.42
CHD4-204ENST00000535810 TMF1P82094 1093 aa12.41□□□□□ -0.42
CHD4-204ENST00000535810 CRB1P82279 1406 aa12.41□□□□□ -0.42
CHD4-204ENST00000535810 BARGINQ6ZT62 677 aa12.41□□□□□ -0.42
CHD4-204ENST00000535810 TCP11L2Q8N4U5 519 aa12.41□□□□□ -0.42
CHD4-204ENST00000535810 OVOS2A0A0J9YW53 1432 aa12.4□□□□□ -0.42
CHD4-204ENST00000535810 OVOS2Q6IE36 1432 aa12.4□□□□□ -0.42
CHD4-204ENST00000535810 AXIN2Q9Y2T1 843 aa12.4□□□□□ -0.42
CHD4-204ENST00000535810 ABCC6O95255 1503 aa12.4□□□□□ -0.42
CHD4-204ENST00000535810 ANKRD36BQ8N2N9 1353 aa12.39□□□□□ -0.43
CHD4-204ENST00000535810 FAM182BQ5T319 152 aa12.38□□□□□ -0.43
CHD4-204ENST00000535810 THRAP3Q9Y2W1 955 aaKnown RBP12.38□□□□□ -0.43
CHD4-204ENST00000535810 WDR17Q8IZU2 1322 aa12.37□□□□□ -0.43
CHD4-204ENST00000535810 R3HDM1Q15032 1099 aaKnown RBP12.37□□□□□ -0.43
CHD4-204ENST00000535810 CDCA8Q53HL2 280 aa12.37□□□□□ -0.43
CHD4-204ENST00000535810 PARP4Q9UKK3 1724 aaKnown RBP12.37□□□□□ -0.43
CHD4-204ENST00000535810 TOM1L2Q6ZVM7 507 aa12.36□□□□□ -0.43
CHD4-204ENST00000535810 RGPD5Q99666 1765 aa12.35□□□□□ -0.43
CHD4-204ENST00000535810 MYOM1P52179 1685 aa12.35□□□□□ -0.43
CHD4-204ENST00000535810 LRRC37A3O60309 1634 aa12.35□□□□□ -0.43
CHD4-204ENST00000535810 LTN1O94822 1766 aa12.35□□□□□ -0.43
CHD4-204ENST00000535810 RGPD1P0DJD0 1748 aa12.34□□□□□ -0.43
CHD4-204ENST00000535810 EN1Q05925 392 aaPredicted RBP12.34□□□□□ -0.43
CHD4-204ENST00000535810 PDE3BQ13370 1112 aa12.34□□□□□ -0.43
CHD4-204ENST00000535810 FAM196AQ6ZSG2 479 aa12.34□□□□□ -0.43
CHD4-204ENST00000535810 WNK3Q9BYP7 1800 aa12.34□□□□□ -0.43
CHD4-204ENST00000535810 ERBB3P21860 1342 aa12.34□□□□□ -0.43
CHD4-204ENST00000535810 TNS1Q9HBL0 1735 aaKnown RBP12.34□□□□□ -0.43
CHD4-204ENST00000535810 CSB-PGBD3P0DP91 1061 aa12.33□□□□□ -0.44
CHD4-204ENST00000535810 CARD10Q9BWT7 1032 aa12.33□□□□□ -0.44
CHD4-204ENST00000535810 DISP2A7MBM2 1401 aa12.33□□□□□ -0.44
CHD4-204ENST00000535810 IFFO2Q5TF58 517 aa12.32□□□□□ -0.44
CHD4-204ENST00000535810 COG3Q96JB2 828 aa12.32□□□□□ -0.44
CHD4-204ENST00000535810 UTRNP46939 3433 aa12.31□□□□□ -0.44
CHD4-204ENST00000535810 FYB1O15117 783 aa12.31□□□□□ -0.44
CHD4-204ENST00000535810 CDCA7Q9BWT1 371 aaPredicted RBP12.31□□□□□ -0.44
CHD4-204ENST00000535810 PEAK1Q9H792 1746 aa12.31□□□□□ -0.44
CHD4-204ENST00000535810 CCDC7Q96M83 1385 aa12.3□□□□□ -0.44
CHD4-204ENST00000535810 OVOS2A0A0G2JMS6 1433 aa12.3□□□□□ -0.44
CHD4-204ENST00000535810 TRIM37O94972 964 aa12.3□□□□□ -0.44
CHD4-204ENST00000535810 HSPA5P11021 654 aaKnown RBP12.3□□□□□ -0.44
CHD4-204ENST00000535810 EIF4G2P78344 907 aaKnown RBP eCLIP12.3□□□□□ -0.44
CHD4-204ENST00000535810 DDB1Q16531 1140 aa12.3□□□□□ -0.44
CHD4-204ENST00000535810 MAP3K19Q56UN5 1328 aa12.3□□□□□ -0.44
CHD4-204ENST00000535810 NSD3Q9BZ95 1437 aa12.29□□□□□ -0.44
CHD4-204ENST00000535810 ANKRD24Q8TF21 1146 aa12.29□□□□□ -0.44
CHD4-204ENST00000535810 IP6K1Q92551 441 aa12.29□□□□□ -0.44
CHD4-204ENST00000535810 CARD14Q9BXL6 1004 aa12.29□□□□□ -0.44
CHD4-204ENST00000535810 GGNBP2Q9H3C7 697 aa12.29□□□□□ -0.44
CHD4-204ENST00000535810 KIF20BQ96Q89 1820 aa12.29□□□□□ -0.44
CHD4-204ENST00000535810 FBLN1P23142 703 aa12.28□□□□□ -0.44
CHD4-204ENST00000535810 NLRP2Q9NX02 1062 aa12.28□□□□□ -0.44
CHD4-204ENST00000535810 RTL1A6NKG5 1358 aa12.28□□□□□ -0.44
CHD4-204ENST00000535810 TNS2Q63HR2 1409 aa12.28□□□□□ -0.44
CHD4-204ENST00000535810 C11orf95C9JLR9 678 aaPredicted RBP12.27□□□□□ -0.45
CHD4-204ENST00000535810 HOXC9P31274 260 aa12.27□□□□□ -0.45
CHD4-204ENST00000535810 CAMKK2Q96RR4 588 aa12.27□□□□□ -0.45
CHD4-204ENST00000535810 BCL9O00512 1426 aa12.27□□□□□ -0.45
CHD4-204ENST00000535810 APBA3O96018 575 aa12.26□□□□□ -0.45
CHD4-204ENST00000535810 RRS1Q15050 365 aaKnown RBP12.26□□□□□ -0.45
CHD4-204ENST00000535810 EZH2Q15910 746 aaKnown RBP12.26□□□□□ -0.45
CHD4-204ENST00000535810 MARCH10Q8NA82 808 aaPredicted RBP12.26□□□□□ -0.45
CHD4-204ENST00000535810 PARD3Q8TEW0 1356 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 101.6 ms