RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	UBTF	P17480	764 aa	Known RBP	5.95	□□□□□ -1.46
CD44-238	ENST00000534296	WDR4	P57081	412 aa	Known RBP	5.95	□□□□□ -1.46
CD44-238	ENST00000534296	CCDC125	Q86Z20	511 aa		5.95	□□□□□ -1.46
CD44-238	ENST00000534296	CCDC116	Q8IYX3	515 aa		5.95	□□□□□ -1.46
CD44-238	ENST00000534296	KCTD15	Q96SI1	283 aa	Predicted RBP	5.95	□□□□□ -1.46
CD44-238	ENST00000534296	AAAS	Q9NRG9	546 aa		5.95	□□□□□ -1.46
CD44-238	ENST00000534296	ST8SIA5	O15466	376 aa		5.94	□□□□□ -1.46
CD44-238	ENST00000534296	FBXO45	P0C2W1	286 aa		5.94	□□□□□ -1.46
CD44-238	ENST00000534296	ABL2	P42684	1182 aa		5.94	□□□□□ -1.46
CD44-238	ENST00000534296	EIF4G2	P78344	907 aa	Known RBP eCLIP	5.94	□□□□□ -1.46
CD44-238	ENST00000534296	WASHC4	Q2M389	1173 aa		5.94	□□□□□ -1.46
CD44-238	ENST00000534296	RNF20	Q5VTR2	975 aa		5.94	□□□□□ -1.46
CD44-238	ENST00000534296	SEPT12	Q8IYM1	358 aa		5.94	□□□□□ -1.46
CD44-238	ENST00000534296	SENP2	Q9HC62	589 aa		5.94	□□□□□ -1.46
CD44-238	ENST00000534296	TBC1D2B	Q9UPU7	963 aa		5.94	□□□□□ -1.46
CD44-238	ENST00000534296	LCE2B	O14633	110 aa		5.93	□□□□□ -1.46
CD44-238	ENST00000534296	SCARF1	Q14162	830 aa		5.93	□□□□□ -1.46
CD44-238	ENST00000534296	ZIC2	O95409	532 aa	Predicted RBP	5.92	□□□□□ -1.46
CD44-238	ENST00000534296	GRM5	P41594	1212 aa		5.92	□□□□□ -1.46
CD44-238	ENST00000534296	KIFC2	Q96AC6	838 aa		5.92	□□□□□ -1.46
CD44-238	ENST00000534296	ESF1	Q9H501	851 aa	Known RBP	5.92	□□□□□ -1.46
CD44-238	ENST00000534296	GDPD2	Q9HCC8	539 aa		5.92	□□□□□ -1.46
CD44-238	ENST00000534296	TIMP2	P16035	220 aa		5.91	□□□□□ -1.46
CD44-238	ENST00000534296	SOX11	P35716	441 aa		5.91	□□□□□ -1.46
CD44-238	ENST00000534296	RAB15	P59190	212 aa		5.91	□□□□□ -1.46
CD44-238	ENST00000534296	ZNF787	Q6DD87	383 aa		5.91	□□□□□ -1.46
CD44-238	ENST00000534296	OCSTAMP	Q9BR26	566 aa		5.91	□□□□□ -1.46
CD44-238	ENST00000534296	ATP13A2	Q9NQ11	1180 aa		5.91	□□□□□ -1.46
CD44-238	ENST00000534296	NR3C2	P08235	984 aa		5.9	□□□□□ -1.46
CD44-238	ENST00000534296	INTS6L	Q5JSJ4	861 aa	Known RBP	5.9	□□□□□ -1.46
CD44-238	ENST00000534296	PPP1R26	Q5T8A7	1209 aa	Predicted RBP	5.9	□□□□□ -1.46
CD44-238	ENST00000534296	ITPKC	Q96DU7	683 aa		5.9	□□□□□ -1.46
CD44-238	ENST00000534296	SEMA3F	Q13275	785 aa		5.89	□□□□□ -1.47
CD44-238	ENST00000534296	COG6	Q9Y2V7	657 aa		5.89	□□□□□ -1.47
CD44-238	ENST00000534296	ESPN	B1AK53	854 aa		5.88	□□□□□ -1.47
CD44-238	ENST00000534296	C11orf95	C9JLR9	678 aa	Predicted RBP	5.88	□□□□□ -1.47
CD44-238	ENST00000534296	MRPL14	Q6P1L8	145 aa	Known RBP	5.88	□□□□□ -1.47
CD44-238	ENST00000534296	TSEN34	Q9BSV6	310 aa	Known RBP	5.88	□□□□□ -1.47
CD44-238	ENST00000534296	ZFAND3	Q9H8U3	227 aa		5.88	□□□□□ -1.47
CD44-238	ENST00000534296	GPR37L1	O60883	481 aa		5.87	□□□□□ -1.47
CD44-238	ENST00000534296	BMP2	P12643	396 aa		5.87	□□□□□ -1.47
CD44-238	ENST00000534296	BMP1	P13497	986 aa		5.87	□□□□□ -1.47
CD44-238	ENST00000534296	VAC14	Q08AM6	782 aa		5.87	□□□□□ -1.47
CD44-238	ENST00000534296	SLFNL1	Q499Z3	407 aa		5.87	□□□□□ -1.47
CD44-238	ENST00000534296	MEIOB	Q8N635	442 aa		5.87	□□□□□ -1.47
CD44-238	ENST00000534296	ERVH48-1	M5A8F1	160 aa		5.86	□□□□□ -1.47
CD44-238	ENST00000534296	GIGYF1	O75420	1035 aa	Predicted RBP	5.86	□□□□□ -1.47
CD44-238	ENST00000534296	IRF5	Q13568	498 aa		5.86	□□□□□ -1.47
CD44-238	ENST00000534296	LINC00528	Q8N1L1	170 aa		5.86	□□□□□ -1.47
CD44-238	ENST00000534296	TRIM47	Q96LD4	638 aa		5.86	□□□□□ -1.47
CD44-238	ENST00000534296	KLF16	Q9BXK1	252 aa	Predicted RBP	5.86	□□□□□ -1.47
CD44-238	ENST00000534296	GMPR2	Q9P2T1	348 aa	Known RBP	5.86	□□□□□ -1.47
CD44-238	ENST00000534296	MYC	P01106	439 aa	Predicted RBP	5.85	□□□□□ -1.47
CD44-238	ENST00000534296	C6orf118	Q5T5N4	469 aa		5.85	□□□□□ -1.47
CD44-238	ENST00000534296	RNF135	Q8IUD6	432 aa		5.85	□□□□□ -1.47
CD44-238	ENST00000534296	ZNF784	Q8NCA9	323 aa	Predicted RBP	5.85	□□□□□ -1.47
CD44-238	ENST00000534296	PURB	Q96QR8	312 aa	Known RBP	5.85	□□□□□ -1.47
CD44-238	ENST00000534296	PCDHB11	Q9Y5F2	797 aa		5.85	□□□□□ -1.47
CD44-238	ENST00000534296	SIRT1	Q96EB6	747 aa		5.84	□□□□□ -1.47
CD44-238	ENST00000534296	CYLD	Q9NQC7	956 aa		5.84	□□□□□ -1.47
CD44-238	ENST00000534296	CEP126	Q9P2H0	1117 aa		5.84	□□□□□ -1.47
CD44-238	ENST00000534296	DACH1	Q9UI36	760 aa		5.84	□□□□□ -1.47
CD44-238	ENST00000534296	ADH1A	P07327	375 aa		5.83	□□□□□ -1.48
CD44-238	ENST00000534296	CC2D2B	Q6DHV5	1058 aa		5.83	□□□□□ -1.48
CD44-238	ENST00000534296		Q6ZVU0	165 aa		5.83	□□□□□ -1.48
CD44-238	ENST00000534296	CYP2U1	Q7Z449	544 aa		5.83	□□□□□ -1.48
CD44-238	ENST00000534296	TRIM46	Q7Z4K8	759 aa		5.83	□□□□□ -1.48
CD44-238	ENST00000534296	PROSER2	Q86WR7	435 aa	Predicted RBP	5.83	□□□□□ -1.48
CD44-238	ENST00000534296	POM121	Q96HA1	1249 aa		5.83	□□□□□ -1.48
CD44-238	ENST00000534296	ZFP42	Q96MM3	310 aa		5.83	□□□□□ -1.48
CD44-238	ENST00000534296	TMPRSS4	Q9NRS4	437 aa		5.83	□□□□□ -1.48
CD44-238	ENST00000534296	DOLK	Q9UPQ8	538 aa		5.83	□□□□□ -1.48
CD44-238	ENST00000534296	MAN1A2	O60476	641 aa		5.82	□□□□□ -1.48
CD44-238	ENST00000534296	CBLB	Q13191	982 aa		5.82	□□□□□ -1.48
CD44-238	ENST00000534296	MAP7D1	Q3KQU3	841 aa		5.82	□□□□□ -1.48
CD44-238	ENST00000534296	ATP5J2-PTCD1	G3V325	749 aa		5.81	□□□□□ -1.48
CD44-238	ENST00000534296	ERVK-9	P63128	1117 aa		5.81	□□□□□ -1.48
CD44-238	ENST00000534296	RELB	Q01201	579 aa		5.81	□□□□□ -1.48
CD44-238	ENST00000534296	POLM	Q9NP87	494 aa	Predicted RBP	5.81	□□□□□ -1.48
CD44-238	ENST00000534296		A6NJR5	290 aa		5.8	□□□□□ -1.48
CD44-238	ENST00000534296	TTLL8	A6PVC2	850 aa		5.8	□□□□□ -1.48
CD44-238	ENST00000534296	SPINT1	O43278	529 aa		5.8	□□□□□ -1.48
CD44-238	ENST00000534296	USP4	Q13107	963 aa		5.8	□□□□□ -1.48
CD44-238	ENST00000534296	CLUAP1	Q96AJ1	413 aa		5.8	□□□□□ -1.48
CD44-238	ENST00000534296	POTEC	B2RU33	542 aa		5.79	□□□□□ -1.48
CD44-238	ENST00000534296	LILRA1	O75019	489 aa		5.79	□□□□□ -1.48
CD44-238	ENST00000534296	SNRPB	P14678	240 aa	Known RBP	5.79	□□□□□ -1.48
CD44-238	ENST00000534296	PTGIR	P43119	386 aa		5.79	□□□□□ -1.48
CD44-238	ENST00000534296	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	5.79	□□□□□ -1.48
CD44-238	ENST00000534296	OXLD1	Q5BKU9	147 aa		5.79	□□□□□ -1.48
CD44-238	ENST00000534296	NFATC2IP	Q8NCF5	419 aa		5.79	□□□□□ -1.48
CD44-238	ENST00000534296	ZNF775	Q96BV0	537 aa	Predicted RBP	5.79	□□□□□ -1.48
CD44-238	ENST00000534296	AGBL1	Q96MI9	1066 aa		5.79	□□□□□ -1.48
CD44-238	ENST00000534296	NLRP3	Q96P20	1036 aa		5.79	□□□□□ -1.48
CD44-238	ENST00000534296	LZTS3	O60299	673 aa	Predicted RBP	5.78	□□□□□ -1.48
CD44-238	ENST00000534296	GTF2E1	P29083	439 aa	Predicted RBP	5.78	□□□□□ -1.48
CD44-238	ENST00000534296	ESCO1	Q5FWF5	840 aa		5.78	□□□□□ -1.48
CD44-238	ENST00000534296	PLPP7	Q8NBV4	271 aa		5.78	□□□□□ -1.48
CD44-238	ENST00000534296	SLC16A10	Q8TF71	515 aa		5.78	□□□□□ -1.48
CD44-238	ENST00000534296	MEN1	O00255	615 aa		5.77	□□□□□ -1.49

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