RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 TRMT44Q8IYL2 757 aaKnown RBP8.11□□□□□ -1.11
CD44-236ENST00000533222 FAM174AQ8TBP5 190 aa8.11□□□□□ -1.11
CD44-236ENST00000533222 ARID5BQ14865 1188 aa8.1□□□□□ -1.11
CD44-236ENST00000533222 ARID3AQ99856 593 aa8.1□□□□□ -1.11
CD44-236ENST00000533222 GIGYF1O75420 1035 aaPredicted RBP8.09□□□□□ -1.11
CD44-236ENST00000533222 SOX11P35716 441 aa8.09□□□□□ -1.11
CD44-236ENST00000533222 RAB15P59190 212 aa8.09□□□□□ -1.11
CD44-236ENST00000533222 CEP126Q9P2H0 1117 aa8.09□□□□□ -1.11
CD44-236ENST00000533222 FSHRP23945 695 aa8.08□□□□□ -1.12
CD44-236ENST00000533222 VASH1Q7L8A9 365 aaPredicted RBP8.08□□□□□ -1.12
CD44-236ENST00000533222 J3QL48 77 aa8.07□□□□□ -1.12
CD44-236ENST00000533222 TSGA10IPQ3SY00 556 aa8.07□□□□□ -1.12
CD44-236ENST00000533222 TBC1D9Q6ZT07 1266 aa8.07□□□□□ -1.12
CD44-236ENST00000533222 KCTD15Q96SI1 283 aaPredicted RBP8.07□□□□□ -1.12
CD44-236ENST00000533222 PODXL2Q9NZ53 605 aa8.07□□□□□ -1.12
CD44-236ENST00000533222 ALDH1A1P00352 501 aa8.06□□□□□ -1.12
CD44-236ENST00000533222 NR3C2P08235 984 aa8.06□□□□□ -1.12
CD44-236ENST00000533222 GRM5P41594 1212 aa8.06□□□□□ -1.12
CD44-236ENST00000533222 INTS6LQ5JSJ4 861 aaKnown RBP8.06□□□□□ -1.12
CD44-236ENST00000533222 PHTF2Q8N3S3 785 aa8.06□□□□□ -1.12
CD44-236ENST00000533222 CCDC85AQ96PX6 553 aaPredicted RBP8.06□□□□□ -1.12
CD44-236ENST00000533222 CDK15Q96Q40 435 aa8.06□□□□□ -1.12
CD44-236ENST00000533222 MAP4K5Q9Y4K4 846 aa8.06□□□□□ -1.12
CD44-236ENST00000533222 ESPNB1AK53 854 aa8.05□□□□□ -1.12
CD44-236ENST00000533222 NBPF20Q3BBV1 942 aa8.05□□□□□ -1.12
CD44-236ENST00000533222 ADH1CP00326 375 aa8.04□□□□□ -1.12
CD44-236ENST00000533222 NEFLP07196 543 aa8.04□□□□□ -1.12
CD44-236ENST00000533222 CFAP70Q5T0N1 1121 aa8.04□□□□□ -1.12
CD44-236ENST00000533222 RNF135Q8IUD6 432 aa8.04□□□□□ -1.12
CD44-236ENST00000533222 CCDC97Q96F63 343 aaPredicted RBP8.04□□□□□ -1.12
CD44-236ENST00000533222 TOR4AQ9NXH8 423 aa8.04□□□□□ -1.12
CD44-236ENST00000533222 PALM3A6NDB9 673 aaPredicted RBP8.03□□□□□ -1.12
CD44-236ENST00000533222 RGS20O76081 388 aa8.03□□□□□ -1.12
CD44-236ENST00000533222 SKIP12755 728 aa8.03□□□□□ -1.12
CD44-236ENST00000533222 PRR20EP86478 221 aa8.03□□□□□ -1.12
CD44-236ENST00000533222 PRR20CP86479 221 aa8.03□□□□□ -1.12
CD44-236ENST00000533222 PRR20DP86480 221 aa8.03□□□□□ -1.12
CD44-236ENST00000533222 PRR20BP86481 221 aa8.03□□□□□ -1.12
CD44-236ENST00000533222 PRR20AP86496 221 aa8.03□□□□□ -1.12
CD44-236ENST00000533222 SLFNL1Q499Z3 407 aa8.03□□□□□ -1.12
CD44-236ENST00000533222 CYP4X1Q8N118 509 aa8.03□□□□□ -1.12
CD44-236ENST00000533222 DEPDC4Q8N2C3 294 aa8.03□□□□□ -1.12
CD44-236ENST00000533222 SNIP1Q8TAD8 396 aaKnown RBP8.03□□□□□ -1.12
CD44-236ENST00000533222 CDCA7Q9BWT1 371 aaPredicted RBP8.03□□□□□ -1.12
CD44-236ENST00000533222 PPP1R12CQ9BZL4 782 aa8.03□□□□□ -1.12
CD44-236ENST00000533222 TMPRSS4Q9NRS4 437 aa8.03□□□□□ -1.12
CD44-236ENST00000533222 TFIP11Q9UBB9 837 aaKnown RBP8.03□□□□□ -1.12
CD44-236ENST00000533222 TTC24A2A3L6 582 aaPredicted RBP8.02□□□□□ -1.13
CD44-236ENST00000533222 SMPD1P17405 629 aa8.02□□□□□ -1.13
CD44-236ENST00000533222 CDV3Q9UKY7 258 aaKnown RBP8.02□□□□□ -1.13
CD44-236ENST00000533222 PDZRN3Q9UPQ7 1066 aa8.02□□□□□ -1.13
CD44-236ENST00000533222 MAFBQ9Y5Q3 323 aaPredicted RBP8.02□□□□□ -1.13
CD44-236ENST00000533222 USP17L5A8MUK1 530 aa8.01□□□□□ -1.13
CD44-236ENST00000533222 ERVH48-1M5A8F1 160 aa8.01□□□□□ -1.13
CD44-236ENST00000533222 RFX1P22670 979 aa8.01□□□□□ -1.13
CD44-236ENST00000533222 MCCD1P59942 119 aaPredicted RBP8.01□□□□□ -1.13
CD44-236ENST00000533222 NNTQ13423 1086 aa8.01□□□□□ -1.13
CD44-236ENST00000533222 MPNDQ8N594 471 aa8.01□□□□□ -1.13
CD44-236ENST00000533222 PLPP7Q8NBV4 271 aa8.01□□□□□ -1.13
CD44-236ENST00000533222 PCDHB11Q9Y5F2 797 aa8.01□□□□□ -1.13
CD44-236ENST00000533222 ATP9BO43861 1147 aa8□□□□□ -1.13
CD44-236ENST00000533222 SCTRP47872 440 aa8□□□□□ -1.13
CD44-236ENST00000533222 TRAF7Q6Q0C0 670 aa8□□□□□ -1.13
CD44-236ENST00000533222 SERPINA10Q9UK55 444 aa8□□□□□ -1.13
CD44-236ENST00000533222 CHIC2Q9UKJ5 165 aa8□□□□□ -1.13
CD44-236ENST00000533222 WASF2Q9Y6W5 498 aa8□□□□□ -1.13
CD44-236ENST00000533222 USP17L3A6NCW0 530 aa7.99□□□□□ -1.13
CD44-236ENST00000533222 USP17L4A6NCW7 530 aa7.99□□□□□ -1.13
CD44-236ENST00000533222 LMOD1P29536 600 aaPredicted RBP7.99□□□□□ -1.13
CD44-236ENST00000533222 OXLD1Q5BKU9 147 aa7.99□□□□□ -1.13
CD44-236ENST00000533222 PPP1R26Q5T8A7 1209 aaPredicted RBP7.99□□□□□ -1.13
CD44-236ENST00000533222 USP17L2Q6R6M4 530 aa7.99□□□□□ -1.13
CD44-236ENST00000533222 USP17L1Q7RTZ2 530 aa7.99□□□□□ -1.13
CD44-236ENST00000533222 CCDC116Q8IYX3 515 aa7.99□□□□□ -1.13
CD44-236ENST00000533222 ZNF592Q92610 1267 aa7.99□□□□□ -1.13
CD44-236ENST00000533222 HPS1Q92902 700 aa7.99□□□□□ -1.13
CD44-236ENST00000533222 PKNOX2Q96KN3 472 aa7.99□□□□□ -1.13
CD44-236ENST00000533222 CYLDQ9NQC7 956 aa7.99□□□□□ -1.13
CD44-236ENST00000533222 DOLKQ9UPQ8 538 aa7.99□□□□□ -1.13
CD44-236ENST00000533222 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.98□□□□□ -1.13
CD44-236ENST00000533222 NR5A1Q13285 461 aa7.98□□□□□ -1.13
CD44-236ENST00000533222 NCOA4Q13772 614 aa7.98□□□□□ -1.13
CD44-236ENST00000533222 ZNF784Q8NCA9 323 aaPredicted RBP7.98□□□□□ -1.13
CD44-236ENST00000533222 FAM187AA6NFU0 413 aa7.97□□□□□ -1.13
CD44-236ENST00000533222 CDCA8Q53HL2 280 aa7.97□□□□□ -1.13
CD44-236ENST00000533222 SEPT12Q8IYM1 358 aa7.97□□□□□ -1.13
CD44-236ENST00000533222 NFATC2IPQ8NCF5 419 aa7.97□□□□□ -1.13
CD44-236ENST00000533222 ZFAND3Q9H8U3 227 aa7.97□□□□□ -1.13
CD44-236ENST00000533222 RNF20Q5VTR2 975 aa7.96□□□□□ -1.14
CD44-236ENST00000533222 ITPKCQ96DU7 683 aa7.96□□□□□ -1.14
CD44-236ENST00000533222 KLF16Q9BXK1 252 aaPredicted RBP7.96□□□□□ -1.14
CD44-236ENST00000533222 GFRA3O60609 400 aa7.95□□□□□ -1.14
CD44-236ENST00000533222 LILRA1O75019 489 aa7.95□□□□□ -1.14
CD44-236ENST00000533222 TIMP2P16035 220 aa7.95□□□□□ -1.14
CD44-236ENST00000533222 WDR4P57081 412 aaKnown RBP7.95□□□□□ -1.14
CD44-236ENST00000533222 CBLBQ13191 982 aa7.95□□□□□ -1.14
CD44-236ENST00000533222 STAU1O95793 577 aaKnown RBP7.94□□□□□ -1.14
CD44-236ENST00000533222 ADD1P35611 737 aaKnown RBP7.94□□□□□ -1.14
CD44-236ENST00000533222 SRPK2P78362 688 aaKnown RBP7.94□□□□□ -1.14
CD44-236ENST00000533222 PLEKHM2Q8IWE5 1019 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms