RNA–Protein interactions for RNA: ENST00000533209.5

SSBP3-214, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 4

Gene SSBP3, Length 552 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-214ENST00000533209 ABCC6O95255 1503 aa16.45■□□□□ 0.22
SSBP3-214ENST00000533209 MAP3K19Q56UN5 1328 aa16.45■□□□□ 0.22
SSBP3-214ENST00000533209 COL5A2P05997 1499 aaPredicted RBP16.44■□□□□ 0.22
SSBP3-214ENST00000533209 NSD2O96028 1365 aa16.44■□□□□ 0.22
SSBP3-214ENST00000533209 CCDC9Q9Y3X0 531 aaKnown RBP16.44■□□□□ 0.22
SSBP3-214ENST00000533209 SPATA31A5Q5VU36 1347 aa16.44■□□□□ 0.22
SSBP3-214ENST00000533209 SPATA31A7Q8IWB4 1347 aa16.44■□□□□ 0.22
SSBP3-214ENST00000533209 GLI3P10071 1580 aa16.43■□□□□ 0.22
SSBP3-214ENST00000533209 CDK12Q9NYV4 1490 aaPredicted RBP16.43■□□□□ 0.22
SSBP3-214ENST00000533209 EVA1CP58658 441 aa16.43■□□□□ 0.22
SSBP3-214ENST00000533209 RRS1Q15050 365 aaKnown RBP16.43■□□□□ 0.22
SSBP3-214ENST00000533209 LARP1Q6PKG0 1096 aaKnown RBP16.43■□□□□ 0.22
SSBP3-214ENST00000533209 IP6K1Q92551 441 aa16.42■□□□□ 0.22
SSBP3-214ENST00000533209 SPATA31A1Q5TZJ5 1347 aa16.42■□□□□ 0.22
SSBP3-214ENST00000533209 HOXC9P31274 260 aa16.41■□□□□ 0.22
SSBP3-214ENST00000533209 RGS12O14924 1447 aa16.41■□□□□ 0.22
SSBP3-214ENST00000533209 AMPHP49418 695 aa16.4■□□□□ 0.22
SSBP3-214ENST00000533209 LTN1O94822 1766 aa16.4■□□□□ 0.22
SSBP3-214ENST00000533209 WDR17Q8IZU2 1322 aa16.4■□□□□ 0.22
SSBP3-214ENST00000533209 RTL1A6NKG5 1358 aa16.39■□□□□ 0.21
SSBP3-214ENST00000533209 NPC1L1Q9UHC9 1359 aa16.39■□□□□ 0.21
SSBP3-214ENST00000533209 BLMP54132 1417 aaPredicted RBP16.39■□□□□ 0.21
SSBP3-214ENST00000533209 ONECUT3O60422 494 aaPredicted RBP16.39■□□□□ 0.21
SSBP3-214ENST00000533209 TNNT2P45379 298 aaPredicted RBP16.39■□□□□ 0.21
SSBP3-214ENST00000533209 MORC1Q86VD1 984 aa16.39■□□□□ 0.21
SSBP3-214ENST00000533209 EMILIN1Q9Y6C2 1016 aa16.39■□□□□ 0.21
SSBP3-214ENST00000533209 ERBB3P21860 1342 aa16.39■□□□□ 0.21
SSBP3-214ENST00000533209 ANKRD26Q9UPS8 1709 aa16.39■□□□□ 0.21
SSBP3-214ENST00000533209 CRB1P82279 1406 aa16.38■□□□□ 0.21
SSBP3-214ENST00000533209 POLKQ9UBT6 870 aa16.38■□□□□ 0.21
SSBP3-214ENST00000533209 CSB-PGBD3P0DP91 1061 aa16.37■□□□□ 0.21
SSBP3-214ENST00000533209 FAM98CQ17RN3 349 aaKnown RBP16.37■□□□□ 0.21
SSBP3-214ENST00000533209 CC2D1BQ5T0F9 858 aaKnown RBP16.37■□□□□ 0.21
SSBP3-214ENST00000533209 TOM1L2Q6ZVM7 507 aa16.37■□□□□ 0.21
SSBP3-214ENST00000533209 ANKRD24Q8TF21 1146 aa16.37■□□□□ 0.21
SSBP3-214ENST00000533209 USP35Q9P2H5 1018 aa16.37■□□□□ 0.21
SSBP3-214ENST00000533209 KIF24Q5T7B8 1368 aa16.37■□□□□ 0.21
SSBP3-214ENST00000533209 RGPD5Q99666 1765 aa16.36■□□□□ 0.21
SSBP3-214ENST00000533209 TCP11L2Q8N4U5 519 aa16.36■□□□□ 0.21
SSBP3-214ENST00000533209 FLT4P35916 1363 aa16.36■□□□□ 0.21
SSBP3-214ENST00000533209 PEAK1Q9H792 1746 aa16.36■□□□□ 0.21
SSBP3-214ENST00000533209 HSP90AB2PQ58FF8 381 aa16.35■□□□□ 0.21
SSBP3-214ENST00000533209 BARGINQ6ZT62 677 aa16.35■□□□□ 0.21
SSBP3-214ENST00000533209 SEPT12Q8IYM1 358 aa16.35■□□□□ 0.21
SSBP3-214ENST00000533209 CARD10Q9BWT7 1032 aa16.35■□□□□ 0.21
SSBP3-214ENST00000533209 THRAP3Q9Y2W1 955 aaKnown RBP16.35■□□□□ 0.21
SSBP3-214ENST00000533209 PPM1GO15355 546 aaPredicted RBP16.34■□□□□ 0.21
SSBP3-214ENST00000533209 DDX10Q13206 875 aaKnown RBP16.34■□□□□ 0.21
SSBP3-214ENST00000533209 LTV1Q96GA3 475 aaPredicted RBP16.34■□□□□ 0.21
SSBP3-214ENST00000533209 INSRP06213 1382 aa16.34■□□□□ 0.21
SSBP3-214ENST00000533209 NLRP2Q9NX02 1062 aa16.33■□□□□ 0.2
SSBP3-214ENST00000533209 CNGB1Q14028 1251 aaPredicted RBP16.32■□□□□ 0.2
SSBP3-214ENST00000533209 SMG6Q86US8 1419 aaKnown RBP16.32■□□□□ 0.2
SSBP3-214ENST00000533209 THSD7AQ9UPZ6 1657 aa16.32■□□□□ 0.2
SSBP3-214ENST00000533209 A0A0G2JS52 829 aa16.31■□□□□ 0.2
SSBP3-214ENST00000533209 ZNF316A6NFI3 1004 aaPredicted RBP16.31■□□□□ 0.2
SSBP3-214ENST00000533209 MYT1Q01538 1121 aa16.31■□□□□ 0.2
SSBP3-214ENST00000533209 MAP2P11137 1827 aaKnown RBP16.29■□□□□ 0.2
SSBP3-214ENST00000533209 NBPF6Q5VWK0 638 aa16.29■□□□□ 0.2
SSBP3-214ENST00000533209 NBPF4Q96M43 638 aa16.29■□□□□ 0.2
SSBP3-214ENST00000533209 DISP2A7MBM2 1401 aa16.28■□□□□ 0.2
SSBP3-214ENST00000533209 SOCS7O14512 581 aa16.28■□□□□ 0.2
SSBP3-214ENST00000533209 MTHFSP49914 203 aa16.27■□□□□ 0.2
SSBP3-214ENST00000533209 EIF4A2Q14240 407 aaKnown RBP16.27■□□□□ 0.2
SSBP3-214ENST00000533209 KRT27Q7Z3Y8 459 aa16.27■□□□□ 0.2
SSBP3-214ENST00000533209 CDCA7Q9BWT1 371 aaPredicted RBP16.27■□□□□ 0.2
SSBP3-214ENST00000533209 FAM208AQ9UK61 1670 aaKnown RBP16.26■□□□□ 0.19
SSBP3-214ENST00000533209 BRWD3Q6RI45 1802 aa16.25■□□□□ 0.19
SSBP3-214ENST00000533209 USHBP1Q8N6Y0 703 aa16.25■□□□□ 0.19
SSBP3-214ENST00000533209 IL2RBP14784 551 aa16.24■□□□□ 0.19
SSBP3-214ENST00000533209 EYA1Q99502 592 aa16.24■□□□□ 0.19
SSBP3-214ENST00000533209 PARP4Q9UKK3 1724 aaKnown RBP16.24■□□□□ 0.19
SSBP3-214ENST00000533209 PARD3Q8TEW0 1356 aa16.24■□□□□ 0.19
SSBP3-214ENST00000533209 NCAPD2Q15021 1401 aa16.23■□□□□ 0.19
SSBP3-214ENST00000533209 DDB1Q16531 1140 aa16.23■□□□□ 0.19
SSBP3-214ENST00000533209 RGPD2P0DJD1 1756 aa16.23■□□□□ 0.19
SSBP3-214ENST00000533209 WNK3Q9BYP7 1800 aa16.22■□□□□ 0.19
SSBP3-214ENST00000533209 PPP2R1AP30153 589 aa16.22■□□□□ 0.19
SSBP3-214ENST00000533209 PDE3BQ13370 1112 aa16.22■□□□□ 0.19
SSBP3-214ENST00000533209 FAM182BQ5T319 152 aa16.22■□□□□ 0.19
SSBP3-214ENST00000533209 EP400Q96L91 3159 aa16.22■□□□□ 0.19
SSBP3-214ENST00000533209 LRRC37A3O60309 1634 aa16.22■□□□□ 0.19
SSBP3-214ENST00000533209 IL13P35225 146 aa16.21■□□□□ 0.19
SSBP3-214ENST00000533209 UPF1Q92900 1129 aaKnown RBP eCLIP16.21■□□□□ 0.19
SSBP3-214ENST00000533209 TNS2Q63HR2 1409 aa16.2■□□□□ 0.18
SSBP3-214ENST00000533209 MEGF6O75095 1541 aa16.2■□□□□ 0.18
SSBP3-214ENST00000533209 EXOC5O00471 708 aa16.2■□□□□ 0.18
SSBP3-214ENST00000533209 IGSF1Q8N6C5 1336 aa16.19■□□□□ 0.18
SSBP3-214ENST00000533209 COL3A1P02461 1466 aaPredicted RBP16.19■□□□□ 0.18
SSBP3-214ENST00000533209 MARCH10Q8NA82 808 aaPredicted RBP16.19■□□□□ 0.18
SSBP3-214ENST00000533209 OVOS2A0A0G2JMS6 1433 aa16.19■□□□□ 0.18
SSBP3-214ENST00000533209 RALBP1Q15311 655 aa16.18■□□□□ 0.18
SSBP3-214ENST00000533209 RAPGEF4Q8WZA2 1011 aa16.18■□□□□ 0.18
SSBP3-214ENST00000533209 DIAPH1O60610 1272 aaKnown RBP16.17■□□□□ 0.18
SSBP3-214ENST00000533209 TATP17735 454 aaPredicted RBP16.17■□□□□ 0.18
SSBP3-214ENST00000533209 FAM196AQ6ZSG2 479 aa16.17■□□□□ 0.18
SSBP3-214ENST00000533209 ZCRB1Q8TBF4 217 aaKnown RBP16.16■□□□□ 0.18
SSBP3-214ENST00000533209 AEBP1Q8IUX7 1158 aa16.15■□□□□ 0.18
SSBP3-214ENST00000533209 CFAP53Q96M91 514 aa16.15■□□□□ 0.18
SSBP3-214ENST00000533209 RGPD1P0DJD0 1748 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms