RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 TSPYL6Q8N831 410 aa24.23■■□□□ 1.47
VPS28-213ENST00000530983 NRXN3Q9Y4C0 1643 aa24.23■■□□□ 1.47
VPS28-213ENST00000530983 TSPOAP1O95153 1857 aa24.22■■□□□ 1.47
VPS28-213ENST00000530983 ARHGAP45Q92619 1136 aa24.22■■□□□ 1.47
VPS28-213ENST00000530983 CALD1Q05682 793 aaKnown RBP24.22■■□□□ 1.47
VPS28-213ENST00000530983 NME9Q86XW9 330 aa24.22■■□□□ 1.47
VPS28-213ENST00000530983 IFT57Q9NWB7 429 aa24.22■■□□□ 1.47
VPS28-213ENST00000530983 ZNF853P0CG23 659 aa24.21■■□□□ 1.47
VPS28-213ENST00000530983 GNAI1P63096 354 aa24.2■■□□□ 1.46
VPS28-213ENST00000530983 MBIPQ9NS73 344 aa24.2■■□□□ 1.46
VPS28-213ENST00000530983 WASLO00401 505 aaPredicted RBP24.19■■□□□ 1.46
VPS28-213ENST00000530983 EIF5BO60841 1220 aaKnown RBP24.19■■□□□ 1.46
VPS28-213ENST00000530983 RBM25P49756 843 aaKnown RBP24.19■■□□□ 1.46
VPS28-213ENST00000530983 UBE2Q2Q8WVN8 375 aa24.19■■□□□ 1.46
VPS28-213ENST00000530983 ZRANB1Q9UGI0 708 aa24.19■■□□□ 1.46
VPS28-213ENST00000530983 MON2Q7Z3U7 1717 aa24.19■■□□□ 1.46
VPS28-213ENST00000530983 AATKQ6ZMQ8 1374 aa24.19■■□□□ 1.46
VPS28-213ENST00000530983 FAM43AQ8N2R8 423 aa24.19■■□□□ 1.46
VPS28-213ENST00000530983 CHMP5Q9NZZ3 219 aa24.18■■□□□ 1.46
VPS28-213ENST00000530983 ABCC4O15439 1325 aa24.17■■□□□ 1.46
VPS28-213ENST00000530983 MCM4P33991 863 aa24.17■■□□□ 1.46
VPS28-213ENST00000530983 C1orf115Q9H7X2 142 aa24.17■■□□□ 1.46
VPS28-213ENST00000530983 CPS1P31327 1500 aa24.17■■□□□ 1.46
VPS28-213ENST00000530983 METP08581 1390 aa24.17■■□□□ 1.46
VPS28-213ENST00000530983 BMP2KLQ5H9B9 411 aa24.17■■□□□ 1.46
VPS28-213ENST00000530983 GCC1Q96CN9 775 aa24.17■■□□□ 1.46
VPS28-213ENST00000530983 ELL2O00472 640 aaPredicted RBP24.16■■□□□ 1.46
VPS28-213ENST00000530983 HSCBQ8IWL3 235 aa24.16■■□□□ 1.46
VPS28-213ENST00000530983 CHMP4BQ9H444 224 aaKnown RBP24.16■■□□□ 1.46
VPS28-213ENST00000530983 NCOA3Q9Y6Q9 1424 aa24.16■■□□□ 1.46
VPS28-213ENST00000530983 ANKRD45Q5TZF3 282 aa24.15■■□□□ 1.46
VPS28-213ENST00000530983 TWISTNBQ3B726 338 aaPredicted RBP24.14■■□□□ 1.45
VPS28-213ENST00000530983 SIRT2Q8IXJ6 389 aa24.14■■□□□ 1.45
VPS28-213ENST00000530983 ZNF692Q9BU19 519 aaPredicted RBP24.14■■□□□ 1.45
VPS28-213ENST00000530983 AKAP12Q02952 1782 aa24.14■■□□□ 1.45
VPS28-213ENST00000530983 NCKAP5LQ9HCH0 1330 aa24.14■■□□□ 1.45
VPS28-213ENST00000530983 C3P01024 1663 aa24.14■■□□□ 1.45
VPS28-213ENST00000530983 CFAP44Q96MT7 982 aa24.13■■□□□ 1.45
VPS28-213ENST00000530983 KNDC1Q76NI1 1749 aa24.13■■□□□ 1.45
VPS28-213ENST00000530983 NUDT16Q96DE0 195 aaKnown RBP24.13■■□□□ 1.45
VPS28-213ENST00000530983 RRS1Q15050 365 aaKnown RBP24.12■■□□□ 1.45
VPS28-213ENST00000530983 C8orf58Q8NAV2 365 aa24.12■■□□□ 1.45
VPS28-213ENST00000530983 TXNDC2Q86VQ3 553 aa24.12■■□□□ 1.45
VPS28-213ENST00000530983 COG3Q96JB2 828 aa24.12■■□□□ 1.45
VPS28-213ENST00000530983 ITSN1Q15811 1721 aa24.11■■□□□ 1.45
VPS28-213ENST00000530983 LMOD3Q0VAK6 560 aa24.11■■□□□ 1.45
VPS28-213ENST00000530983 SNX21Q969T3 373 aa24.11■■□□□ 1.45
VPS28-213ENST00000530983 FAM83GA6ND36 823 aa24.11■■□□□ 1.45
VPS28-213ENST00000530983 DDIT3P35638 169 aa24.11■■□□□ 1.45
VPS28-213ENST00000530983 L1TD1Q5T7N2 865 aaKnown RBP24.1■■□□□ 1.45
VPS28-213ENST00000530983 CCDC61Q9Y6R9 512 aa24.09■■□□□ 1.45
VPS28-213ENST00000530983 MLECQ14165 292 aa24.09■■□□□ 1.45
VPS28-213ENST00000530983 KIF2CQ99661 725 aa24.08■■□□□ 1.45
VPS28-213ENST00000530983 TECPR2O15040 1411 aa24.08■■□□□ 1.44
VPS28-213ENST00000530983 NRKQ7Z2Y5 1582 aa24.07■■□□□ 1.44
VPS28-213ENST00000530983 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.07■■□□□ 1.44
VPS28-213ENST00000530983 DCTN1Q14203 1278 aa24.06■■□□□ 1.44
VPS28-213ENST00000530983 API5Q9BZZ5 524 aaKnown RBP24.06■■□□□ 1.44
VPS28-213ENST00000530983 TBC1D9Q6ZT07 1266 aa24.06■■□□□ 1.44
VPS28-213ENST00000530983 FSD2A1L4K1 749 aa24.05■■□□□ 1.44
VPS28-213ENST00000530983 SIRT1Q96EB6 747 aa24.04■■□□□ 1.44
VPS28-213ENST00000530983 PRR36Q9H6K5 1346 aa24.04■■□□□ 1.44
VPS28-213ENST00000530983 TRAK2O60296 914 aa24.04■■□□□ 1.44
VPS28-213ENST00000530983 KIF24Q5T7B8 1368 aa24.03■■□□□ 1.44
VPS28-213ENST00000530983 GZF1Q9H116 711 aaPredicted RBP24.02■■□□□ 1.44
VPS28-213ENST00000530983 ESF1Q9H501 851 aaKnown RBP24.01■■□□□ 1.43
VPS28-213ENST00000530983 GOLGA6L3A6NEY3 463 aa24.01■■□□□ 1.43
VPS28-213ENST00000530983 AEBP1Q8IUX7 1158 aa24.01■■□□□ 1.43
VPS28-213ENST00000530983 HDGFP51858 240 aaKnown RBP24■■□□□ 1.43
VPS28-213ENST00000530983 CD2BP2O95400 341 aaKnown RBP24■■□□□ 1.43
VPS28-213ENST00000530983 XRCC6P12956 609 aaKnown RBP eCLIP24■■□□□ 1.437e-6■□□□□ 8.8
VPS28-213ENST00000530983 DDX11L8A8MPP1 907 aa23.99■■□□□ 1.43
VPS28-213ENST00000530983 HSP90AB1P08238 724 aaKnown RBP23.99■■□□□ 1.43
VPS28-213ENST00000530983 EIF4A2Q14240 407 aaKnown RBP23.99■■□□□ 1.43
VPS28-213ENST00000530983 RGS12O14924 1447 aa23.99■■□□□ 1.43
VPS28-213ENST00000530983 RRAGDQ9NQL2 400 aaPredicted RBP23.99■■□□□ 1.43
VPS28-213ENST00000530983 GSPT1P15170 499 aaKnown RBP23.98■■□□□ 1.43
VPS28-213ENST00000530983 INTS3Q68E01 1043 aaKnown RBP23.98■■□□□ 1.43
VPS28-213ENST00000530983 SULT6B1Q6IMI4 303 aa23.98■■□□□ 1.43
VPS28-213ENST00000530983 ARXQ96QS3 562 aa23.98■■□□□ 1.43
VPS28-213ENST00000530983 CIZ1Q9ULV3 898 aaPredicted RBP23.98■■□□□ 1.43
VPS28-213ENST00000530983 TNPO1Q92973 898 aaKnown RBP23.97■■□□□ 1.43
VPS28-213ENST00000530983 DCTPP1Q9H773 170 aa23.97■■□□□ 1.43
VPS28-213ENST00000530983 ROBO2Q9HCK4 1378 aa23.97■■□□□ 1.43
VPS28-213ENST00000530983 CDC45O75419 566 aa23.96■■□□□ 1.43
VPS28-213ENST00000530983 KRT24Q2M2I5 525 aa23.96■■□□□ 1.43
VPS28-213ENST00000530983 PLEKHM2Q8IWE5 1019 aa23.96■■□□□ 1.43
VPS28-213ENST00000530983 ATP10DQ9P241 1426 aa23.96■■□□□ 1.43
VPS28-213ENST00000530983 TOPAZ1Q8N9V7 1692 aa23.96■■□□□ 1.43
VPS28-213ENST00000530983 RBM42Q9BTD8 480 aaKnown RBP23.95■■□□□ 1.43
VPS28-213ENST00000530983 KIF13AQ9H1H9 1805 aa23.95■■□□□ 1.42
VPS28-213ENST00000530983 PEAK1Q9H792 1746 aa23.95■■□□□ 1.42
VPS28-213ENST00000530983 OVOS2A0A0J9YW53 1432 aa23.94■■□□□ 1.42
VPS28-213ENST00000530983 OVOS2Q6IE36 1432 aa23.94■■□□□ 1.42
VPS28-213ENST00000530983 RGPD1P0DJD0 1748 aa23.94■■□□□ 1.42
VPS28-213ENST00000530983 NALCNQ8IZF0 1738 aa23.94■■□□□ 1.42
VPS28-213ENST00000530983 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.94■■□□□ 1.42
VPS28-213ENST00000530983 CHL1O00533 1208 aa23.94■■□□□ 1.42
VPS28-213ENST00000530983 RAB3GAP1Q15042 981 aa23.94■■□□□ 1.42
VPS28-213ENST00000530983 TTC21BQ7Z4L5 1316 aa23.94■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms