RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 FAM83GA6ND36 823 aa18.56■□□□□ 0.56
CD44-224ENST00000526669 C8orf37Q96NL8 207 aa18.56■□□□□ 0.56
CD44-224ENST00000526669 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.56■□□□□ 0.56
CD44-224ENST00000526669 CAMTA1Q9Y6Y1 1673 aa18.56■□□□□ 0.56
CD44-224ENST00000526669 SMG6Q86US8 1419 aaKnown RBP18.56■□□□□ 0.56
CD44-224ENST00000526669 ABCC6O95255 1503 aa18.55■□□□□ 0.56
CD44-224ENST00000526669 MYBBP1AQ9BQG0 1328 aaKnown RBP18.54■□□□□ 0.56
CD44-224ENST00000526669 FAM208AQ9UK61 1670 aaKnown RBP18.54■□□□□ 0.56
CD44-224ENST00000526669 CDK12Q9NYV4 1490 aaPredicted RBP18.54■□□□□ 0.56
CD44-224ENST00000526669 HOXC9P31274 260 aa18.54■□□□□ 0.56
CD44-224ENST00000526669 MTHFSP49914 203 aa18.54■□□□□ 0.56
CD44-224ENST00000526669 RTL1A6NKG5 1358 aa18.54■□□□□ 0.56
CD44-224ENST00000526669 FLT4P35916 1363 aa18.54■□□□□ 0.56
CD44-224ENST00000526669 LTV1Q96GA3 475 aaPredicted RBP18.53■□□□□ 0.56
CD44-224ENST00000526669 AXIN2Q9Y2T1 843 aa18.53■□□□□ 0.56
CD44-224ENST00000526669 IP6K1Q92551 441 aa18.52■□□□□ 0.56
CD44-224ENST00000526669 NGLY1Q96IV0 654 aa18.52■□□□□ 0.56
CD44-224ENST00000526669 WNK3Q9BYP7 1800 aa18.51■□□□□ 0.55
CD44-224ENST00000526669 SLIT2O94813 1529 aa18.51■□□□□ 0.55
CD44-224ENST00000526669 HSP90AB2PQ58FF8 381 aa18.51■□□□□ 0.55
CD44-224ENST00000526669 BTG4Q9NY30 223 aa18.51■□□□□ 0.55
CD44-224ENST00000526669 COL3A1P02461 1466 aaPredicted RBP18.51■□□□□ 0.55
CD44-224ENST00000526669 STRN4Q9NRL3 753 aa18.5■□□□□ 0.55
CD44-224ENST00000526669 COL5A2P05997 1499 aaPredicted RBP18.5■□□□□ 0.55
CD44-224ENST00000526669 AFF2P51816 1311 aa18.49■□□□□ 0.55
CD44-224ENST00000526669 BLMP54132 1417 aaPredicted RBP18.49■□□□□ 0.55
CD44-224ENST00000526669 RGPD1P0DJD0 1748 aa18.49■□□□□ 0.55
CD44-224ENST00000526669 INSRP06213 1382 aa18.48■□□□□ 0.55
CD44-224ENST00000526669 KIF24Q5T7B8 1368 aa18.48■□□□□ 0.55
CD44-224ENST00000526669 MIER1Q8N108 512 aa18.48■□□□□ 0.55
CD44-224ENST00000526669 CCDC184Q52MB2 194 aa18.47■□□□□ 0.55
CD44-224ENST00000526669 ANKRD24Q8TF21 1146 aa18.47■□□□□ 0.55
CD44-224ENST00000526669 BCL9LQ86UU0 1499 aa18.46■□□□□ 0.54
CD44-224ENST00000526669 CSB-PGBD3P0DP91 1061 aa18.45■□□□□ 0.54
CD44-224ENST00000526669 EVA1CP58658 441 aa18.45■□□□□ 0.54
CD44-224ENST00000526669 EIF4A2Q14240 407 aaKnown RBP18.45■□□□□ 0.54
CD44-224ENST00000526669 CFAP53Q96M91 514 aa18.45■□□□□ 0.54
CD44-224ENST00000526669 USP21Q9UK80 565 aa18.45■□□□□ 0.54
CD44-224ENST00000526669 ERBB3P21860 1342 aa18.45■□□□□ 0.54
CD44-224ENST00000526669 LARP1Q6PKG0 1096 aaKnown RBP18.43■□□□□ 0.54
CD44-224ENST00000526669 UNC5CLQ8IV45 518 aa18.43■□□□□ 0.54
CD44-224ENST00000526669 FNBP4Q8N3X1 1017 aaPredicted RBP18.43■□□□□ 0.54
CD44-224ENST00000526669 DIAPH1O60610 1272 aaKnown RBP18.42■□□□□ 0.54
CD44-224ENST00000526669 USHBP1Q8N6Y0 703 aa18.42■□□□□ 0.54
CD44-224ENST00000526669 WDR17Q8IZU2 1322 aa18.42■□□□□ 0.54
CD44-224ENST00000526669 VIRMAQ69YN4 1812 aaKnown RBP18.42■□□□□ 0.54
CD44-224ENST00000526669 TOM1L2Q6ZVM7 507 aa18.41■□□□□ 0.54
CD44-224ENST00000526669 MRS2Q9HD23 443 aa18.41■□□□□ 0.54
CD44-224ENST00000526669 NLRP2Q9NX02 1062 aa18.41■□□□□ 0.54
CD44-224ENST00000526669 CCDC9Q9Y3X0 531 aaKnown RBP18.41■□□□□ 0.54
CD44-224ENST00000526669 KAT6BQ8WYB5 2073 aa18.4■□□□□ 0.54
CD44-224ENST00000526669 GLI3P10071 1580 aa18.4■□□□□ 0.54
CD44-224ENST00000526669 U2SURPO15042 1029 aaKnown RBP18.4■□□□□ 0.54
CD44-224ENST00000526669 IL13P35225 146 aa18.4■□□□□ 0.54
CD44-224ENST00000526669 PHF23Q9BUL5 403 aaPredicted RBP18.4■□□□□ 0.54
CD44-224ENST00000526669 PARP4Q9UKK3 1724 aaKnown RBP18.4■□□□□ 0.54
CD44-224ENST00000526669 CRB1P82279 1406 aa18.4■□□□□ 0.54
CD44-224ENST00000526669 USP35Q9P2H5 1018 aa18.39■□□□□ 0.53
CD44-224ENST00000526669 ATRNO75882 1429 aa18.39■□□□□ 0.53
CD44-224ENST00000526669 BRWD3Q6RI45 1802 aa18.38■□□□□ 0.53
CD44-224ENST00000526669 NBPF6Q5VWK0 638 aa18.38■□□□□ 0.53
CD44-224ENST00000526669 NBPF4Q96M43 638 aa18.38■□□□□ 0.53
CD44-224ENST00000526669 EYA1Q99502 592 aa18.38■□□□□ 0.53
CD44-224ENST00000526669 DLG5Q8TDM6 1919 aa18.37■□□□□ 0.53
CD44-224ENST00000526669 VPS72Q15906 364 aa18.36■□□□□ 0.53
CD44-224ENST00000526669 SHANK3Q9BYB0 1731 aa18.36■□□□□ 0.53
CD44-224ENST00000526669 SPATA31A5Q5VU36 1347 aa18.35■□□□□ 0.53
CD44-224ENST00000526669 SPATA31A7Q8IWB4 1347 aa18.35■□□□□ 0.53
CD44-224ENST00000526669 IGSF1Q8N6C5 1336 aa18.35■□□□□ 0.53
CD44-224ENST00000526669 HMOX1P09601 288 aa18.35■□□□□ 0.53
CD44-224ENST00000526669 AEBP1Q8IUX7 1158 aa18.35■□□□□ 0.53
CD44-224ENST00000526669 QTRT2Q9H974 415 aaKnown RBP18.35■□□□□ 0.53
CD44-224ENST00000526669 RGS17Q9UGC6 210 aaPredicted RBP18.35■□□□□ 0.53
CD44-224ENST00000526669 NUDCQ9Y266 331 aa18.35■□□□□ 0.53
CD44-224ENST00000526669 SPATA31A1Q5TZJ5 1347 aa18.34■□□□□ 0.53
CD44-224ENST00000526669 CCER2I3L3R5 266 aa18.34■□□□□ 0.53
CD44-224ENST00000526669 U2AF1L5P0DN76 240 aaPredicted RBP18.34■□□□□ 0.53
CD44-224ENST00000526669 U2AF1Q01081 240 aaKnown RBP eCLIP18.34■□□□□ 0.53
CD44-224ENST00000526669 ZNF772Q68DY9 489 aaPredicted RBP18.34■□□□□ 0.53
CD44-224ENST00000526669 CARD10Q9BWT7 1032 aa18.34■□□□□ 0.53
CD44-224ENST00000526669 TRPC5Q9UL62 973 aaPredicted RBP18.34■□□□□ 0.53
CD44-224ENST00000526669 NCAPD2Q15021 1401 aa18.33■□□□□ 0.53
CD44-224ENST00000526669 PKD1L3Q7Z443 1732 aa18.33■□□□□ 0.52
CD44-224ENST00000526669 WDR43Q15061 677 aaKnown RBP eCLIP18.33■□□□□ 0.52
CD44-224ENST00000526669 SULT6B1Q6IMI4 303 aa18.33■□□□□ 0.52
CD44-224ENST00000526669 MEGF6O75095 1541 aa18.33■□□□□ 0.52
CD44-224ENST00000526669 THSD7AQ9UPZ6 1657 aa18.32■□□□□ 0.52
CD44-224ENST00000526669 LRRC37A3O60309 1634 aa18.32■□□□□ 0.52
CD44-224ENST00000526669 POTEAQ6S8J7 498 aa18.31■□□□□ 0.52
CD44-224ENST00000526669 FAM98CQ17RN3 349 aaKnown RBP18.3■□□□□ 0.52
CD44-224ENST00000526669 FAM9BQ8IZU0 186 aa18.3■□□□□ 0.52
CD44-224ENST00000526669 TCP11L2Q8N4U5 519 aa18.3■□□□□ 0.52
CD44-224ENST00000526669 GJD4Q96KN9 370 aaPredicted RBP18.3■□□□□ 0.52
CD44-224ENST00000526669 A0A0G2JS52 829 aa18.28■□□□□ 0.52
CD44-224ENST00000526669 MYT1Q01538 1121 aa18.28■□□□□ 0.52
CD44-224ENST00000526669 PNISRQ8TF01 805 aaKnown RBP18.28■□□□□ 0.52
CD44-224ENST00000526669 ADAMTS8Q9UP79 889 aa18.28■□□□□ 0.52
CD44-224ENST00000526669 DISP2A7MBM2 1401 aa18.28■□□□□ 0.52
CD44-224ENST00000526669 KDRP35968 1356 aa18.28■□□□□ 0.52
CD44-224ENST00000526669 CCDC146Q8IYE0 955 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms