RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 BANK1Q8NDB2 785 aa8.17□□□□□ -1.1
CD44-219ENST00000525685 CDV3Q9UKY7 258 aaKnown RBP8.17□□□□□ -1.1
CD44-219ENST00000525685 CCDC116Q8IYX3 515 aa8.16□□□□□ -1.1
CD44-219ENST00000525685 ZFP42Q96MM3 310 aa8.16□□□□□ -1.1
CD44-219ENST00000525685 KCTD15Q96SI1 283 aaPredicted RBP8.16□□□□□ -1.1
CD44-219ENST00000525685 EMILIN1Q9Y6C2 1016 aa8.15□□□□□ -1.1
CD44-219ENST00000525685 SOCS7O14512 581 aa8.14□□□□□ -1.11
CD44-219ENST00000525685 LCE2AQ5TA79 106 aaPredicted RBP8.14□□□□□ -1.11
CD44-219ENST00000525685 MTMR14Q8NCE2 650 aa8.14□□□□□ -1.11
CD44-219ENST00000525685 SCARF1Q14162 830 aa8.13□□□□□ -1.11
CD44-219ENST00000525685 PPP1R26Q5T8A7 1209 aaPredicted RBP8.13□□□□□ -1.11
CD44-219ENST00000525685 MEIOBQ8N635 442 aa8.13□□□□□ -1.11
CD44-219ENST00000525685 PURBQ96QR8 312 aaKnown RBP8.13□□□□□ -1.11
CD44-219ENST00000525685 SNRKQ9NRH2 765 aa8.13□□□□□ -1.11
CD44-219ENST00000525685 GPR37L1O60883 481 aa8.12□□□□□ -1.11
CD44-219ENST00000525685 INTS6LQ5JSJ4 861 aaKnown RBP8.12□□□□□ -1.11
CD44-219ENST00000525685 TREML4Q6UXN2 200 aa8.12□□□□□ -1.11
CD44-219ENST00000525685 ZBBXA8MT70 800 aa8.11□□□□□ -1.11
CD44-219ENST00000525685 DHX9Q08211 1270 aaKnown RBP8.11□□□□□ -1.11
CD44-219ENST00000525685 NFX1Q12986 1120 aaKnown RBP8.11□□□□□ -1.11
CD44-219ENST00000525685 NBPF20Q3BBV1 942 aa8.11□□□□□ -1.11
CD44-219ENST00000525685 DZIP3Q86Y13 1208 aaKnown RBP8.11□□□□□ -1.11
CD44-219ENST00000525685 FBXO45P0C2W1 286 aa8.1□□□□□ -1.11
CD44-219ENST00000525685 TMEM132AQ24JP5 1023 aa8.1□□□□□ -1.11
CD44-219ENST00000525685 LINC00528Q8N1L1 170 aa8.1□□□□□ -1.11
CD44-219ENST00000525685 PGPEP1Q9NXJ5 209 aa8.1□□□□□ -1.11
CD44-219ENST00000525685 ESPNB1AK53 854 aa8.09□□□□□ -1.11
CD44-219ENST00000525685 TERTO14746 1132 aaKnown RBP8.09□□□□□ -1.11
CD44-219ENST00000525685 WFS1O76024 890 aa8.09□□□□□ -1.11
CD44-219ENST00000525685 C6orf118Q5T5N4 469 aa8.09□□□□□ -1.11
CD44-219ENST00000525685 UPP2O95045 317 aa8.08□□□□□ -1.12
CD44-219ENST00000525685 BMP2P12643 396 aa8.08□□□□□ -1.12
CD44-219ENST00000525685 CBLBQ13191 982 aa8.08□□□□□ -1.12
CD44-219ENST00000525685 Q6ZVU0 165 aa8.08□□□□□ -1.12
CD44-219ENST00000525685 TSEN34Q9BSV6 310 aaKnown RBP8.08□□□□□ -1.12
CD44-219ENST00000525685 NDUFB9Q9Y6M9 179 aa8.08□□□□□ -1.12
CD44-219ENST00000525685 APBB1O00213 710 aa8.07□□□□□ -1.12
CD44-219ENST00000525685 SOBPA7XYQ1 873 aa8.06□□□□□ -1.12
CD44-219ENST00000525685 NR1H3Q13133 447 aa8.06□□□□□ -1.12
CD44-219ENST00000525685 LCE2CQ5TA81 110 aa8.06□□□□□ -1.12
CD44-219ENST00000525685 TMPRSS4Q9NRS4 437 aa8.06□□□□□ -1.12
CD44-219ENST00000525685 NXF1Q9UBU9 619 aaKnown RBP8.06□□□□□ -1.12
CD44-219ENST00000525685 PCDHB9Q9Y5E1 797 aa8.06□□□□□ -1.12
CD44-219ENST00000525685 ERVH48-1M5A8F1 160 aa8.05□□□□□ -1.12
CD44-219ENST00000525685 RAB15P59190 212 aa8.05□□□□□ -1.12
CD44-219ENST00000525685 SEPT12Q8IYM1 358 aa8.05□□□□□ -1.12
CD44-219ENST00000525685 ZNF784Q8NCA9 323 aaPredicted RBP8.05□□□□□ -1.12
CD44-219ENST00000525685 SOS2Q07890 1332 aaPredicted RBP8.04□□□□□ -1.12
CD44-219ENST00000525685 GIGYF1O75420 1035 aaPredicted RBP8.04□□□□□ -1.12
CD44-219ENST00000525685 MAN1A2O60476 641 aa8.03□□□□□ -1.12
CD44-219ENST00000525685 LILRA1O75019 489 aa8.03□□□□□ -1.12
CD44-219ENST00000525685 NPAS3Q8IXF0 933 aa8.03□□□□□ -1.12
CD44-219ENST00000525685 TBC1D2BQ9UPU7 963 aa8.03□□□□□ -1.12
CD44-219ENST00000525685 SPINT1O43278 529 aa8.02□□□□□ -1.13
CD44-219ENST00000525685 ADD1P35611 737 aaKnown RBP8.02□□□□□ -1.13
CD44-219ENST00000525685 AGBL1Q96MI9 1066 aa8.02□□□□□ -1.13
CD44-219ENST00000525685 DNMT3LQ9UJW3 386 aa8.02□□□□□ -1.13
CD44-219ENST00000525685 VEGFBP49765 207 aa8.01□□□□□ -1.13
CD44-219ENST00000525685 MCCD1P59942 119 aaPredicted RBP8.01□□□□□ -1.13
CD44-219ENST00000525685 TTLL8A6PVC2 850 aa8□□□□□ -1.13
CD44-219ENST00000525685 H3BM21 787 aa8□□□□□ -1.13
CD44-219ENST00000525685 ADH1AP07327 375 aa8□□□□□ -1.13
CD44-219ENST00000525685 RELBQ01201 579 aa8□□□□□ -1.13
CD44-219ENST00000525685 KDF1Q8NAX2 398 aaPredicted RBP8□□□□□ -1.13
CD44-219ENST00000525685 SLC16A10Q8TF71 515 aa8□□□□□ -1.13
CD44-219ENST00000525685 ZNF592Q92610 1267 aa8□□□□□ -1.13
CD44-219ENST00000525685 ZNF330Q9Y3S2 320 aaPredicted RBP8□□□□□ -1.13
CD44-219ENST00000525685 WIPF1O43516 503 aa7.99□□□□□ -1.13
CD44-219ENST00000525685 IRF5Q13568 498 aa7.99□□□□□ -1.13
CD44-219ENST00000525685 CCDC125Q86Z20 511 aa7.99□□□□□ -1.13
CD44-219ENST00000525685 CYLDQ9NQC7 956 aa7.99□□□□□ -1.13
CD44-219ENST00000525685 MCM6Q14566 821 aa7.98□□□□□ -1.13
CD44-219ENST00000525685 RNF20Q5VTR2 975 aa7.98□□□□□ -1.13
CD44-219ENST00000525685 PRM3Q9NNZ6 103 aa7.98□□□□□ -1.13
CD44-219ENST00000525685 CTSOP43234 321 aaPredicted RBP7.97□□□□□ -1.13
CD44-219ENST00000525685 INSM2Q96T92 566 aaPredicted RBP7.97□□□□□ -1.13
CD44-219ENST00000525685 ZNF395Q9H8N7 513 aaPredicted RBP7.97□□□□□ -1.13
CD44-219ENST00000525685 FIGNL2A6NMB9 653 aa7.96□□□□□ -1.14
CD44-219ENST00000525685 PTGIRP43119 386 aa7.96□□□□□ -1.14
CD44-219ENST00000525685 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.96□□□□□ -1.14
CD44-219ENST00000525685 IRF7Q92985 503 aa7.96□□□□□ -1.14
CD44-219ENST00000525685 TRIM52Q96A61 297 aa7.96□□□□□ -1.14
CD44-219ENST00000525685 GDPD2Q9HCC8 539 aa7.96□□□□□ -1.14
CD44-219ENST00000525685 GTF3C3Q9Y5Q9 886 aa7.96□□□□□ -1.14
CD44-219ENST00000525685 ERBB4Q15303 1308 aa7.96□□□□□ -1.14
CD44-219ENST00000525685 PPFIA3O75145 1194 aa7.95□□□□□ -1.14
CD44-219ENST00000525685 ERVK-9P63128 1117 aa7.95□□□□□ -1.14
CD44-219ENST00000525685 CEP126Q9P2H0 1117 aa7.95□□□□□ -1.14
CD44-219ENST00000525685 CC2D2BQ6DHV5 1058 aa7.94□□□□□ -1.14
CD44-219ENST00000525685 RNF217Q8TC41 542 aa7.94□□□□□ -1.14
CD44-219ENST00000525685 POLMQ9NP87 494 aaPredicted RBP7.94□□□□□ -1.14
CD44-219ENST00000525685 PCDHB11Q9Y5F2 797 aa7.94□□□□□ -1.14
CD44-219ENST00000525685 VSIG8P0DPA2 414 aa7.93□□□□□ -1.14
CD44-219ENST00000525685 GMPRP36959 345 aa7.93□□□□□ -1.14
CD44-219ENST00000525685 SCTRP47872 440 aa7.93□□□□□ -1.14
CD44-219ENST00000525685 EIF4G2P78344 907 aaKnown RBP eCLIP7.93□□□□□ -1.14
CD44-219ENST00000525685 PTSQ03393 145 aa7.93□□□□□ -1.14
CD44-219ENST00000525685 FOXD4L5Q5VV16 416 aaPredicted RBP7.93□□□□□ -1.14
CD44-219ENST00000525685 ATP5J2-PTCD1G3V325 749 aa7.92□□□□□ -1.14
CD44-219ENST00000525685 ABL2P42684 1182 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms