RNA–Protein interactions for RNA: ENST00000524006.5

SPIDR-222, Transcript of scaffold protein involved in DNA repair, human

TSL 5

Gene SPIDR, Length 970 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIDR-222	ENST00000524006	PNPLA6	Q8IY17	1366 aa		13.91	□□□□□ -0.18
SPIDR-222	ENST00000524006	PIK3C2A	O00443	1686 aa		13.91	□□□□□ -0.18
SPIDR-222	ENST00000524006	PRR36	Q9H6K5	1346 aa		13.9	□□□□□ -0.18
SPIDR-222	ENST00000524006	DCC	P43146	1447 aa		13.9	□□□□□ -0.18
SPIDR-222	ENST00000524006	ZNF772	Q68DY9	489 aa	Predicted RBP	13.9	□□□□□ -0.18
SPIDR-222	ENST00000524006	LTN1	O94822	1766 aa		13.9	□□□□□ -0.18
SPIDR-222	ENST00000524006	ACE	P12821	1306 aa		13.9	□□□□□ -0.19
SPIDR-222	ENST00000524006	TTC21A	Q8NDW8	1320 aa		13.9	□□□□□ -0.19
SPIDR-222	ENST00000524006	NUTM2F	A1L443	756 aa		13.89	□□□□□ -0.19
SPIDR-222	ENST00000524006	FCHSD2	O94868	740 aa		13.89	□□□□□ -0.19
SPIDR-222	ENST00000524006	TMPO	P42166	694 aa	Known RBP	13.89	□□□□□ -0.19
SPIDR-222	ENST00000524006	LMOD3	Q0VAK6	560 aa		13.89	□□□□□ -0.19
SPIDR-222	ENST00000524006	NGDN	Q8NEJ9	315 aa	Known RBP	13.89	□□□□□ -0.19
SPIDR-222	ENST00000524006	MST1R	Q04912	1400 aa		13.89	□□□□□ -0.19
SPIDR-222	ENST00000524006	CT47B1	P0C2W7	299 aa	Predicted RBP	13.88	□□□□□ -0.19
SPIDR-222	ENST00000524006	POLK	Q9UBT6	870 aa		13.88	□□□□□ -0.19
SPIDR-222	ENST00000524006	OVOS2	A0A0J9YW53	1432 aa		13.88	□□□□□ -0.19
SPIDR-222	ENST00000524006	OVOS2	Q6IE36	1432 aa		13.88	□□□□□ -0.19
SPIDR-222	ENST00000524006	IL16	Q14005	1332 aa		13.88	□□□□□ -0.19
SPIDR-222	ENST00000524006	TTC21B	Q7Z4L5	1316 aa		13.88	□□□□□ -0.19
SPIDR-222	ENST00000524006	PLEKHG3	A1L390	1219 aa		13.87	□□□□□ -0.19
SPIDR-222	ENST00000524006	NUTM2B	A6NNL0	878 aa	Predicted RBP	13.87	□□□□□ -0.19
SPIDR-222	ENST00000524006	NUTM2E	B1AL46	878 aa	Predicted RBP	13.87	□□□□□ -0.19
SPIDR-222	ENST00000524006	MS4A1	P11836	297 aa		13.87	□□□□□ -0.19
SPIDR-222	ENST00000524006	PRKAR2B	P31323	418 aa		13.87	□□□□□ -0.19
SPIDR-222	ENST00000524006	RIPK4	P57078	832 aa		13.87	□□□□□ -0.19
SPIDR-222	ENST00000524006	ERICH6	Q7L0X2	663 aa		13.87	□□□□□ -0.19
SPIDR-222	ENST00000524006	NUTM2A	Q8IVF1	878 aa	Predicted RBP	13.87	□□□□□ -0.19
SPIDR-222	ENST00000524006	UPF1	Q92900	1129 aa	Known RBP eCLIP	13.87	□□□□□ -0.19
SPIDR-222	ENST00000524006	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.87	□□□□□ -0.19
SPIDR-222	ENST00000524006	PEAK1	Q9H792	1746 aa		13.87	□□□□□ -0.19
SPIDR-222	ENST00000524006	TCERG1	O14776	1098 aa	Known RBP	13.86	□□□□□ -0.19
SPIDR-222	ENST00000524006	CENPQ	Q7L2Z9	268 aa	Predicted RBP	13.86	□□□□□ -0.19
SPIDR-222	ENST00000524006	FRAT1	Q92837	279 aa	Predicted RBP	13.86	□□□□□ -0.19
SPIDR-222	ENST00000524006	DDX17	Q92841	729 aa	Known RBP	13.86	□□□□□ -0.19
SPIDR-222	ENST00000524006	EMILIN1	Q9Y6C2	1016 aa		13.86	□□□□□ -0.19
SPIDR-222	ENST00000524006	RGPD1	P0DJD0	1748 aa		13.86	□□□□□ -0.19
SPIDR-222	ENST00000524006	MARF1	Q9Y4F3	1742 aa	Known RBP	13.85	□□□□□ -0.19
SPIDR-222	ENST00000524006	RXRB	P28702	533 aa		13.85	□□□□□ -0.19
SPIDR-222	ENST00000524006	PDE3A	Q14432	1141 aa		13.85	□□□□□ -0.19
SPIDR-222	ENST00000524006	FANCI	Q9NVI1	1328 aa		13.85	□□□□□ -0.19
SPIDR-222	ENST00000524006	KIF1A	Q12756	1690 aa		13.85	□□□□□ -0.19
SPIDR-222	ENST00000524006	ADGRL3	Q9HAR2	1447 aa		13.84	□□□□□ -0.19
SPIDR-222	ENST00000524006	BCAR3	O75815	825 aa		13.84	□□□□□ -0.19
SPIDR-222	ENST00000524006	C20orf194	Q5TEA3	1177 aa		13.84	□□□□□ -0.19
SPIDR-222	ENST00000524006	PLEKHF1	Q96S99	279 aa		13.84	□□□□□ -0.19
SPIDR-222	ENST00000524006	AFF2	P51816	1311 aa		13.84	□□□□□ -0.19
SPIDR-222	ENST00000524006	NHSL1	Q5SYE7	1610 aa		13.83	□□□□□ -0.2
SPIDR-222	ENST00000524006	HMOX1	P09601	288 aa		13.83	□□□□□ -0.2
SPIDR-222	ENST00000524006	AAMP	Q13685	434 aa		13.83	□□□□□ -0.2
SPIDR-222	ENST00000524006	RRS1	Q15050	365 aa	Known RBP	13.83	□□□□□ -0.2
SPIDR-222	ENST00000524006	NFE2L2	Q16236	605 aa		13.83	□□□□□ -0.2
SPIDR-222	ENST00000524006	FTSJ3	Q8IY81	847 aa	Known RBP	13.83	□□□□□ -0.2
SPIDR-222	ENST00000524006	RSPH6A	Q9H0K4	717 aa		13.83	□□□□□ -0.2
SPIDR-222	ENST00000524006	ZRANB1	Q9UGI0	708 aa		13.83	□□□□□ -0.2
SPIDR-222	ENST00000524006	ANP32A	P39687	249 aa	Known RBP	13.82	□□□□□ -0.2
SPIDR-222	ENST00000524006	LRRC59	Q96AG4	307 aa	Known RBP	13.82	□□□□□ -0.2
SPIDR-222	ENST00000524006	SMC4	Q9NTJ3	1288 aa		13.82	□□□□□ -0.2
SPIDR-222	ENST00000524006	RARS	P54136	660 aa	Known RBP	13.81	□□□□□ -0.2
SPIDR-222	ENST00000524006	PMFBP1	Q8TBY8	1022 aa		13.81	□□□□□ -0.2
SPIDR-222	ENST00000524006	KIF16B	Q96L93	1317 aa		13.81	□□□□□ -0.2
SPIDR-222	ENST00000524006	SOX12	O15370	315 aa		13.8	□□□□□ -0.2
SPIDR-222	ENST00000524006	IL13	P35225	146 aa		13.8	□□□□□ -0.2
SPIDR-222	ENST00000524006	ZKSCAN2	Q63HK3	967 aa		13.8	□□□□□ -0.2
SPIDR-222	ENST00000524006	TSR2	Q969E8	191 aa	Known RBP	13.8	□□□□□ -0.2
SPIDR-222	ENST00000524006	LAS1L	Q9Y4W2	734 aa	Known RBP	13.8	□□□□□ -0.2
SPIDR-222	ENST00000524006	FLT4	P35916	1363 aa		13.8	□□□□□ -0.2
SPIDR-222	ENST00000524006	C1orf167	Q5SNV9	1468 aa		13.8	□□□□□ -0.2
SPIDR-222	ENST00000524006	C8orf37	Q96NL8	207 aa		13.79	□□□□□ -0.2
SPIDR-222	ENST00000524006	BCL2L13	Q9BXK5	485 aa		13.79	□□□□□ -0.2
SPIDR-222	ENST00000524006	TRIM35	Q9UPQ4	493 aa		13.79	□□□□□ -0.2
SPIDR-222	ENST00000524006	SBNO1	A3KN83	1393 aa		13.79	□□□□□ -0.2
SPIDR-222	ENST00000524006	ARHGEF10	O15013	1369 aa		13.79	□□□□□ -0.2
SPIDR-222	ENST00000524006	USP31	Q70CQ4	1352 aa		13.79	□□□□□ -0.2
SPIDR-222	ENST00000524006	AMPH	P49418	695 aa		13.78	□□□□□ -0.2
SPIDR-222	ENST00000524006	GNAI1	P63096	354 aa		13.78	□□□□□ -0.2
SPIDR-222	ENST00000524006	EXOSC9	Q06265	439 aa	Known RBP	13.78	□□□□□ -0.2
SPIDR-222	ENST00000524006	IPO8	O15397	1037 aa	Known RBP	13.77	□□□□□ -0.21
SPIDR-222	ENST00000524006	FBLN1	P23142	703 aa		13.77	□□□□□ -0.21
SPIDR-222	ENST00000524006	SSH2	Q76I76	1423 aa		13.77	□□□□□ -0.21
SPIDR-222	ENST00000524006	PANK1	Q8TE04	598 aa		13.77	□□□□□ -0.21
SPIDR-222	ENST00000524006	CLUAP1	Q96AJ1	413 aa		13.77	□□□□□ -0.21
SPIDR-222	ENST00000524006	ORAI2	Q96SN7	254 aa		13.77	□□□□□ -0.21
SPIDR-222	ENST00000524006	QTRT2	Q9H974	415 aa	Known RBP	13.77	□□□□□ -0.21
SPIDR-222	ENST00000524006	COG6	Q9Y2V7	657 aa		13.77	□□□□□ -0.21
SPIDR-222	ENST00000524006	EP400	Q96L91	3159 aa		13.77	□□□□□ -0.21
SPIDR-222	ENST00000524006	RGS12	O14924	1447 aa		13.76	□□□□□ -0.21
SPIDR-222	ENST00000524006	PAK3	O75914	559 aa	Predicted RBP	13.76	□□□□□ -0.21
SPIDR-222	ENST00000524006	ZNF428	Q96B54	188 aa		13.76	□□□□□ -0.21
SPIDR-222	ENST00000524006	CACNA1F	O60840	1977 aa		13.76	□□□□□ -0.21
SPIDR-222	ENST00000524006	KIF24	Q5T7B8	1368 aa		13.75	□□□□□ -0.21
SPIDR-222	ENST00000524006	SOS2	Q07890	1332 aa	Predicted RBP	13.75	□□□□□ -0.21
SPIDR-222	ENST00000524006	KDM2B	Q8NHM5	1336 aa		13.75	□□□□□ -0.21
SPIDR-222	ENST00000524006	ADAMTS2	O95450	1211 aa		13.75	□□□□□ -0.21
SPIDR-222	ENST00000524006	HAP1	P54257	671 aa	Predicted RBP	13.75	□□□□□ -0.21
SPIDR-222	ENST00000524006	RBM6	P78332	1123 aa	Known RBP	13.75	□□□□□ -0.21
SPIDR-222	ENST00000524006	EIF4A2	Q14240	407 aa	Known RBP	13.75	□□□□□ -0.21
SPIDR-222	ENST00000524006	DZIP1L	Q8IYY4	767 aa	Known RBP	13.75	□□□□□ -0.21
SPIDR-222	ENST00000524006	IFT57	Q9NWB7	429 aa		13.75	□□□□□ -0.21
SPIDR-222	ENST00000524006	RTL1	A6NKG5	1358 aa		13.74	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms