RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 GMPR2Q9P2T1 348 aaKnown RBP1.06□□□□□ -2.24
RNU4-54P-201ENST00000516428 TIMELESSQ9UNS1 1208 aa1.06□□□□□ -2.24
RNU4-54P-201ENST00000516428 CHMP3Q9Y3E7 222 aa1.06□□□□□ -2.24
RNU4-54P-201ENST00000516428 MAP4K5Q9Y4K4 846 aa1.06□□□□□ -2.24
RNU4-54P-201ENST00000516428 MAGEB6P1A0A0J9YX57 407 aa1.05□□□□□ -2.24
RNU4-54P-201ENST00000516428 CDC14CA4D256 554 aa1.05□□□□□ -2.24
RNU4-54P-201ENST00000516428 FAM177BA6PVY3 158 aa1.05□□□□□ -2.24
RNU4-54P-201ENST00000516428 H3BM21 787 aa1.05□□□□□ -2.24
RNU4-54P-201ENST00000516428 ST8SIA5O15466 376 aa1.05□□□□□ -2.24
RNU4-54P-201ENST00000516428 ADAM23O75077 832 aa1.05□□□□□ -2.24
RNU4-54P-201ENST00000516428 GDF11O95390 407 aa1.05□□□□□ -2.24
RNU4-54P-201ENST00000516428 ZIC2O95409 532 aaPredicted RBP1.05□□□□□ -2.24
RNU4-54P-201ENST00000516428 SMPD1P17405 629 aa1.05□□□□□ -2.24
RNU4-54P-201ENST00000516428 ALAS2P22557 587 aa1.05□□□□□ -2.24
RNU4-54P-201ENST00000516428 GPC1P35052 558 aa1.05□□□□□ -2.24
RNU4-54P-201ENST00000516428 HNRNPUQ00839 825 aaKnown RBP eCLIP1.05□□□□□ -2.24
RNU4-54P-201ENST00000516428 LBRQ14739 615 aaKnown RBP1.05□□□□□ -2.24
RNU4-54P-201ENST00000516428 PCSK7Q16549 785 aa1.05□□□□□ -2.24
RNU4-54P-201ENST00000516428 AMHR2Q16671 573 aa1.05□□□□□ -2.24
RNU4-54P-201ENST00000516428 ESCO1Q5FWF5 840 aa1.05□□□□□ -2.24
RNU4-54P-201ENST00000516428 EFHC2Q5JST6 749 aa1.05□□□□□ -2.24
RNU4-54P-201ENST00000516428 GNASQ5JWF2 1037 aa1.05□□□□□ -2.24
RNU4-54P-201ENST00000516428 SLC27A3Q5K4L6 730 aa1.05□□□□□ -2.24
RNU4-54P-201ENST00000516428 PPP2R2DQ66LE6 453 aa1.05□□□□□ -2.24
RNU4-54P-201ENST00000516428 PDXDC2PQ6P474 469 aa1.05□□□□□ -2.24
RNU4-54P-201ENST00000516428 FIGNL1Q6PIW4 674 aa1.05□□□□□ -2.24
RNU4-54P-201ENST00000516428 TRIM67Q6ZTA4 783 aa1.05□□□□□ -2.24
RNU4-54P-201ENST00000516428 RIC3Q7Z5B4 369 aa1.05□□□□□ -2.24
RNU4-54P-201ENST00000516428 LINC00528Q8N1L1 170 aa1.05□□□□□ -2.24
RNU4-54P-201ENST00000516428 Q8N3U1 123 aa1.05□□□□□ -2.24
RNU4-54P-201ENST00000516428 FAM160A2Q8N612 972 aaPredicted RBP1.05□□□□□ -2.24
RNU4-54P-201ENST00000516428 CCDC102AQ96A19 550 aa1.05□□□□□ -2.24
RNU4-54P-201ENST00000516428 THAP11Q96EK4 314 aa1.05□□□□□ -2.24
RNU4-54P-201ENST00000516428 CDK15Q96Q40 435 aa1.05□□□□□ -2.24
RNU4-54P-201ENST00000516428 BEGAINQ9BUH8 593 aa1.05□□□□□ -2.24
RNU4-54P-201ENST00000516428 POLMQ9NP87 494 aaPredicted RBP1.05□□□□□ -2.24
RNU4-54P-201ENST00000516428 FAM217BQ9NTX9 383 aaPredicted RBP1.05□□□□□ -2.24
RNU4-54P-201ENST00000516428 FAM198AQ9UFP1 575 aa1.05□□□□□ -2.24
RNU4-54P-201ENST00000516428 GDF2Q9UK05 429 aaPredicted RBP1.05□□□□□ -2.24
RNU4-54P-201ENST00000516428 MKL2Q9ULH7 1088 aa1.05□□□□□ -2.24
RNU4-54P-201ENST00000516428 GJA3Q9Y6H8 435 aa1.05□□□□□ -2.24
RNU4-54P-201ENST00000516428 DNMT3AQ9Y6K1 912 aaPredicted RBP1.05□□□□□ -2.24
RNU4-54P-201ENST00000516428 J3QL48 77 aa1.04□□□□□ -2.24
RNU4-54P-201ENST00000516428 MSTNO14793 375 aa1.04□□□□□ -2.24
RNU4-54P-201ENST00000516428 EIF4EBP3O60516 100 aaPredicted RBP1.04□□□□□ -2.24
RNU4-54P-201ENST00000516428 AMPD1P23109 780 aa1.04□□□□□ -2.24
RNU4-54P-201ENST00000516428 RANGAP1P46060 587 aaPredicted RBP1.04□□□□□ -2.24
RNU4-54P-201ENST00000516428 SH3BP2P78314 561 aa1.04□□□□□ -2.24
RNU4-54P-201ENST00000516428 EIF4G2P78344 907 aaKnown RBP eCLIP1.04□□□□□ -2.24
RNU4-54P-201ENST00000516428 SRSF11Q05519 484 aaKnown RBP1.04□□□□□ -2.24
RNU4-54P-201ENST00000516428 TMEM132AQ24JP5 1023 aa1.04□□□□□ -2.24
RNU4-54P-201ENST00000516428 FAM161AQ3B820 660 aa1.04□□□□□ -2.24
RNU4-54P-201ENST00000516428 PRRT3Q5FWE3 981 aa1.04□□□□□ -2.24
RNU4-54P-201ENST00000516428 WDR44Q5JSH3 913 aa1.04□□□□□ -2.24
RNU4-54P-201ENST00000516428 C6orf118Q5T5N4 469 aa1.04□□□□□ -2.24
RNU4-54P-201ENST00000516428 LYPD8Q6UX82 237 aa1.04□□□□□ -2.24
RNU4-54P-201ENST00000516428 GIGYF2Q6Y7W6 1299 aaKnown RBP1.04□□□□□ -2.24
RNU4-54P-201ENST00000516428 RNF19BQ6ZMZ0 732 aa1.04□□□□□ -2.24
RNU4-54P-201ENST00000516428 LYSMD3Q7Z3D4 306 aa1.04□□□□□ -2.24
RNU4-54P-201ENST00000516428 CYP2U1Q7Z449 544 aa1.04□□□□□ -2.24
RNU4-54P-201ENST00000516428 NBPF11Q86T75 865 aa1.04□□□□□ -2.24
RNU4-54P-201ENST00000516428 TRMT44Q8IYL2 757 aaKnown RBP1.04□□□□□ -2.24
RNU4-54P-201ENST00000516428 NBPF15Q8N660 670 aa1.04□□□□□ -2.24
RNU4-54P-201ENST00000516428 GOLGA6L1Q8N7Z2 621 aa1.04□□□□□ -2.24
RNU4-54P-201ENST00000516428 C1orf216Q8TAB5 229 aa1.04□□□□□ -2.24
RNU4-54P-201ENST00000516428 BAP1Q92560 729 aa1.04□□□□□ -2.24
RNU4-54P-201ENST00000516428 HPS1Q92902 700 aa1.04□□□□□ -2.24
RNU4-54P-201ENST00000516428 PCMTD1Q96MG8 357 aaPredicted RBP1.04□□□□□ -2.24
RNU4-54P-201ENST00000516428 ZFP42Q96MM3 310 aa1.04□□□□□ -2.24
RNU4-54P-201ENST00000516428 PURBQ96QR8 312 aaKnown RBP1.04□□□□□ -2.24
RNU4-54P-201ENST00000516428 TBC1D2Q9BYX2 928 aa1.04□□□□□ -2.24
RNU4-54P-201ENST00000516428 GOLGA2P5Q9HBQ8 144 aa1.04□□□□□ -2.24
RNU4-54P-201ENST00000516428 UTP3Q9NQZ2 479 aaKnown RBP eCLIP1.04□□□□□ -2.24
RNU4-54P-201ENST00000516428 FKBPLQ9UIM3 349 aa1.04□□□□□ -2.24
RNU4-54P-201ENST00000516428 A0A1B0GTH6 734 aa1.03□□□□□ -2.24
RNU4-54P-201ENST00000516428 ATP5J2-PTCD1G3V325 749 aa1.03□□□□□ -2.24
RNU4-54P-201ENST00000516428 BACH1O14867 736 aa1.03□□□□□ -2.24
RNU4-54P-201ENST00000516428 LZTS3O60299 673 aaPredicted RBP1.03□□□□□ -2.24
RNU4-54P-201ENST00000516428 APBA3O96018 575 aa1.03□□□□□ -2.24
RNU4-54P-201ENST00000516428 VSIG8P0DPA2 414 aa1.03□□□□□ -2.24
RNU4-54P-201ENST00000516428 TATP17735 454 aaPredicted RBP1.03□□□□□ -2.24
RNU4-54P-201ENST00000516428 MX2P20592 715 aa1.03□□□□□ -2.24
RNU4-54P-201ENST00000516428 ITGA6P23229 1130 aa1.03□□□□□ -2.24
RNU4-54P-201ENST00000516428 FSHRP23945 695 aa1.03□□□□□ -2.24
RNU4-54P-201ENST00000516428 SOX11P35716 441 aa1.03□□□□□ -2.24
RNU4-54P-201ENST00000516428 CLK2P49760 499 aaKnown RBP1.03□□□□□ -2.24
RNU4-54P-201ENST00000516428 RASSF7Q02833 373 aa1.03□□□□□ -2.24
RNU4-54P-201ENST00000516428 USP4Q13107 963 aa1.03□□□□□ -2.24
RNU4-54P-201ENST00000516428 CSPP1Q1MSJ5 1256 aa1.03□□□□□ -2.24
RNU4-54P-201ENST00000516428 NBPF1Q3BBV0 1214 aa1.03□□□□□ -2.24
RNU4-54P-201ENST00000516428 LINC01559Q495D7 138 aa1.03□□□□□ -2.24
RNU4-54P-201ENST00000516428 TMEM214Q6NUQ4 689 aaKnown RBP1.03□□□□□ -2.24
RNU4-54P-201ENST00000516428 RSBN1LQ6PCB5 846 aaPredicted RBP1.03□□□□□ -2.24
RNU4-54P-201ENST00000516428 RIPOR1Q6ZS17 1223 aa1.03□□□□□ -2.24
RNU4-54P-201ENST00000516428 BARGINQ6ZT62 677 aa1.03□□□□□ -2.24
RNU4-54P-201ENST00000516428 TAS1R3Q7RTX0 852 aa1.03□□□□□ -2.24
RNU4-54P-201ENST00000516428 C14orf37Q86TY3 774 aa1.03□□□□□ -2.24
RNU4-54P-201ENST00000516428 SLC51AQ86UW1 340 aa1.03□□□□□ -2.24
RNU4-54P-201ENST00000516428 MEIOBQ8N635 442 aa1.03□□□□□ -2.24
RNU4-54P-201ENST00000516428 SPIRE2Q8WWL2 714 aa1.03□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms