RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 VPS37DQ86XT2 251 aa15.21■□□□□ 0.03
USP53-209ENST00000514665 FAM177BA6PVY3 158 aa15.21■□□□□ 0.02
USP53-209ENST00000514665 PDCP20941 246 aa15.21■□□□□ 0.02
USP53-209ENST00000514665 TSR1Q2NL82 804 aaKnown RBP15.21■□□□□ 0.02
USP53-209ENST00000514665 URB2Q14146 1524 aaKnown RBP15.2■□□□□ 0.02
USP53-209ENST00000514665 TNNT3P45378 269 aaPredicted RBP15.2■□□□□ 0.02
USP53-209ENST00000514665 GOLGA6L1Q8N7Z2 621 aa15.2■□□□□ 0.02
USP53-209ENST00000514665 CIZ1Q9ULV3 898 aaPredicted RBP15.2■□□□□ 0.02
USP53-209ENST00000514665 THOC2Q8NI27 1593 aaKnown RBP15.2■□□□□ 0.02
USP53-209ENST00000514665 F6X3S4 739 aa15.2■□□□□ 0.02
USP53-209ENST00000514665 CUL7Q14999 1698 aa15.2■□□□□ 0.02
USP53-209ENST00000514665 CWC27Q6UX04 472 aaKnown RBP15.2■□□□□ 0.02
USP53-209ENST00000514665 ZNF608Q9ULD9 1512 aaPredicted RBP15.2■□□□□ 0.02
USP53-209ENST00000514665 TPM1P09493 284 aa15.19■□□□□ 0.02
USP53-209ENST00000514665 CCDC173Q0VFZ6 552 aa15.19■□□□□ 0.02
USP53-209ENST00000514665 SPC24Q8NBT2 197 aa15.19■□□□□ 0.02
USP53-209ENST00000514665 CYP46A1Q9Y6A2 500 aa15.19■□□□□ 0.02
USP53-209ENST00000514665 ESPNB1AK53 854 aa15.19■□□□□ 0.02
USP53-209ENST00000514665 MYL6BP14649 208 aa15.19■□□□□ 0.02
USP53-209ENST00000514665 GRIN2AQ12879 1464 aa15.19■□□□□ 0.02
USP53-209ENST00000514665 FBXO31Q5XUX0 539 aaPredicted RBP15.19■□□□□ 0.02
USP53-209ENST00000514665 NUTM1Q86Y26 1132 aa15.19■□□□□ 0.02
USP53-209ENST00000514665 RAD21O60216 631 aa15.18■□□□□ 0.02
USP53-209ENST00000514665 RBM10P98175 930 aaKnown RBP15.18■□□□□ 0.02
USP53-209ENST00000514665 XPCQ01831 940 aaPredicted RBP15.18■□□□□ 0.02
USP53-209ENST00000514665 PCDHB15Q9Y5E8 787 aa15.18■□□□□ 0.02
USP53-209ENST00000514665 WDR33Q9C0J8 1336 aaKnown RBP15.18■□□□□ 0.02
USP53-209ENST00000514665 SAFBQ15424 915 aaKnown RBP eCLIP15.17■□□□□ 0.02
USP53-209ENST00000514665 GPATCH8Q9UKJ3 1502 aaKnown RBP15.17■□□□□ 0.02
USP53-209ENST00000514665 PEG3Q9GZU2 1588 aa15.17■□□□□ 0.02
USP53-209ENST00000514665 FYB1O15117 783 aa15.17■□□□□ 0.02
USP53-209ENST00000514665 PROSER2Q86WR7 435 aaPredicted RBP15.17■□□□□ 0.02
USP53-209ENST00000514665 KINO60870 393 aaKnown RBP15.17■□□□□ 0.02
USP53-209ENST00000514665 NCBP3Q53F19 620 aaKnown RBP15.17■□□□□ 0.02
USP53-209ENST00000514665 AACSQ86V21 672 aa15.17■□□□□ 0.02
USP53-209ENST00000514665 ERC1Q8IUD2 1116 aa15.16■□□□□ 0.02
USP53-209ENST00000514665 BIVM-ERCC5R4GMW8 1640 aa15.16■□□□□ 0.02
USP53-209ENST00000514665 ERICH2A1L162 156 aa15.16■□□□□ 0.02
USP53-209ENST00000514665 DHX16O60231 1041 aaKnown RBP15.16■□□□□ 0.02
USP53-209ENST00000514665 LARP1BQ659C4 914 aaKnown RBP15.16■□□□□ 0.02
USP53-209ENST00000514665 DDX54Q8TDD1 881 aaKnown RBP15.16■□□□□ 0.02
USP53-209ENST00000514665 ZNF771Q7L3S4 317 aaPredicted RBP15.16■□□□□ 0.02
USP53-209ENST00000514665 ALDH1L2Q3SY69 923 aa15.16■□□□□ 0.02
USP53-209ENST00000514665 PCMTD1Q96MG8 357 aaPredicted RBP15.16■□□□□ 0.02
USP53-209ENST00000514665 JAKMIP1Q96N16 626 aaKnown RBP15.16■□□□□ 0.02
USP53-209ENST00000514665 THEMISQ8N1K5 641 aaPredicted RBP15.15■□□□□ 0.02
USP53-209ENST00000514665 A0A0U1RQG5 324 aaPredicted RBP15.14■□□□□ 0.01
USP53-209ENST00000514665 HIP1O00291 1037 aa15.14■□□□□ 0.01
USP53-209ENST00000514665 FERMT3Q86UX7 667 aa15.14■□□□□ 0.01
USP53-209ENST00000514665 SCAF11Q99590 1463 aaKnown RBP15.14■□□□□ 0.01
USP53-209ENST00000514665 FAM83GA6ND36 823 aa15.14■□□□□ 0.01
USP53-209ENST00000514665 SSFA2P28290 1259 aa15.14■□□□□ 0.01
USP53-209ENST00000514665 MTMR7Q9Y216 660 aa15.14■□□□□ 0.01
USP53-209ENST00000514665 BLOC1S2Q6QNY1 142 aa15.14■□□□□ 0.01
USP53-209ENST00000514665 TNNQ9UQP3 1299 aa15.14■□□□□ 0.01
USP53-209ENST00000514665 NOS1P29475 1434 aa15.14■□□□□ 0.01
USP53-209ENST00000514665 SYCE3A1L190 88 aa15.13■□□□□ 0.01
USP53-209ENST00000514665 TATP17735 454 aaPredicted RBP15.13■□□□□ 0.01
USP53-209ENST00000514665 HOOK1Q9UJC3 728 aaKnown RBP15.13■□□□□ 0.01
USP53-209ENST00000514665 ABCC11Q96J66 1382 aa15.13■□□□□ 0.01
USP53-209ENST00000514665 IPO7O95373 1038 aaKnown RBP15.13■□□□□ 0.01
USP53-209ENST00000514665 RBM42Q9BTD8 480 aaKnown RBP15.13■□□□□ 0.01
USP53-209ENST00000514665 STRN4Q9NRL3 753 aa15.13■□□□□ 0.01
USP53-209ENST00000514665 MX1P20591 662 aa15.13■□□□□ 0.01
USP53-209ENST00000514665 ZC3H6P61129 1189 aaKnown RBP15.13■□□□□ 0.01
USP53-209ENST00000514665 KRT85P78386 507 aa15.13■□□□□ 0.01
USP53-209ENST00000514665 USHBP1Q8N6Y0 703 aa15.13■□□□□ 0.01
USP53-209ENST00000514665 BTBD11A6QL63 1104 aa15.12■□□□□ 0.01
USP53-209ENST00000514665 RRP12Q5JTH9 1297 aaKnown RBP15.12■□□□□ 0.01
USP53-209ENST00000514665 ANKRD20A12PQ8NF67 263 aa15.12■□□□□ 0.01
USP53-209ENST00000514665 TESK2Q96S53 571 aa15.12■□□□□ 0.01
USP53-209ENST00000514665 C14orf93Q9H972 538 aaKnown RBP15.12■□□□□ 0.01
USP53-209ENST00000514665 LAMC3Q9Y6N6 1575 aa15.12■□□□□ 0.01
USP53-209ENST00000514665 GNAT3A8MTJ3 354 aa15.12■□□□□ 0.01
USP53-209ENST00000514665 STK38Q15208 465 aa15.12■□□□□ 0.01
USP53-209ENST00000514665 STK11IPQ8N1F8 1099 aa15.12■□□□□ 0.01
USP53-209ENST00000514665 TNPO1Q92973 898 aaKnown RBP15.12■□□□□ 0.01
USP53-209ENST00000514665 LETM1O95202 739 aaPredicted RBP15.12■□□□□ 0.01
USP53-209ENST00000514665 PDILTQ8N807 584 aa15.12■□□□□ 0.01
USP53-209ENST00000514665 MNS1Q8NEH6 495 aa15.11■□□□□ 0.01
USP53-209ENST00000514665 NAT10Q9H0A0 1025 aaKnown RBP15.11■□□□□ 0.01
USP53-209ENST00000514665 TBC1D32Q96NH3 1257 aa15.11■□□□□ 0.01
USP53-209ENST00000514665 NOL10Q9BSC4 688 aaKnown RBP15.11■□□□□ 0.01
USP53-209ENST00000514665 PDRG1Q9NUG6 133 aa15.11■□□□□ 0.01
USP53-209ENST00000514665 KIF14Q15058 1648 aa15.11■□□□□ 0.01
USP53-209ENST00000514665 CCDC192P0DO97 292 aa15.1■□□□□ 0.01
USP53-209ENST00000514665 TBC1D9Q6ZT07 1266 aa15.1■□□□□ 0.01
USP53-209ENST00000514665 SMC2O95347 1197 aa15.1■□□□□ 0.01
USP53-209ENST00000514665 ME1P48163 572 aa15.1■□□□□ 0.01
USP53-209ENST00000514665 CCDC85AQ96PX6 553 aaPredicted RBP15.1■□□□□ 0.01
USP53-209ENST00000514665 LARP6Q9BRS8 491 aaKnown RBP15.1■□□□□ 0.01
USP53-209ENST00000514665 TNMDQ9H2S6 317 aa15.1■□□□□ 0.01
USP53-209ENST00000514665 ADGRL1O94910 1474 aa15.1■□□□□ 0.01
USP53-209ENST00000514665 RBM33Q96EV2 1170 aaKnown RBP15.1■□□□□ 0.01
USP53-209ENST00000514665 CASTP20810 708 aaKnown RBP15.09■□□□□ 0.01
USP53-209ENST00000514665 TSHZ3Q63HK5 1081 aa15.09■□□□□ 0.01
USP53-209ENST00000514665 AMOTL1Q8IY63 956 aa15.09■□□□□ 0.01
USP53-209ENST00000514665 TBC1D2BQ9UPU7 963 aa15.09■□□□□ 0.01
USP53-209ENST00000514665 CD109Q6YHK3 1445 aa15.09■□□□□ 0.01
USP53-209ENST00000514665 CABP4P57796 275 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms