RNA–Protein interactions for RNA: ENST00000514335.1

NIPBL-208, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 2

Gene NIPBL, Length 2,948 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-208ENST00000514335 PUS10Q3MIT2 529 aaKnown RBP8.98□□□□□ -0.97
NIPBL-208ENST00000514335 DNAJC21Q5F1R6 531 aaKnown RBP8.98□□□□□ -0.97
NIPBL-208ENST00000514335 MYCBPQ99417 103 aaPredicted RBP8.98□□□□□ -0.97
NIPBL-208ENST00000514335 TMX4Q9H1E5 349 aaPredicted RBP8.98□□□□□ -0.97
NIPBL-208ENST00000514335 PTPN23Q9H3S7 1636 aa8.97□□□□□ -0.97
NIPBL-208ENST00000514335 UHRF1BP1Q6BDS2 1440 aa8.97□□□□□ -0.97
NIPBL-208ENST00000514335 ABCA6Q8N139 1617 aa8.97□□□□□ -0.97
NIPBL-208ENST00000514335 COQ9O75208 318 aa8.97□□□□□ -0.97
NIPBL-208ENST00000514335 CADPS2Q86UW7 1296 aa8.97□□□□□ -0.97
NIPBL-208ENST00000514335 IGSF5Q9NSI5 407 aa8.97□□□□□ -0.97
NIPBL-208ENST00000514335 TRAPPC8Q9Y2L5 1435 aa8.97□□□□□ -0.97
NIPBL-208ENST00000514335 CREB3O43889 395 aa8.96□□□□□ -0.97
NIPBL-208ENST00000514335 TTC30BQ8N4P2 665 aa8.96□□□□□ -0.97
NIPBL-208ENST00000514335 SH3BP5O60239 455 aa8.96□□□□□ -0.98
NIPBL-208ENST00000514335 CSB-PGBD3P0DP91 1061 aa8.96□□□□□ -0.98
NIPBL-208ENST00000514335 ARHGEF10LQ9HCE6 1279 aa8.96□□□□□ -0.98
NIPBL-208ENST00000514335 FEZ2Q9UHY8 353 aaPredicted RBP8.96□□□□□ -0.98
NIPBL-208ENST00000514335 NCOA2Q15596 1464 aa8.96□□□□□ -0.98
NIPBL-208ENST00000514335 RTEL1-TNFRSF6BF6WH68 1400 aa8.95□□□□□ -0.98
NIPBL-208ENST00000514335 GOLGA6L3A6NEY3 463 aa8.95□□□□□ -0.98
NIPBL-208ENST00000514335 GIMAP6Q6P9H5 292 aa8.95□□□□□ -0.98
NIPBL-208ENST00000514335 ILDR2Q71H61 639 aa8.95□□□□□ -0.98
NIPBL-208ENST00000514335 HIRIP3Q9BW71 556 aaPredicted RBP8.95□□□□□ -0.98
NIPBL-208ENST00000514335 TNNT1P13805 278 aa8.95□□□□□ -0.98
NIPBL-208ENST00000514335 LMOD2Q6P5Q4 547 aa8.94□□□□□ -0.98
NIPBL-208ENST00000514335 HELBQ8NG08 1087 aaPredicted RBP8.94□□□□□ -0.98
NIPBL-208ENST00000514335 CERKQ8TCT0 537 aa8.94□□□□□ -0.98
NIPBL-208ENST00000514335 PMM1Q92871 262 aa8.94□□□□□ -0.98
NIPBL-208ENST00000514335 ARPC5LQ9BPX5 153 aa8.94□□□□□ -0.98
NIPBL-208ENST00000514335 SMC4Q9NTJ3 1288 aa8.94□□□□□ -0.98
NIPBL-208ENST00000514335 RBM28Q9NW13 759 aaKnown RBP8.94□□□□□ -0.98
NIPBL-208ENST00000514335 PUF60Q9UHX1 559 aaKnown RBP8.94□□□□□ -0.98
NIPBL-208ENST00000514335 DISP3Q9P2K9 1392 aa8.94□□□□□ -0.98
NIPBL-208ENST00000514335 ZNF853P0CG23 659 aa8.94□□□□□ -0.98
NIPBL-208ENST00000514335 CALRP27797 417 aaKnown RBP8.94□□□□□ -0.98
NIPBL-208ENST00000514335 RIPK4P57078 832 aa8.94□□□□□ -0.98
NIPBL-208ENST00000514335 HDGFL1Q5TGJ6 251 aa8.94□□□□□ -0.98
NIPBL-208ENST00000514335 FMN1Q68DA7 1419 aa8.94□□□□□ -0.98
NIPBL-208ENST00000514335 LRRC9Q6ZRR7 1453 aa8.94□□□□□ -0.98
NIPBL-208ENST00000514335 BIRC2Q13490 618 aa8.94□□□□□ -0.98
NIPBL-208ENST00000514335 MAF1Q9H063 256 aa8.94□□□□□ -0.98
NIPBL-208ENST00000514335 CACTIN-AS1Q8N1I8 211 aa8.93□□□□□ -0.98
NIPBL-208ENST00000514335 KIDINS220Q9ULH0 1771 aa8.93□□□□□ -0.98
NIPBL-208ENST00000514335 ABCC3O15438 1527 aa8.93□□□□□ -0.98
NIPBL-208ENST00000514335 IGHDP01880 384 aa8.93□□□□□ -0.98
NIPBL-208ENST00000514335 NCAPGQ9BPX3 1015 aa8.93□□□□□ -0.98
NIPBL-208ENST00000514335 PAIP2Q9BPZ3 127 aaKnown RBP8.93□□□□□ -0.98
NIPBL-208ENST00000514335 KIF16BQ96L93 1317 aa8.93□□□□□ -0.98
NIPBL-208ENST00000514335 CDC42BPBQ9Y5S2 1711 aa8.92□□□□□ -0.98
NIPBL-208ENST00000514335 CEP170BQ9Y4F5 1589 aaPredicted RBP8.92□□□□□ -0.98
NIPBL-208ENST00000514335 SMAPO00193 183 aa8.92□□□□□ -0.98
NIPBL-208ENST00000514335 BDNFP23560 247 aa8.92□□□□□ -0.98
NIPBL-208ENST00000514335 PES1O00541 588 aaKnown RBP8.92□□□□□ -0.98
NIPBL-208ENST00000514335 NAP1L1P55209 391 aaKnown RBP8.92□□□□□ -0.98
NIPBL-208ENST00000514335 TTC30AQ86WT1 665 aa8.92□□□□□ -0.98
NIPBL-208ENST00000514335 GPATCH3Q96I76 525 aa8.92□□□□□ -0.98
NIPBL-208ENST00000514335 GABBR1Q9UBS5 961 aa8.92□□□□□ -0.98
NIPBL-208ENST00000514335 ANAPC4Q9UJX5 808 aa8.92□□□□□ -0.98
NIPBL-208ENST00000514335 A2ML1A8K2U0 1454 aa8.91□□□□□ -0.98
NIPBL-208ENST00000514335 NLRP1Q9C000 1473 aa8.91□□□□□ -0.98
NIPBL-208ENST00000514335 ERICH4A6NGS2 130 aa8.91□□□□□ -0.98
NIPBL-208ENST00000514335 EXOC5O00471 708 aa8.91□□□□□ -0.98
NIPBL-208ENST00000514335 STK10O94804 968 aaKnown RBP8.91□□□□□ -0.98
NIPBL-208ENST00000514335 NAT2P11245 290 aa8.91□□□□□ -0.98
NIPBL-208ENST00000514335 SKILP12757 684 aa8.91□□□□□ -0.98
NIPBL-208ENST00000514335 APLP1P51693 650 aa8.91□□□□□ -0.98
NIPBL-208ENST00000514335 PTPRKQ15262 1439 aa8.91□□□□□ -0.98
NIPBL-208ENST00000514335 RPAINQ86UA6 219 aa8.91□□□□□ -0.98
NIPBL-208ENST00000514335 CLUAP1Q96AJ1 413 aa8.91□□□□□ -0.98
NIPBL-208ENST00000514335 NRBP1Q9UHY1 535 aa8.91□□□□□ -0.98
NIPBL-208ENST00000514335 ARHGEF5Q12774 1597 aa8.91□□□□□ -0.98
NIPBL-208ENST00000514335 NWD1Q149M9 1564 aa8.91□□□□□ -0.98
NIPBL-208ENST00000514335 CCDC189A1A4V9 331 aa8.91□□□□□ -0.98
NIPBL-208ENST00000514335 EFCC1Q9HA90 598 aa8.91□□□□□ -0.98
NIPBL-208ENST00000514335 PHF8Q9UPP1 1060 aa8.91□□□□□ -0.98
NIPBL-208ENST00000514335 MED1Q15648 1581 aaPredicted RBP8.9□□□□□ -0.98
NIPBL-208ENST00000514335 PARNO95453 639 aaKnown RBP8.9□□□□□ -0.98
NIPBL-208ENST00000514335 PDE6BP35913 854 aa8.9□□□□□ -0.98
NIPBL-208ENST00000514335 NBPF3Q9H094 633 aa8.9□□□□□ -0.98
NIPBL-208ENST00000514335 PPP1R1BQ9UD71 204 aaPredicted RBP8.9□□□□□ -0.98
NIPBL-208ENST00000514335 IFNLR1Q8IU57 520 aaPredicted RBP8.9□□□□□ -0.99
NIPBL-208ENST00000514335 SPOCK3Q9BQ16 436 aa8.9□□□□□ -0.99
NIPBL-208ENST00000514335 IRF2BPLQ9H1B7 796 aa8.9□□□□□ -0.99
NIPBL-208ENST00000514335 CDK13Q14004 1512 aaKnown RBP8.9□□□□□ -0.99
NIPBL-208ENST00000514335 LMNB1P20700 586 aa8.89□□□□□ -0.99
NIPBL-208ENST00000514335 FAM210AQ96ND0 272 aa8.89□□□□□ -0.99
NIPBL-208ENST00000514335 SUPT6HQ7KZ85 1726 aaKnown RBP8.89□□□□□ -0.99
NIPBL-208ENST00000514335 CLIP1P30622 1438 aa8.89□□□□□ -0.99
NIPBL-208ENST00000514335 NCOA3Q9Y6Q9 1424 aa8.89□□□□□ -0.99
NIPBL-208ENST00000514335 ESPNB1AK53 854 aa8.89□□□□□ -0.99
NIPBL-208ENST00000514335 WDR78Q5VTH9 848 aa8.89□□□□□ -0.99
NIPBL-208ENST00000514335 KIAA1211Q6ZU35 1233 aa8.89□□□□□ -0.99
NIPBL-208ENST00000514335 DONSONQ9NYP3 566 aa8.89□□□□□ -0.99
NIPBL-208ENST00000514335 CEP126Q9P2H0 1117 aa8.89□□□□□ -0.99
NIPBL-208ENST00000514335 PDZRN3Q9UPQ7 1066 aa8.89□□□□□ -0.99
NIPBL-208ENST00000514335 CDK12Q9NYV4 1490 aaPredicted RBP8.88□□□□□ -0.99
NIPBL-208ENST00000514335 TROQ12816 1431 aaPredicted RBP8.88□□□□□ -0.99
NIPBL-208ENST00000514335 KLHL33A6NCF5 533 aa8.88□□□□□ -0.99
NIPBL-208ENST00000514335 KCNA1Q09470 495 aa8.88□□□□□ -0.99
NIPBL-208ENST00000514335 NYAP1Q6ZVC0 841 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms