RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 MTMR7Q9Y216 660 aa12.8□□□□□ -0.36
NUP54-215ENST00000514313 ZBTB33Q86T24 672 aa12.79□□□□□ -0.36
NUP54-215ENST00000514313 CHIC2Q9UKJ5 165 aa12.79□□□□□ -0.36
NUP54-215ENST00000514313 CARD14Q9BXL6 1004 aa12.78□□□□□ -0.36
NUP54-215ENST00000514313 POTEMA6NI47 508 aa12.77□□□□□ -0.37
NUP54-215ENST00000514313 PTK7Q13308 1070 aa12.77□□□□□ -0.37
NUP54-215ENST00000514313 ZNF516Q92618 1163 aa12.77□□□□□ -0.37
NUP54-215ENST00000514313 SLC6A16Q9GZN6 736 aa12.77□□□□□ -0.37
NUP54-215ENST00000514313 MAGEB6P1A0A0J9YX57 407 aa12.76□□□□□ -0.37
NUP54-215ENST00000514313 ATP5J2-PTCD1G3V325 749 aa12.76□□□□□ -0.37
NUP54-215ENST00000514313 RASA1P20936 1047 aa12.76□□□□□ -0.37
NUP54-215ENST00000514313 B4GALNT3Q6L9W6 998 aa12.76□□□□□ -0.37
NUP54-215ENST00000514313 LARP1Q6PKG0 1096 aaKnown RBP12.76□□□□□ -0.37
NUP54-215ENST00000514313 TRAF7Q6Q0C0 670 aa12.76□□□□□ -0.37
NUP54-215ENST00000514313 SH3RF1Q7Z6J0 888 aa12.76□□□□□ -0.37
NUP54-215ENST00000514313 EML3Q32P44 896 aa12.75□□□□□ -0.37
NUP54-215ENST00000514313 TJAP1Q5JTD0 557 aa12.75□□□□□ -0.37
NUP54-215ENST00000514313 DZIP3Q86Y13 1208 aaKnown RBP12.75□□□□□ -0.37
NUP54-215ENST00000514313 IL21Q9HBE4 155 aa12.75□□□□□ -0.37
NUP54-215ENST00000514313 LZTS3O60299 673 aaPredicted RBP12.74□□□□□ -0.37
NUP54-215ENST00000514313 MAP7D1Q3KQU3 841 aa12.74□□□□□ -0.37
NUP54-215ENST00000514313 TSGA10IPQ3SY00 556 aa12.74□□□□□ -0.37
NUP54-215ENST00000514313 MYT1LQ9UL68 1186 aa12.74□□□□□ -0.37
NUP54-215ENST00000514313 PTPN5P54829 565 aa12.73□□□□□ -0.37
NUP54-215ENST00000514313 LINC01559Q495D7 138 aa12.73□□□□□ -0.37
NUP54-215ENST00000514313 POTEGQ6S5H5 508 aa12.73□□□□□ -0.37
NUP54-215ENST00000514313 SND1Q7KZF4 910 aaKnown RBP eCLIP12.73□□□□□ -0.37
NUP54-215ENST00000514313 SLAIN2Q9P270 581 aa12.73□□□□□ -0.37
NUP54-215ENST00000514313 GNEQ9Y223 722 aaKnown RBP12.73□□□□□ -0.37
NUP54-215ENST00000514313 FOXD4L5Q5VV16 416 aaPredicted RBP12.72□□□□□ -0.37
NUP54-215ENST00000514313 FOXD4L4Q8WXT5 416 aaPredicted RBP12.72□□□□□ -0.37
NUP54-215ENST00000514313 BAP1Q92560 729 aa12.72□□□□□ -0.37
NUP54-215ENST00000514313 FOXJ1Q92949 421 aa12.72□□□□□ -0.37
NUP54-215ENST00000514313 CCDC85AQ96PX6 553 aaPredicted RBP12.72□□□□□ -0.37
NUP54-215ENST00000514313 CLDN10P78369 228 aa12.71□□□□□ -0.37
NUP54-215ENST00000514313 ERFEQ4G0M1 354 aa12.71□□□□□ -0.37
NUP54-215ENST00000514313 PHLDB3Q6NSJ2 640 aa12.71□□□□□ -0.37
NUP54-215ENST00000514313 ANKMY2Q8IV38 441 aa12.71□□□□□ -0.37
NUP54-215ENST00000514313 OGFOD1Q8N543 542 aa12.71□□□□□ -0.37
NUP54-215ENST00000514313 FAM200AQ8TCP9 573 aa12.71□□□□□ -0.37
NUP54-215ENST00000514313 DOLKQ9UPQ8 538 aa12.71□□□□□ -0.37
NUP54-215ENST00000514313 FCF1Q9Y324 198 aaKnown RBP12.71□□□□□ -0.37
NUP54-215ENST00000514313 S1PR4O95977 384 aa12.7□□□□□ -0.38
NUP54-215ENST00000514313 FAM69CQ0P6D2 419 aa12.7□□□□□ -0.38
NUP54-215ENST00000514313 C4orf48Q5BLP8 95 aa12.7□□□□□ -0.38
NUP54-215ENST00000514313 DPYDQ12882 1025 aa12.69□□□□□ -0.38
NUP54-215ENST00000514313 BPHLQ86WA6 291 aaPredicted RBP12.69□□□□□ -0.38
NUP54-215ENST00000514313 ZNF511Q8NB15 262 aa12.69□□□□□ -0.38
NUP54-215ENST00000514313 NKX2-3Q8TAU0 364 aa12.69□□□□□ -0.38
NUP54-215ENST00000514313 ZNF594Q96JF6 807 aaPredicted RBP12.69□□□□□ -0.38
NUP54-215ENST00000514313 GIGYF1O75420 1035 aaPredicted RBP12.68□□□□□ -0.38
NUP54-215ENST00000514313 AGERQ15109 404 aa12.68□□□□□ -0.38
NUP54-215ENST00000514313 CCDC27Q2M243 656 aa12.68□□□□□ -0.38
NUP54-215ENST00000514313 OXLD1Q5BKU9 147 aa12.68□□□□□ -0.38
NUP54-215ENST00000514313 CLP1Q92989 425 aaKnown RBP12.68□□□□□ -0.38
NUP54-215ENST00000514313 CDCA7Q9BWT1 371 aaPredicted RBP12.68□□□□□ -0.38
NUP54-215ENST00000514313 NOD1Q9Y239 953 aa12.68□□□□□ -0.38
NUP54-215ENST00000514313 SSFA2P28290 1259 aa12.67□□□□□ -0.38
NUP54-215ENST00000514313 TXNDC2Q86VQ3 553 aa12.67□□□□□ -0.38
NUP54-215ENST00000514313 TRIM50Q86XT4 487 aa12.67□□□□□ -0.38
NUP54-215ENST00000514313 DNAAF2Q9NVR5 837 aaKnown RBP12.67□□□□□ -0.38
NUP54-215ENST00000514313 KIAA1024Q9UPX6 916 aa12.67□□□□□ -0.38
NUP54-215ENST00000514313 ATP1A2P50993 1020 aa12.66□□□□□ -0.38
NUP54-215ENST00000514313 SLC10A4Q96EP9 437 aa12.66□□□□□ -0.38
NUP54-215ENST00000514313 CCER1Q8TC90 406 aaPredicted RBP12.64□□□□□ -0.39
NUP54-215ENST00000514313 C1QTNF2Q9BXJ5 285 aa12.64□□□□□ -0.39
NUP54-215ENST00000514313 DKK1O94907 266 aa12.63□□□□□ -0.39
NUP54-215ENST00000514313 GTF2IP78347 998 aa12.63□□□□□ -0.39
NUP54-215ENST00000514313 SIX5Q8N196 739 aa12.63□□□□□ -0.39
NUP54-215ENST00000514313 LARGE2Q8N3Y3 721 aa12.63□□□□□ -0.39
NUP54-215ENST00000514313 ATP2B4P23634 1241 aa12.62□□□□□ -0.39
NUP54-215ENST00000514313 SWI5Q1ZZU3 235 aa12.62□□□□□ -0.39
NUP54-215ENST00000514313 ZBTB7BO15156 539 aaPredicted RBP12.61□□□□□ -0.39
NUP54-215ENST00000514313 NBPF20Q3BBV1 942 aa12.61□□□□□ -0.39
NUP54-215ENST00000514313 RNF20Q5VTR2 975 aa12.61□□□□□ -0.39
NUP54-215ENST00000514313 ZNF428Q96B54 188 aa12.61□□□□□ -0.39
NUP54-215ENST00000514313 ESPNB1AK53 854 aa12.6□□□□□ -0.39
NUP54-215ENST00000514313 SH3BP2P78314 561 aa12.6□□□□□ -0.39
NUP54-215ENST00000514313 ARID4AP29374 1257 aaPredicted RBP12.59□□□□□ -0.39
NUP54-215ENST00000514313 TRMT44Q8IYL2 757 aaKnown RBP12.59□□□□□ -0.39
NUP54-215ENST00000514313 PCDHB11Q9Y5F2 797 aa12.59□□□□□ -0.39
NUP54-215ENST00000514313 PPEF1O14829 653 aaPredicted RBP12.57□□□□□ -0.4
NUP54-215ENST00000514313 SCNN1AP37088 669 aa12.57□□□□□ -0.4
NUP54-215ENST00000514313 RBM25P49756 843 aaKnown RBP12.57□□□□□ -0.4
NUP54-215ENST00000514313 CCDC102BQ68D86 513 aa12.57□□□□□ -0.4
NUP54-215ENST00000514313 PCDH10Q9P2E7 1040 aa12.57□□□□□ -0.4
NUP54-215ENST00000514313 PCDHGA11Q9Y5H2 935 aa12.57□□□□□ -0.4
NUP54-215ENST00000514313 SERPINB4P48594 390 aa12.56□□□□□ -0.4
NUP54-215ENST00000514313 SEC13P55735 322 aa12.56□□□□□ -0.4
NUP54-215ENST00000514313 TPCN2Q8NHX9 752 aa12.56□□□□□ -0.4
NUP54-215ENST00000514313 SFI1A8K8P3 1242 aa12.55□□□□□ -0.4
NUP54-215ENST00000514313 PRMT3O60678 531 aa12.55□□□□□ -0.4
NUP54-215ENST00000514313 PSME1Q06323 249 aa12.55□□□□□ -0.4
NUP54-215ENST00000514313 SEPT12Q8IYM1 358 aa12.55□□□□□ -0.4
NUP54-215ENST00000514313 CDV3Q9UKY7 258 aaKnown RBP12.55□□□□□ -0.4
NUP54-215ENST00000514313 RAB15P59190 212 aa12.53□□□□□ -0.4
NUP54-215ENST00000514313 RBM19Q9Y4C8 960 aaKnown RBP12.53□□□□□ -0.4
NUP54-215ENST00000514313 SOWAHDA6NJG2 315 aa12.52□□□□□ -0.41
NUP54-215ENST00000514313 TRIM32Q13049 653 aa12.52□□□□□ -0.41
NUP54-215ENST00000514313 USP4Q13107 963 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms