RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 GPKOWQ92917 476 aaPredicted RBP eCLIP8.05□□□□□ -1.121e-10■■■□□ 14.7
NUP54-212ENST00000513248 SOS2Q07890 1332 aaPredicted RBP8.04□□□□□ -1.12
NUP54-212ENST00000513248 NISCHQ9Y2I1 1504 aa8.04□□□□□ -1.12
NUP54-212ENST00000513248 PPFIA3O75145 1194 aa8.04□□□□□ -1.12
NUP54-212ENST00000513248 RTL5Q5HYW3 569 aaPredicted RBP8.04□□□□□ -1.12
NUP54-212ENST00000513248 HELBQ8NG08 1087 aaPredicted RBP8.04□□□□□ -1.12
NUP54-212ENST00000513248 EMILIN1Q9Y6C2 1016 aa8.04□□□□□ -1.12
NUP54-212ENST00000513248 FSHRP23945 695 aa8.03□□□□□ -1.12
NUP54-212ENST00000513248 TSEN34Q9BSV6 310 aaKnown RBP8.03□□□□□ -1.12
NUP54-212ENST00000513248 VASH1Q7L8A9 365 aaPredicted RBP8.02□□□□□ -1.13
NUP54-212ENST00000513248 TSC1Q92574 1164 aa8.02□□□□□ -1.13
NUP54-212ENST00000513248 PCMTD1Q96MG8 357 aaPredicted RBP8.02□□□□□ -1.13
NUP54-212ENST00000513248 CCDC116Q8IYX3 515 aa8.01□□□□□ -1.13
NUP54-212ENST00000513248 DNMT3LQ9UJW3 386 aa8.01□□□□□ -1.13
NUP54-212ENST00000513248 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8□□□□□ -1.13
NUP54-212ENST00000513248 KCNMA1Q12791 1236 aa7.98□□□□□ -1.13
NUP54-212ENST00000513248 MAGEB6P1A0A0J9YX57 407 aa7.97□□□□□ -1.13
NUP54-212ENST00000513248 TTLL8A6PVC2 850 aa7.97□□□□□ -1.13
NUP54-212ENST00000513248 ERFEQ4G0M1 354 aa7.97□□□□□ -1.13
NUP54-212ENST00000513248 Q6ZVU0 165 aa7.97□□□□□ -1.13
NUP54-212ENST00000513248 PGPEP1Q9NXJ5 209 aa7.97□□□□□ -1.13
NUP54-212ENST00000513248 CDV3Q9UKY7 258 aaKnown RBP7.97□□□□□ -1.13
NUP54-212ENST00000513248 PDXDC2PQ6P474 469 aa7.96□□□□□ -1.14
NUP54-212ENST00000513248 NANOS1Q8WY41 292 aaKnown RBP7.96□□□□□ -1.14
NUP54-212ENST00000513248 SPINT1O43278 529 aa7.95□□□□□ -1.14
NUP54-212ENST00000513248 RFC5P40937 340 aa7.95□□□□□ -1.14
NUP54-212ENST00000513248 PPP1R26Q5T8A7 1209 aaPredicted RBP7.95□□□□□ -1.14
NUP54-212ENST00000513248 ZC3H4Q9UPT8 1303 aaKnown RBP7.95□□□□□ -1.14
NUP54-212ENST00000513248 LOC100996750A0A140TA64 210 aa7.94□□□□□ -1.14
NUP54-212ENST00000513248 AP1G2O75843 785 aa7.94□□□□□ -1.14
NUP54-212ENST00000513248 PTSQ03393 145 aa7.94□□□□□ -1.14
NUP54-212ENST00000513248 CTDSPL2Q05D32 466 aa7.94□□□□□ -1.14
NUP54-212ENST00000513248 DHX9Q08211 1270 aaKnown RBP7.94□□□□□ -1.14
NUP54-212ENST00000513248 CARD14Q9BXL6 1004 aa7.94□□□□□ -1.14
NUP54-212ENST00000513248 KRTAP4-6Q9BYQ5 205 aa7.94□□□□□ -1.14
NUP54-212ENST00000513248 GSK3AP49840 483 aa7.93□□□□□ -1.14
NUP54-212ENST00000513248 KRT76Q01546 638 aa7.93□□□□□ -1.14
NUP54-212ENST00000513248 ARHGAP9Q9BRR9 750 aa7.93□□□□□ -1.14
NUP54-212ENST00000513248 FKBPLQ9UIM3 349 aa7.93□□□□□ -1.14
NUP54-212ENST00000513248 RNF225M0QZC1 329 aaPredicted RBP7.92□□□□□ -1.14
NUP54-212ENST00000513248 LRRN4Q8WUT4 740 aa7.92□□□□□ -1.14
NUP54-212ENST00000513248 SLC10A4Q96EP9 437 aa7.92□□□□□ -1.14
NUP54-212ENST00000513248 GTF3C3Q9Y5Q9 886 aa7.92□□□□□ -1.14
NUP54-212ENST00000513248 USP17L8P0C7I0 530 aa7.91□□□□□ -1.14
NUP54-212ENST00000513248 GPR161Q8N6U8 529 aaKnown RBP7.91□□□□□ -1.14
NUP54-212ENST00000513248 BANK1Q8NDB2 785 aa7.91□□□□□ -1.14
NUP54-212ENST00000513248 KCTD15Q96SI1 283 aaPredicted RBP7.91□□□□□ -1.14
NUP54-212ENST00000513248 GPSM3Q9Y4H4 160 aa7.91□□□□□ -1.14
NUP54-212ENST00000513248 SOCS7O14512 581 aa7.9□□□□□ -1.14
NUP54-212ENST00000513248 TMEM259Q4ZIN3 620 aa7.9□□□□□ -1.14
NUP54-212ENST00000513248 CCDC155Q8N6L0 562 aa7.9□□□□□ -1.14
NUP54-212ENST00000513248 CNTNAP3BQ96NU0 1288 aa7.9□□□□□ -1.14
NUP54-212ENST00000513248 CNTNAP3Q9BZ76 1288 aa7.9□□□□□ -1.14
NUP54-212ENST00000513248 SLC35F4A4IF30 521 aa7.89□□□□□ -1.15
NUP54-212ENST00000513248 CBLBQ13191 982 aa7.89□□□□□ -1.15
NUP54-212ENST00000513248 COL25A1Q9BXS0 654 aaPredicted RBP7.89□□□□□ -1.15
NUP54-212ENST00000513248 SLURP2P0DP57 97 aa7.88□□□□□ -1.15
NUP54-212ENST00000513248 ZBTB33Q86T24 672 aa7.88□□□□□ -1.15
NUP54-212ENST00000513248 ADAMTS8Q9UP79 889 aa7.88□□□□□ -1.15
NUP54-212ENST00000513248 FIGNL2A6NMB9 653 aa7.87□□□□□ -1.15
NUP54-212ENST00000513248 ITGA6P23229 1130 aa7.87□□□□□ -1.15
NUP54-212ENST00000513248 PTK2Q05397 1052 aa7.87□□□□□ -1.15
NUP54-212ENST00000513248 INTS6LQ5JSJ4 861 aaKnown RBP7.87□□□□□ -1.15
NUP54-212ENST00000513248 TMEM151AQ8N4L1 468 aa7.87□□□□□ -1.15
NUP54-212ENST00000513248 HMX1Q9NP08 348 aaPredicted RBP7.87□□□□□ -1.15
NUP54-212ENST00000513248 RASSF7Q02833 373 aa7.86□□□□□ -1.15
NUP54-212ENST00000513248 NR6A1Q15406 480 aa7.86□□□□□ -1.15
NUP54-212ENST00000513248 NBPF20Q3BBV1 942 aa7.86□□□□□ -1.15
NUP54-212ENST00000513248 GDF11O95390 407 aa7.85□□□□□ -1.15
NUP54-212ENST00000513248 MCM6Q14566 821 aa7.85□□□□□ -1.15
NUP54-212ENST00000513248 RNFT1Q5M7Z0 435 aa7.85□□□□□ -1.15
NUP54-212ENST00000513248 ZNF385CQ66K41 422 aaPredicted RBP7.85□□□□□ -1.15
NUP54-212ENST00000513248 KCTD17Q8N5Z5 321 aa7.85□□□□□ -1.15
NUP54-212ENST00000513248 OCSTAMPQ9BR26 566 aa7.85□□□□□ -1.15
NUP54-212ENST00000513248 CTSOP43234 321 aaPredicted RBP7.84□□□□□ -1.15
NUP54-212ENST00000513248 SUZ12Q15022 739 aaKnown RBP7.84□□□□□ -1.15
NUP54-212ENST00000513248 SV2AQ7L0J3 742 aa7.84□□□□□ -1.15
NUP54-212ENST00000513248 MTMR14Q8NCE2 650 aa7.84□□□□□ -1.15
NUP54-212ENST00000513248 PNMA1Q8ND90 353 aa7.84□□□□□ -1.15
NUP54-212ENST00000513248 GJD4Q96KN9 370 aaPredicted RBP7.84□□□□□ -1.15
NUP54-212ENST00000513248 SNRKQ9NRH2 765 aa7.84□□□□□ -1.15
NUP54-212ENST00000513248 RELBQ01201 579 aa7.83□□□□□ -1.16
NUP54-212ENST00000513248 SVOPQ8N4V2 548 aa7.83□□□□□ -1.16
NUP54-212ENST00000513248 ADAM32Q8TC27 787 aa7.83□□□□□ -1.16
NUP54-212ENST00000513248 RNF217Q8TC41 542 aa7.83□□□□□ -1.16
NUP54-212ENST00000513248 EPS8L1Q8TE68 723 aa7.83□□□□□ -1.16
NUP54-212ENST00000513248 AGBL1Q96MI9 1066 aa7.83□□□□□ -1.16
NUP54-212ENST00000513248 INSM2Q96T92 566 aaPredicted RBP7.83□□□□□ -1.16
NUP54-212ENST00000513248 TRIM34Q9BYJ4 488 aa7.83□□□□□ -1.16
NUP54-212ENST00000513248 GPR37L1O60883 481 aa7.82□□□□□ -1.16
NUP54-212ENST00000513248 ARHGEF15O94989 841 aa7.82□□□□□ -1.16
NUP54-212ENST00000513248 FLIIQ13045 1269 aa7.82□□□□□ -1.16
NUP54-212ENST00000513248 VWA5B2Q8N398 1253 aa7.82□□□□□ -1.16
NUP54-212ENST00000513248 TRIM52Q96A61 297 aa7.82□□□□□ -1.16
NUP54-212ENST00000513248 SENP3-EIF4A1A0A087X0R7 540 aa7.81□□□□□ -1.16
NUP54-212ENST00000513248 ADH1AP07327 375 aa7.81□□□□□ -1.16
NUP54-212ENST00000513248 POLMQ9NP87 494 aaPredicted RBP7.81□□□□□ -1.16
NUP54-212ENST00000513248 CDC14CA4D256 554 aa7.8□□□□□ -1.16
NUP54-212ENST00000513248 ZNF784Q8NCA9 323 aaPredicted RBP7.8□□□□□ -1.16
NUP54-212ENST00000513248 DNMT3AQ9Y6K1 912 aaPredicted RBP7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms