RNA–Protein interactions for RNA: ENST00000512275.5

RFC1-213, Transcript of replication factor C subunit 1, humanhuman

TSL 3

Gene RFC1, Length 841 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-213ENST00000512275 S1PR4O95977 384 aa11.31□□□□□ -0.6
RFC1-213ENST00000512275 RFX1P22670 979 aa11.31□□□□□ -0.6
RFC1-213ENST00000512275 EIF4G2P78344 907 aaKnown RBP eCLIP11.31□□□□□ -0.6
RFC1-213ENST00000512275 SEMA3FQ13275 785 aa11.31□□□□□ -0.6
RFC1-213ENST00000512275 TFIP11Q9UBB9 837 aaKnown RBP11.31□□□□□ -0.6
RFC1-213ENST00000512275 PDZRN3Q9UPQ7 1066 aa11.31□□□□□ -0.6
RFC1-213ENST00000512275 EEA1Q15075 1411 aa11.31□□□□□ -0.6
RFC1-213ENST00000512275 KIF27Q86VH2 1401 aa11.31□□□□□ -0.6
RFC1-213ENST00000512275 ZBBXA8MT70 800 aa11.3□□□□□ -0.6
RFC1-213ENST00000512275 DXOO77932 396 aaKnown RBP11.3□□□□□ -0.6
RFC1-213ENST00000512275 ADH1BP00325 375 aa11.3□□□□□ -0.6
RFC1-213ENST00000512275 EMID1Q96A84 441 aaPredicted RBP11.3□□□□□ -0.6
RFC1-213ENST00000512275 MAFBQ9Y5Q3 323 aaPredicted RBP11.3□□□□□ -0.6
RFC1-213ENST00000512275 IFT140Q96RY7 1462 aa11.3□□□□□ -0.6
RFC1-213ENST00000512275 PPEF1O14829 653 aaPredicted RBP11.29□□□□□ -0.6
RFC1-213ENST00000512275 SLC19A1P41440 591 aa11.29□□□□□ -0.6
RFC1-213ENST00000512275 TRAF7Q6Q0C0 670 aa11.29□□□□□ -0.6
RFC1-213ENST00000512275 FAM160A2Q8N612 972 aaPredicted RBP11.29□□□□□ -0.6
RFC1-213ENST00000512275 ANKLE1Q8NAG6 615 aa11.29□□□□□ -0.6
RFC1-213ENST00000512275 USTQ9Y2C2 406 aa11.29□□□□□ -0.6
RFC1-213ENST00000512275 EIF4G3O43432 1585 aaKnown RBP11.28□□□□□ -0.6
RFC1-213ENST00000512275 LMOD1P29536 600 aaPredicted RBP11.28□□□□□ -0.6
RFC1-213ENST00000512275 PDE4CQ08493 712 aa11.28□□□□□ -0.6
RFC1-213ENST00000512275 TBC1D9Q6ZT07 1266 aa11.28□□□□□ -0.6
RFC1-213ENST00000512275 MMP16P51512 607 aa11.27□□□□□ -0.61
RFC1-213ENST00000512275 ZNF608Q9ULD9 1512 aaPredicted RBP11.26□□□□□ -0.61
RFC1-213ENST00000512275 TDRD9Q8NDG6 1382 aaKnown RBP11.26□□□□□ -0.61
RFC1-213ENST00000512275 KIF21BO75037 1637 aa11.25□□□□□ -0.61
RFC1-213ENST00000512275 ATP9BO43861 1147 aa11.25□□□□□ -0.61
RFC1-213ENST00000512275 CCNYL3P0C7X3 344 aa11.25□□□□□ -0.61
RFC1-213ENST00000512275 SPSB2Q99619 263 aa11.25□□□□□ -0.61
RFC1-213ENST00000512275 SLC6A16Q9GZN6 736 aa11.25□□□□□ -0.61
RFC1-213ENST00000512275 EVA1BQ9NVM1 165 aa11.25□□□□□ -0.61
RFC1-213ENST00000512275 ATG7O95352 703 aa11.24□□□□□ -0.61
RFC1-213ENST00000512275 AEBP1Q8IUX7 1158 aa11.24□□□□□ -0.61
RFC1-213ENST00000512275 NFATC2IPQ8NCF5 419 aa11.24□□□□□ -0.61
RFC1-213ENST00000512275 GPSM3Q9Y4H4 160 aa11.24□□□□□ -0.61
RFC1-213ENST00000512275 GAPVD1Q14C86 1478 aa11.24□□□□□ -0.61
RFC1-213ENST00000512275 SPRYD7Q5W111 196 aa11.23□□□□□ -0.61
RFC1-213ENST00000512275 LIAT1Q6ZQX7 453 aa11.23□□□□□ -0.61
RFC1-213ENST00000512275 TRIM67Q6ZTA4 783 aa11.23□□□□□ -0.61
RFC1-213ENST00000512275 NUDT12Q9BQG2 462 aa11.23□□□□□ -0.61
RFC1-213ENST00000512275 PRDM9Q9NQV7 894 aa11.23□□□□□ -0.61
RFC1-213ENST00000512275 AQRO60306 1485 aaKnown RBP eCLIP11.23□□□□□ -0.614e-9■□□□□ 9.9
RFC1-213ENST00000512275 CUL7Q14999 1698 aa11.23□□□□□ -0.61
RFC1-213ENST00000512275 PIK3CDO00329 1044 aa11.22□□□□□ -0.61
RFC1-213ENST00000512275 CSB-PGBD3P0DP91 1061 aa11.22□□□□□ -0.61
RFC1-213ENST00000512275 CTHP32929 405 aa11.22□□□□□ -0.61
RFC1-213ENST00000512275 KCNH2Q12809 1159 aa11.22□□□□□ -0.61
RFC1-213ENST00000512275 GPKOWQ92917 476 aaPredicted RBP eCLIP11.22□□□□□ -0.61
RFC1-213ENST00000512275 OCSTAMPQ9BR26 566 aa11.22□□□□□ -0.61
RFC1-213ENST00000512275 LOC105371045A0A1W2PR82 267 aa11.21□□□□□ -0.61
RFC1-213ENST00000512275 ZNF598Q86UK7 904 aaKnown RBP11.21□□□□□ -0.61
RFC1-213ENST00000512275 CCDC9Q9Y3X0 531 aaKnown RBP11.21□□□□□ -0.61
RFC1-213ENST00000512275 ERICH3Q5RHP9 1530 aa11.2□□□□□ -0.62
RFC1-213ENST00000512275 PLA2G2CQ5R387 149 aa11.2□□□□□ -0.62
RFC1-213ENST00000512275 PDXDC2PQ6P474 469 aa11.2□□□□□ -0.62
RFC1-213ENST00000512275 ARMC2Q8NEN0 867 aa11.2□□□□□ -0.62
RFC1-213ENST00000512275 KANK4Q5T7N3 995 aaPredicted RBP11.19□□□□□ -0.62
RFC1-213ENST00000512275 ADAMTS12P58397 1594 aa11.19□□□□□ -0.62
RFC1-213ENST00000512275 GOLGA3Q08378 1498 aa11.19□□□□□ -0.62
RFC1-213ENST00000512275 RAPGEF2Q9Y4G8 1499 aa11.19□□□□□ -0.62
RFC1-213ENST00000512275 IGF1RP08069 1367 aa11.18□□□□□ -0.62
RFC1-213ENST00000512275 TMEM88BA6NKF7 163 aa11.18□□□□□ -0.62
RFC1-213ENST00000512275 BRD1O95696 1058 aa11.18□□□□□ -0.62
RFC1-213ENST00000512275 ZNF697Q5TEC3 545 aa11.18□□□□□ -0.62
RFC1-213ENST00000512275 NBPF14Q5TI25 921 aa11.18□□□□□ -0.62
RFC1-213ENST00000512275 GRIN2BQ13224 1484 aa11.18□□□□□ -0.62
RFC1-213ENST00000512275 PRXQ9BXM0 1461 aa11.18□□□□□ -0.62
RFC1-213ENST00000512275 PTK2Q05397 1052 aa11.17□□□□□ -0.62
RFC1-213ENST00000512275 PLEKHM2Q8IWE5 1019 aa11.17□□□□□ -0.62
RFC1-213ENST00000512275 FAM174AQ8TBP5 190 aa11.17□□□□□ -0.62
RFC1-213ENST00000512275 CDCA8Q53HL2 280 aa11.16□□□□□ -0.62
RFC1-213ENST00000512275 SNAPC4Q5SXM2 1469 aa11.16□□□□□ -0.62
RFC1-213ENST00000512275 CARNS1A5YM72 827 aa11.15□□□□□ -0.62
RFC1-213ENST00000512275 USP17L3A6NCW0 530 aa11.15□□□□□ -0.62
RFC1-213ENST00000512275 USP17L4A6NCW7 530 aa11.15□□□□□ -0.62
RFC1-213ENST00000512275 USP17L5A8MUK1 530 aa11.15□□□□□ -0.62
RFC1-213ENST00000512275 PRR20EP86478 221 aa11.15□□□□□ -0.62
RFC1-213ENST00000512275 PRR20CP86479 221 aa11.15□□□□□ -0.62
RFC1-213ENST00000512275 PRR20DP86480 221 aa11.15□□□□□ -0.62
RFC1-213ENST00000512275 PRR20BP86481 221 aa11.15□□□□□ -0.62
RFC1-213ENST00000512275 PRR20AP86496 221 aa11.15□□□□□ -0.62
RFC1-213ENST00000512275 KCNA1Q09470 495 aa11.15□□□□□ -0.62
RFC1-213ENST00000512275 ELOAQ14241 798 aaKnown RBP11.15□□□□□ -0.62
RFC1-213ENST00000512275 USP17L2Q6R6M4 530 aa11.15□□□□□ -0.62
RFC1-213ENST00000512275 USP17L1Q7RTZ2 530 aa11.15□□□□□ -0.62
RFC1-213ENST00000512275 ZNF592Q92610 1267 aa11.15□□□□□ -0.62
RFC1-213ENST00000512275 CARMIL1Q5VZK9 1371 aa11.15□□□□□ -0.63
RFC1-213ENST00000512275 PATL2C9JE40 543 aaKnown RBP11.14□□□□□ -0.63
RFC1-213ENST00000512275 MCCD1P59942 119 aaPredicted RBP11.14□□□□□ -0.63
RFC1-213ENST00000512275 SH3BP5LQ7L8J4 393 aa11.14□□□□□ -0.63
RFC1-213ENST00000512275 PHTF2Q8N3S3 785 aa11.14□□□□□ -0.63
RFC1-213ENST00000512275 VRTNQ9H8Y1 702 aa11.14□□□□□ -0.63
RFC1-213ENST00000512275 CEP126Q9P2H0 1117 aa11.14□□□□□ -0.63
RFC1-213ENST00000512275 CTTNBP2Q8WZ74 1663 aa11.14□□□□□ -0.63
RFC1-213ENST00000512275 SKIP12755 728 aa11.13□□□□□ -0.63
RFC1-213ENST00000512275 UNC93B1Q9H1C4 597 aa11.13□□□□□ -0.63
RFC1-213ENST00000512275 CHIC2Q9UKJ5 165 aa11.13□□□□□ -0.63
RFC1-213ENST00000512275 PTCRAQ6ISU1 281 aaPredicted RBP11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 80.9 ms