RNA–Protein interactions for RNA: ENST00000511859.5

RNF4-216, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 1,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-216ENST00000511859 PTF1AQ7RTS3 328 aa17■□□□□ 0.31
RNF4-216ENST00000511859 MTFR1LQ9H019 292 aa17■□□□□ 0.31
RNF4-216ENST00000511859 ARHGEF28Q8N1W1 1705 aaKnown RBP16.98■□□□□ 0.31
RNF4-216ENST00000511859 CEP350Q5VT06 3117 aa16.98■□□□□ 0.31
RNF4-216ENST00000511859 TXNRD1Q16881 649 aa16.98■□□□□ 0.31
RNF4-216ENST00000511859 TOM1L2Q6ZVM7 507 aa16.98■□□□□ 0.31
RNF4-216ENST00000511859 BRD4O60885 1362 aaPredicted RBP16.97■□□□□ 0.31
RNF4-216ENST00000511859 AATKQ6ZMQ8 1374 aa16.97■□□□□ 0.31
RNF4-216ENST00000511859 MARCH10Q8NA82 808 aaPredicted RBP16.97■□□□□ 0.31
RNF4-216ENST00000511859 SGIP1Q9BQI5 828 aa16.97■□□□□ 0.31
RNF4-216ENST00000511859 TOPAZ1Q8N9V7 1692 aa16.97■□□□□ 0.31
RNF4-216ENST00000511859 GOLGB1Q14789 3259 aaKnown RBP16.96■□□□□ 0.31
RNF4-216ENST00000511859 LRRC37A3O60309 1634 aa16.95■□□□□ 0.3
RNF4-216ENST00000511859 ZBTB7CA1YPR0 619 aa16.94■□□□□ 0.3
RNF4-216ENST00000511859 NLRP6P59044 892 aa16.94■□□□□ 0.3
RNF4-216ENST00000511859 ARXQ96QS3 562 aa16.94■□□□□ 0.3
RNF4-216ENST00000511859 EXOC5O00471 708 aa16.93■□□□□ 0.3
RNF4-216ENST00000511859 AKAP12Q02952 1782 aa16.93■□□□□ 0.3
RNF4-216ENST00000511859 WDR17Q8IZU2 1322 aa16.93■□□□□ 0.3
RNF4-216ENST00000511859 MAP3K5Q99683 1374 aa16.92■□□□□ 0.3
RNF4-216ENST00000511859 GIGYF1O75420 1035 aaPredicted RBP16.91■□□□□ 0.3
RNF4-216ENST00000511859 KAT6BQ8WYB5 2073 aa16.91■□□□□ 0.3
RNF4-216ENST00000511859 GPR162Q16538 588 aa16.9■□□□□ 0.3
RNF4-216ENST00000511859 CARD10Q9BWT7 1032 aa16.9■□□□□ 0.3
RNF4-216ENST00000511859 AXIN2Q9Y2T1 843 aa16.9■□□□□ 0.3
RNF4-216ENST00000511859 PPIP5K1Q6PFW1 1433 aa16.9■□□□□ 0.3
RNF4-216ENST00000511859 SRPK2P78362 688 aaKnown RBP16.89■□□□□ 0.3
RNF4-216ENST00000511859 COL18A1P39060 1754 aa16.89■□□□□ 0.29
RNF4-216ENST00000511859 WNK3Q9BYP7 1800 aa16.89■□□□□ 0.29
RNF4-216ENST00000511859 SLIT3O75094 1523 aa16.88■□□□□ 0.29
RNF4-216ENST00000511859 ARHGEF25Q86VW2 580 aa16.87■□□□□ 0.29
RNF4-216ENST00000511859 CSB-PGBD3P0DP91 1061 aa16.86■□□□□ 0.29
RNF4-216ENST00000511859 KCNH5Q8NCM2 988 aa16.86■□□□□ 0.29
RNF4-216ENST00000511859 CABP1Q9NZU7 370 aa16.86■□□□□ 0.29
RNF4-216ENST00000511859 USP6P35125 1406 aa16.85■□□□□ 0.29
RNF4-216ENST00000511859 SLC16A10Q8TF71 515 aa16.85■□□□□ 0.29
RNF4-216ENST00000511859 CABP2Q9NPB3 220 aa16.85■□□□□ 0.29
RNF4-216ENST00000511859 CCDC7Q96M83 1385 aa16.84■□□□□ 0.29
RNF4-216ENST00000511859 RGPD5Q99666 1765 aa16.83■□□□□ 0.29
RNF4-216ENST00000511859 CPSF1Q10570 1443 aaKnown RBP16.83■□□□□ 0.28
RNF4-216ENST00000511859 POLD1P28340 1107 aa16.82■□□□□ 0.28
RNF4-216ENST00000511859 KIAA1210Q9ULL0 1709 aa16.82■□□□□ 0.28
RNF4-216ENST00000511859 RAB3GAP2Q9H2M9 1393 aa16.82■□□□□ 0.28
RNF4-216ENST00000511859 ZNF692Q9BU19 519 aaPredicted RBP16.81■□□□□ 0.28
RNF4-216ENST00000511859 CENPJQ9HC77 1338 aaPredicted RBP16.81■□□□□ 0.28
RNF4-216ENST00000511859 ACSBG1Q96GR2 724 aa16.8■□□□□ 0.28
RNF4-216ENST00000511859 NHSQ6T4R5 1651 aa16.8■□□□□ 0.28
RNF4-216ENST00000511859 GRIN3BO60391 1043 aa16.79■□□□□ 0.28
RNF4-216ENST00000511859 NBPF1Q3BBV0 1214 aa16.79■□□□□ 0.28
RNF4-216ENST00000511859 TNS2Q63HR2 1409 aa16.79■□□□□ 0.28
RNF4-216ENST00000511859 PAPPAQ13219 1627 aa16.78■□□□□ 0.28
RNF4-216ENST00000511859 PELP1Q8IZL8 1130 aaKnown RBP16.78■□□□□ 0.28
RNF4-216ENST00000511859 KLHL34Q8N239 644 aa16.78■□□□□ 0.28
RNF4-216ENST00000511859 PIK3C2AO00443 1686 aa16.78■□□□□ 0.28
RNF4-216ENST00000511859 ZNF827Q17R98 1081 aa16.77■□□□□ 0.28
RNF4-216ENST00000511859 LRRC4BQ9NT99 713 aa16.77■□□□□ 0.28
RNF4-216ENST00000511859 TRPM1Q7Z4N2 1603 aa16.77■□□□□ 0.28
RNF4-216ENST00000511859 SLC27A3Q5K4L6 730 aa16.77■□□□□ 0.27
RNF4-216ENST00000511859 AKT1S1Q96B36 256 aa16.77■□□□□ 0.27
RNF4-216ENST00000511859 BTAF1O14981 1849 aa16.76■□□□□ 0.27
RNF4-216ENST00000511859 TTC21BQ7Z4L5 1316 aa16.76■□□□□ 0.27
RNF4-216ENST00000511859 TTC21AQ8NDW8 1320 aa16.76■□□□□ 0.27
RNF4-216ENST00000511859 SOX12O15370 315 aa16.76■□□□□ 0.27
RNF4-216ENST00000511859 COL24A1Q17RW2 1714 aa16.75■□□□□ 0.27
RNF4-216ENST00000511859 QSER1Q2KHR3 1735 aa16.75■□□□□ 0.27
RNF4-216ENST00000511859 SHANK3Q9BYB0 1731 aa16.75■□□□□ 0.27
RNF4-216ENST00000511859 IL2RBP14784 551 aa16.75■□□□□ 0.27
RNF4-216ENST00000511859 QRICH2Q9H0J4 1663 aa16.74■□□□□ 0.27
RNF4-216ENST00000511859 EVC2Q86UK5 1308 aa16.74■□□□□ 0.27
RNF4-216ENST00000511859 ABCC6O95255 1503 aa16.74■□□□□ 0.27
RNF4-216ENST00000511859 PNPLA7Q6ZV29 1317 aa16.72■□□□□ 0.27
RNF4-216ENST00000511859 NLGN2Q8NFZ4 835 aa16.72■□□□□ 0.27
RNF4-216ENST00000511859 NLRP2Q9NX02 1062 aa16.72■□□□□ 0.27
RNF4-216ENST00000511859 TFCP2L1Q9NZI6 479 aa16.72■□□□□ 0.27
RNF4-216ENST00000511859 ERBB3P21860 1342 aa16.7■□□□□ 0.26
RNF4-216ENST00000511859 YBX3P16989 372 aaKnown RBP eCLIP16.7■□□□□ 0.26
RNF4-216ENST00000511859 NFAT5O94916 1531 aa16.69■□□□□ 0.26
RNF4-216ENST00000511859 HSPA6P17066 643 aa16.69■□□□□ 0.26
RNF4-216ENST00000511859 GPBP1L1Q9HC44 474 aaPredicted RBP16.68■□□□□ 0.26
RNF4-216ENST00000511859 ATP10DQ9P241 1426 aa16.66■□□□□ 0.26
RNF4-216ENST00000511859 KTN1Q86UP2 1357 aaKnown RBP16.66■□□□□ 0.26
RNF4-216ENST00000511859 ANKRD24Q8TF21 1146 aa16.65■□□□□ 0.26
RNF4-216ENST00000511859 DDX54Q8TDD1 881 aaKnown RBP16.64■□□□□ 0.26
RNF4-216ENST00000511859 USP31Q70CQ4 1352 aa16.64■□□□□ 0.25
RNF4-216ENST00000511859 TUBGCP6Q96RT7 1819 aa16.64■□□□□ 0.25
RNF4-216ENST00000511859 HMGB2P26583 209 aaKnown RBP16.63■□□□□ 0.25
RNF4-216ENST00000511859 SYTL4Q96C24 671 aaPredicted RBP16.63■□□□□ 0.25
RNF4-216ENST00000511859 CD2APQ9Y5K6 639 aa16.63■□□□□ 0.25
RNF4-216ENST00000511859 MSH5O43196 834 aa16.62■□□□□ 0.25
RNF4-216ENST00000511859 PRIM1P49642 420 aaKnown RBP16.62■□□□□ 0.25
RNF4-216ENST00000511859 KCNQ4P56696 695 aa16.62■□□□□ 0.25
RNF4-216ENST00000511859 LTN1O94822 1766 aa16.61■□□□□ 0.25
RNF4-216ENST00000511859 COL23A1Q86Y22 540 aaPredicted RBP16.61■□□□□ 0.25
RNF4-216ENST00000511859 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.61■□□□□ 0.25
RNF4-216ENST00000511859 ANKRD36BQ8N2N9 1353 aa16.6■□□□□ 0.25
RNF4-216ENST00000511859 LY75O60449 1722 aa16.6■□□□□ 0.25
RNF4-216ENST00000511859 CCNL1Q9UK58 526 aaPredicted RBP16.6■□□□□ 0.25
RNF4-216ENST00000511859 ADCY9O60503 1353 aa16.59■□□□□ 0.25
RNF4-216ENST00000511859 USP54Q70EL1 1684 aa16.58■□□□□ 0.24
RNF4-216ENST00000511859 FLAD1Q8NFF5 587 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 172.8 ms