RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 USP17L4A6NCW7 530 aa7.51□□□□□ -1.21
HMGB1P28-201ENST00000507778 LZTS3O60299 673 aaPredicted RBP7.51□□□□□ -1.21
HMGB1P28-201ENST00000507778 GIGYF1O75420 1035 aaPredicted RBP7.51□□□□□ -1.21
HMGB1P28-201ENST00000507778 VARSP26640 1264 aaKnown RBP7.51□□□□□ -1.21
HMGB1P28-201ENST00000507778 SKOR1P84550 965 aa7.51□□□□□ -1.21
HMGB1P28-201ENST00000507778 PDE4CQ08493 712 aa7.51□□□□□ -1.21
HMGB1P28-201ENST00000507778 NBPF20Q3BBV1 942 aa7.51□□□□□ -1.21
HMGB1P28-201ENST00000507778 MAP7D1Q3KQU3 841 aa7.51□□□□□ -1.21
HMGB1P28-201ENST00000507778 RNF20Q5VTR2 975 aa7.51□□□□□ -1.21
HMGB1P28-201ENST00000507778 USP17L2Q6R6M4 530 aa7.51□□□□□ -1.21
HMGB1P28-201ENST00000507778 USP17L1Q7RTZ2 530 aa7.51□□□□□ -1.21
HMGB1P28-201ENST00000507778 PLEKHM2Q8IWE5 1019 aa7.51□□□□□ -1.21
HMGB1P28-201ENST00000507778 PLPP7Q8NBV4 271 aa7.51□□□□□ -1.21
HMGB1P28-201ENST00000507778 KANK4Q5T7N3 995 aaPredicted RBP7.5□□□□□ -1.21
HMGB1P28-201ENST00000507778 LIAT1Q6ZQX7 453 aa7.5□□□□□ -1.21
HMGB1P28-201ENST00000507778 DEPDC4Q8N2C3 294 aa7.5□□□□□ -1.21
HMGB1P28-201ENST00000507778 CHIC2Q9UKJ5 165 aa7.5□□□□□ -1.21
HMGB1P28-201ENST00000507778 RGS20O76081 388 aa7.49□□□□□ -1.21
HMGB1P28-201ENST00000507778 ATG7O95352 703 aa7.49□□□□□ -1.21
HMGB1P28-201ENST00000507778 CSB-PGBD3P0DP91 1061 aa7.49□□□□□ -1.21
HMGB1P28-201ENST00000507778 TSGA10IPQ3SY00 556 aa7.49□□□□□ -1.21
HMGB1P28-201ENST00000507778 RC3H1Q5TC82 1133 aaKnown RBP7.49□□□□□ -1.21
HMGB1P28-201ENST00000507778 TRAIPQ9BWF2 469 aa7.49□□□□□ -1.21
HMGB1P28-201ENST00000507778 NCOA4Q13772 614 aa7.48□□□□□ -1.21
HMGB1P28-201ENST00000507778 EML3Q32P44 896 aa7.48□□□□□ -1.21
HMGB1P28-201ENST00000507778 CCDC125Q86Z20 511 aa7.48□□□□□ -1.21
HMGB1P28-201ENST00000507778 EHBP1Q8NDI1 1231 aa7.48□□□□□ -1.21
HMGB1P28-201ENST00000507778 MKRN1Q9UHC7 482 aaKnown RBP7.48□□□□□ -1.21
HMGB1P28-201ENST00000507778 DOLKQ9UPQ8 538 aa7.48□□□□□ -1.21
HMGB1P28-201ENST00000507778 ESPNB1AK53 854 aa7.47□□□□□ -1.21
HMGB1P28-201ENST00000507778 SLC19A1P41440 591 aa7.47□□□□□ -1.21
HMGB1P28-201ENST00000507778 TRAF7Q6Q0C0 670 aa7.47□□□□□ -1.21
HMGB1P28-201ENST00000507778 VASH1Q7L8A9 365 aaPredicted RBP7.47□□□□□ -1.21
HMGB1P28-201ENST00000507778 SEPT12Q8IYM1 358 aa7.47□□□□□ -1.21
HMGB1P28-201ENST00000507778 CCDC85AQ96PX6 553 aaPredicted RBP7.47□□□□□ -1.21
HMGB1P28-201ENST00000507778 KCTD15Q96SI1 283 aaPredicted RBP7.47□□□□□ -1.21
HMGB1P28-201ENST00000507778 A0A0G2JS52 829 aa7.46□□□□□ -1.22
HMGB1P28-201ENST00000507778 ATP5J2-PTCD1G3V325 749 aa7.46□□□□□ -1.22
HMGB1P28-201ENST00000507778 LARP1Q6PKG0 1096 aaKnown RBP7.46□□□□□ -1.22
HMGB1P28-201ENST00000507778 EMID1Q96A84 441 aaPredicted RBP7.46□□□□□ -1.22
HMGB1P28-201ENST00000507778 USTQ9Y2C2 406 aa7.46□□□□□ -1.22
HMGB1P28-201ENST00000507778 MAP4K5Q9Y4K4 846 aa7.46□□□□□ -1.22
HMGB1P28-201ENST00000507778 RASA1P20936 1047 aa7.45□□□□□ -1.22
HMGB1P28-201ENST00000507778 ARID5BQ14865 1188 aa7.45□□□□□ -1.22
HMGB1P28-201ENST00000507778 OXLD1Q5BKU9 147 aa7.45□□□□□ -1.22
HMGB1P28-201ENST00000507778 TRIM50Q86XT4 487 aa7.45□□□□□ -1.22
HMGB1P28-201ENST00000507778 NOD1Q9Y239 953 aa7.45□□□□□ -1.22
HMGB1P28-201ENST00000507778 PCDHB11Q9Y5F2 797 aa7.45□□□□□ -1.22
HMGB1P28-201ENST00000507778 ELOAQ14241 798 aaKnown RBP7.44□□□□□ -1.22
HMGB1P28-201ENST00000507778 SIRT1Q96EB6 747 aa7.44□□□□□ -1.22
HMGB1P28-201ENST00000507778 CDK15Q96Q40 435 aa7.44□□□□□ -1.22
HMGB1P28-201ENST00000507778 FAM196BA6NMK8 535 aa7.43□□□□□ -1.22
HMGB1P28-201ENST00000507778 WNT7AO00755 349 aa7.43□□□□□ -1.22
HMGB1P28-201ENST00000507778 SIAH2O43255 324 aa7.43□□□□□ -1.22
HMGB1P28-201ENST00000507778 ATP1A2P50993 1020 aa7.43□□□□□ -1.22
HMGB1P28-201ENST00000507778 RAB15P59190 212 aa7.43□□□□□ -1.22
HMGB1P28-201ENST00000507778 USP4Q13107 963 aa7.43□□□□□ -1.22
HMGB1P28-201ENST00000507778 INTS6LQ5JSJ4 861 aaKnown RBP7.43□□□□□ -1.22
HMGB1P28-201ENST00000507778 SPRYD7Q5W111 196 aa7.43□□□□□ -1.22
HMGB1P28-201ENST00000507778 MPNDQ8N594 471 aa7.43□□□□□ -1.22
HMGB1P28-201ENST00000507778 CDCA7Q9BWT1 371 aaPredicted RBP7.43□□□□□ -1.22
HMGB1P28-201ENST00000507778 NOVA2Q9UNW9 492 aaKnown RBP7.43□□□□□ -1.22
HMGB1P28-201ENST00000507778 USP17L15C9J2P7 530 aa7.42□□□□□ -1.22
HMGB1P28-201ENST00000507778 USP17L10C9JJH3 530 aa7.42□□□□□ -1.22
HMGB1P28-201ENST00000507778 USP17L13C9JLJ4 530 aa7.42□□□□□ -1.22
HMGB1P28-201ENST00000507778 USP17L12C9JPN9 530 aa7.42□□□□□ -1.22
HMGB1P28-201ENST00000507778 USP17L11C9JVI0 530 aa7.42□□□□□ -1.22
HMGB1P28-201ENST00000507778 USP17L21D6R901 530 aa7.42□□□□□ -1.22
HMGB1P28-201ENST00000507778 USP17L18D6R9N7 530 aa7.42□□□□□ -1.22
HMGB1P28-201ENST00000507778 USP17L22D6RA61 530 aa7.42□□□□□ -1.22
HMGB1P28-201ENST00000507778 USP17L17D6RBQ6 530 aa7.42□□□□□ -1.22
HMGB1P28-201ENST00000507778 USP17L19D6RCP7 530 aa7.42□□□□□ -1.22
HMGB1P28-201ENST00000507778 USP17L20D6RJB6 530 aa7.42□□□□□ -1.22
HMGB1P28-201ENST00000507778 USP17L24Q0WX57 530 aa7.42□□□□□ -1.22
HMGB1P28-201ENST00000507778 TRIM26Q12899 539 aaPredicted RBP7.42□□□□□ -1.22
HMGB1P28-201ENST00000507778 PTK7Q13308 1070 aa7.42□□□□□ -1.22
HMGB1P28-201ENST00000507778 CRTC2Q53ET0 693 aaPredicted RBP7.42□□□□□ -1.22
HMGB1P28-201ENST00000507778 OGFOD1Q8N543 542 aa7.42□□□□□ -1.22
HMGB1P28-201ENST00000507778 KCTD17Q8N5Z5 321 aa7.42□□□□□ -1.22
HMGB1P28-201ENST00000507778 DNAAF2Q9NVR5 837 aaKnown RBP7.42□□□□□ -1.22
HMGB1P28-201ENST00000507778 ZBTB7CA1YPR0 619 aa7.41□□□□□ -1.22
HMGB1P28-201ENST00000507778 ERVH48-1M5A8F1 160 aa7.41□□□□□ -1.22
HMGB1P28-201ENST00000507778 GRM5P41594 1212 aa7.41□□□□□ -1.22
HMGB1P28-201ENST00000507778 CLDN10P78369 228 aa7.41□□□□□ -1.22
HMGB1P28-201ENST00000507778 TRIM52Q96A61 297 aa7.41□□□□□ -1.22
HMGB1P28-201ENST00000507778 MRGPRX2Q96LB1 330 aa7.41□□□□□ -1.22
HMGB1P28-201ENST00000507778 FSHRP23945 695 aa7.4□□□□□ -1.22
HMGB1P28-201ENST00000507778 GTF2IP78347 998 aa7.4□□□□□ -1.22
HMGB1P28-201ENST00000507778 DHX9Q08211 1270 aaKnown RBP7.4□□□□□ -1.22
HMGB1P28-201ENST00000507778 NR5A1Q13285 461 aa7.4□□□□□ -1.22
HMGB1P28-201ENST00000507778 ZNF598Q86UK7 904 aaKnown RBP7.4□□□□□ -1.22
HMGB1P28-201ENST00000507778 AEBP1Q8IUX7 1158 aa7.4□□□□□ -1.22
HMGB1P28-201ENST00000507778 ANKMY2Q8IV38 441 aa7.4□□□□□ -1.22
HMGB1P28-201ENST00000507778 LARGE2Q8N3Y3 721 aa7.4□□□□□ -1.22
HMGB1P28-201ENST00000507778 FAM200AQ8TCP9 573 aa7.4□□□□□ -1.22
HMGB1P28-201ENST00000507778 ESF1Q9H501 851 aaKnown RBP7.4□□□□□ -1.22
HMGB1P28-201ENST00000507778 ZMIZ1Q9ULJ6 1067 aa7.4□□□□□ -1.22
HMGB1P28-201ENST00000507778 TLL2Q9Y6L7 1015 aa7.4□□□□□ -1.22
HMGB1P28-201ENST00000507778 CARNS1A5YM72 827 aa7.39□□□□□ -1.23
HMGB1P28-201ENST00000507778 TMEM88BA6NKF7 163 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms