RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 TESK2Q96S53 571 aa25.24■■□□□ 1.63
SQSTM1-209ENST00000504627 MON2Q7Z3U7 1717 aa25.23■■□□□ 1.63
SQSTM1-209ENST00000504627 CD163L1Q9NR16 1453 aa25.23■■□□□ 1.63
SQSTM1-209ENST00000504627 TRIM37O94972 964 aa25.23■■□□□ 1.63
SQSTM1-209ENST00000504627 NME9Q86XW9 330 aa25.23■■□□□ 1.63
SQSTM1-209ENST00000504627 RGPD1P0DJD0 1748 aa25.23■■□□□ 1.63
SQSTM1-209ENST00000504627 WDR17Q8IZU2 1322 aa25.22■■□□□ 1.63
SQSTM1-209ENST00000504627 USP31Q70CQ4 1352 aa25.21■■□□□ 1.63
SQSTM1-209ENST00000504627 EDC4Q6P2E9 1401 aaKnown RBP25.2■■□□□ 1.63
SQSTM1-209ENST00000504627 A0A1W2PP64 1363 aa25.2■■□□□ 1.63
SQSTM1-209ENST00000504627 COL18A1P39060 1754 aa25.19■■□□□ 1.62
SQSTM1-209ENST00000504627 SRCAPQ6ZRS2 3230 aa25.19■■□□□ 1.62
SQSTM1-209ENST00000504627 NINLQ9Y2I6 1382 aa25.18■■□□□ 1.62
SQSTM1-209ENST00000504627 APBA3O96018 575 aa25.18■■□□□ 1.62
SQSTM1-209ENST00000504627 USP47Q96K76 1375 aa25.18■■□□□ 1.62
SQSTM1-209ENST00000504627 NFAT5O94916 1531 aa25.17■■□□□ 1.62
SQSTM1-209ENST00000504627 TMF1P82094 1093 aa25.17■■□□□ 1.62
SQSTM1-209ENST00000504627 DDB1Q16531 1140 aa25.17■■□□□ 1.62
SQSTM1-209ENST00000504627 C11orf95C9JLR9 678 aaPredicted RBP25.15■■□□□ 1.62
SQSTM1-209ENST00000504627 EZH2Q15910 746 aaKnown RBP25.15■■□□□ 1.62
SQSTM1-209ENST00000504627 CDCA7Q9BWT1 371 aaPredicted RBP25.15■■□□□ 1.62
SQSTM1-209ENST00000504627 CARD10Q9BWT7 1032 aa25.15■■□□□ 1.62
SQSTM1-209ENST00000504627 PARP4Q9UKK3 1724 aaKnown RBP25.15■■□□□ 1.62
SQSTM1-209ENST00000504627 DISP2A7MBM2 1401 aa25.14■■□□□ 1.62
SQSTM1-209ENST00000504627 TNS1Q9HBL0 1735 aaKnown RBP25.12■■□□□ 1.61
SQSTM1-209ENST00000504627 PSDA5PKW4 1024 aaPredicted RBP25.12■■□□□ 1.61
SQSTM1-209ENST00000504627 RGPD5Q99666 1765 aa25.11■■□□□ 1.61
SQSTM1-209ENST00000504627 CAMKK2Q96RR4 588 aa25.11■■□□□ 1.61
SQSTM1-209ENST00000504627 OVOS2A0A0G2JMS6 1433 aa25.11■■□□□ 1.61
SQSTM1-209ENST00000504627 OVOS2A0A0J9YW53 1432 aa25.11■■□□□ 1.61
SQSTM1-209ENST00000504627 OVOS2Q6IE36 1432 aa25.11■■□□□ 1.61
SQSTM1-209ENST00000504627 ABCC6O95255 1503 aa25.1■■□□□ 1.61
SQSTM1-209ENST00000504627 USP54Q70EL1 1684 aa25.1■■□□□ 1.61
SQSTM1-209ENST00000504627 CCDC7Q96M83 1385 aa25.09■■□□□ 1.61
SQSTM1-209ENST00000504627 CDCA8Q53HL2 280 aa25.09■■□□□ 1.61
SQSTM1-209ENST00000504627 COG3Q96JB2 828 aa25.09■■□□□ 1.61
SQSTM1-209ENST00000504627 NLRP2Q9NX02 1062 aa25.09■■□□□ 1.61
SQSTM1-209ENST00000504627 ANKRD36BQ8N2N9 1353 aa25.07■■□□□ 1.6
SQSTM1-209ENST00000504627 PARD3Q8TEW0 1356 aa25.07■■□□□ 1.6
SQSTM1-209ENST00000504627 EXOC5O00471 708 aa25.07■■□□□ 1.6
SQSTM1-209ENST00000504627 LRRC37A3O60309 1634 aa25.07■■□□□ 1.6
SQSTM1-209ENST00000504627 ERBB3P21860 1342 aa25.07■■□□□ 1.6
SQSTM1-209ENST00000504627 ANKRD24Q8TF21 1146 aa25.06■■□□□ 1.6
SQSTM1-209ENST00000504627 R3HDM1Q15032 1099 aaKnown RBP25.05■■□□□ 1.6
SQSTM1-209ENST00000504627 LTN1O94822 1766 aa25.04■■□□□ 1.6
SQSTM1-209ENST00000504627 MARCH10Q8NA82 808 aaPredicted RBP25.04■■□□□ 1.6
SQSTM1-209ENST00000504627 IP6K1Q92551 441 aa25.02■■□□□ 1.6
SQSTM1-209ENST00000504627 WNK3Q9BYP7 1800 aa25.02■■□□□ 1.6
SQSTM1-209ENST00000504627 NBPF14Q5TI25 921 aa25■■□□□ 1.59
SQSTM1-209ENST00000504627 LTV1Q96GA3 475 aaPredicted RBP25■■□□□ 1.59
SQSTM1-209ENST00000504627 IL2RBP14784 551 aa24.99■■□□□ 1.59
SQSTM1-209ENST00000504627 AMPHP49418 695 aa24.99■■□□□ 1.59
SQSTM1-209ENST00000504627 BCL11BQ9C0K0 894 aaPredicted RBP24.99■■□□□ 1.59
SQSTM1-209ENST00000504627 PEAK1Q9H792 1746 aa24.99■■□□□ 1.59
SQSTM1-209ENST00000504627 GGNBP2Q9H3C7 697 aa24.98■■□□□ 1.59
SQSTM1-209ENST00000504627 MAP3K19Q56UN5 1328 aa24.97■■□□□ 1.59
SQSTM1-209ENST00000504627 FYB1O15117 783 aa24.97■■□□□ 1.59
SQSTM1-209ENST00000504627 FBLN1P23142 703 aa24.97■■□□□ 1.59
SQSTM1-209ENST00000504627 TNS2Q63HR2 1409 aa24.95■■□□□ 1.59
SQSTM1-209ENST00000504627 PLSCR1O15162 318 aa24.95■■□□□ 1.58
SQSTM1-209ENST00000504627 BCL9O00512 1426 aa24.95■■□□□ 1.58
SQSTM1-209ENST00000504627 HOXC9P31274 260 aa24.94■■□□□ 1.58
SQSTM1-209ENST00000504627 PTF1AQ7RTS3 328 aa24.94■■□□□ 1.58
SQSTM1-209ENST00000504627 SBF2Q86WG5 1849 aa24.93■■□□□ 1.58
SQSTM1-209ENST00000504627 RREB1Q92766 1687 aa24.92■■□□□ 1.58
SQSTM1-209ENST00000504627 RRS1Q15050 365 aaKnown RBP24.92■■□□□ 1.58
SQSTM1-209ENST00000504627 POLR3GLQ9BT43 218 aa24.92■■□□□ 1.58
SQSTM1-209ENST00000504627 LRP5O75197 1615 aa24.9■■□□□ 1.58
SQSTM1-209ENST00000504627 NUP188Q5SRE5 1749 aa24.89■■□□□ 1.58
SQSTM1-209ENST00000504627 ACSBG1Q96GR2 724 aa24.89■■□□□ 1.58
SQSTM1-209ENST00000504627 EIF4G2P78344 907 aaKnown RBP eCLIP24.88■■□□□ 1.57
SQSTM1-209ENST00000504627 RTL1A6NKG5 1358 aa24.88■■□□□ 1.57
SQSTM1-209ENST00000504627 NSD3Q9BZ95 1437 aa24.87■■□□□ 1.57
SQSTM1-209ENST00000504627 CARD14Q9BXL6 1004 aa24.87■■□□□ 1.57
SQSTM1-209ENST00000504627 KCNQ2O43526 872 aa24.86■■□□□ 1.57
SQSTM1-209ENST00000504627 FAM208AQ9UK61 1670 aaKnown RBP24.85■■□□□ 1.57
SQSTM1-209ENST00000504627 DDX54Q8TDD1 881 aaKnown RBP24.85■■□□□ 1.57
SQSTM1-209ENST00000504627 RGPD3A6NKT7 1758 aaPredicted RBP24.84■■□□□ 1.57
SQSTM1-209ENST00000504627 RGPD4Q7Z3J3 1758 aa24.84■■□□□ 1.57
SQSTM1-209ENST00000504627 SMG6Q86US8 1419 aaKnown RBP24.84■■□□□ 1.57
SQSTM1-209ENST00000504627 HSPA5P11021 654 aaKnown RBP24.83■■□□□ 1.57
SQSTM1-209ENST00000504627 KIF20BQ96Q89 1820 aa24.83■■□□□ 1.57
SQSTM1-209ENST00000504627 MYOM1P52179 1685 aa24.82■■□□□ 1.56
SQSTM1-209ENST00000504627 TXNRD1Q16881 649 aa24.82■■□□□ 1.56
SQSTM1-209ENST00000504627 PROM2Q8N271 834 aa24.82■■□□□ 1.56
SQSTM1-209ENST00000504627 HSP90AB2PQ58FF8 381 aa24.8■■□□□ 1.56
SQSTM1-209ENST00000504627 NBPF6Q5VWK0 638 aa24.8■■□□□ 1.56
SQSTM1-209ENST00000504627 NBPF4Q96M43 638 aa24.8■■□□□ 1.56
SQSTM1-209ENST00000504627 CGNL1Q0VF96 1302 aa24.8■■□□□ 1.56
SQSTM1-209ENST00000504627 FLT4P35916 1363 aa24.8■■□□□ 1.56
SQSTM1-209ENST00000504627 ANO8Q9HCE9 1232 aaPredicted RBP24.79■■□□□ 1.56
SQSTM1-209ENST00000504627 KAT6BQ8WYB5 2073 aa24.79■■□□□ 1.56
SQSTM1-209ENST00000504627 USHBP1Q8N6Y0 703 aa24.78■■□□□ 1.56
SQSTM1-209ENST00000504627 ZCRB1Q8TBF4 217 aaKnown RBP24.78■■□□□ 1.56
SQSTM1-209ENST00000504627 RAPGEF4Q8WZA2 1011 aa24.78■■□□□ 1.56
SQSTM1-209ENST00000504627 STK32BQ9NY57 414 aa24.78■■□□□ 1.56
SQSTM1-209ENST00000504627 NHSQ6T4R5 1651 aa24.78■■□□□ 1.56
SQSTM1-209ENST00000504627 INSRP06213 1382 aa24.78■■□□□ 1.56
SQSTM1-209ENST00000504627 PPM1GO15355 546 aaPredicted RBP24.77■■□□□ 1.56
SQSTM1-209ENST00000504627 KIF24Q5T7B8 1368 aa24.77■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms