RNA–Protein interactions for RNA: ENST00000498814.1

CPNE1-228, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-228ENST00000498814 RBM6P78332 1123 aaKnown RBP21.3■■□□□ 1
CPNE1-228ENST00000498814 COL5A2P05997 1499 aaPredicted RBP21.29■■□□□ 1
CPNE1-228ENST00000498814 FBLN1P23142 703 aa21.29■■□□□ 1
CPNE1-228ENST00000498814 GJD4Q96KN9 370 aaPredicted RBP21.29■■□□□ 1
CPNE1-228ENST00000498814 AXIN2Q9Y2T1 843 aa21.29■■□□□ 1
CPNE1-228ENST00000498814 MAP3K19Q56UN5 1328 aa21.29■■□□□ 1
CPNE1-228ENST00000498814 NPC1L1Q9UHC9 1359 aa21.28■■□□□ 1
CPNE1-228ENST00000498814 EVA1CP58658 441 aa21.28■■□□□ 1
CPNE1-228ENST00000498814 GLI3P10071 1580 aa21.27■■□□□ 1
CPNE1-228ENST00000498814 STRN4Q9NRL3 753 aa21.27■■□□□ 1
CPNE1-228ENST00000498814 IP6K1Q92551 441 aa21.26■□□□□ 0.99
CPNE1-228ENST00000498814 CDK12Q9NYV4 1490 aaPredicted RBP21.26■□□□□ 0.99
CPNE1-228ENST00000498814 RTL1A6NKG5 1358 aa21.25■□□□□ 0.99
CPNE1-228ENST00000498814 KIF24Q5T7B8 1368 aa21.25■□□□□ 0.99
CPNE1-228ENST00000498814 BLMP54132 1417 aaPredicted RBP21.25■□□□□ 0.99
CPNE1-228ENST00000498814 RRS1Q15050 365 aaKnown RBP21.25■□□□□ 0.99
CPNE1-228ENST00000498814 MORC1Q86VD1 984 aa21.25■□□□□ 0.99
CPNE1-228ENST00000498814 CCDC9Q9Y3X0 531 aaKnown RBP21.25■□□□□ 0.99
CPNE1-228ENST00000498814 SPATA31A5Q5VU36 1347 aa21.25■□□□□ 0.99
CPNE1-228ENST00000498814 SPATA31A7Q8IWB4 1347 aa21.25■□□□□ 0.99
CPNE1-228ENST00000498814 AMPHP49418 695 aa21.24■□□□□ 0.99
CPNE1-228ENST00000498814 ILDR2Q71H61 639 aa21.24■□□□□ 0.99
CPNE1-228ENST00000498814 PEAK1Q9H792 1746 aa21.24■□□□□ 0.99
CPNE1-228ENST00000498814 HOXC9P31274 260 aa21.23■□□□□ 0.99
CPNE1-228ENST00000498814 LARP1Q6PKG0 1096 aaKnown RBP21.23■□□□□ 0.99
CPNE1-228ENST00000498814 SPATA31A1Q5TZJ5 1347 aa21.23■□□□□ 0.99
CPNE1-228ENST00000498814 WDR17Q8IZU2 1322 aa21.23■□□□□ 0.99
CPNE1-228ENST00000498814 CRB1P82279 1406 aa21.22■□□□□ 0.99
CPNE1-228ENST00000498814 ZNF316A6NFI3 1004 aaPredicted RBP21.22■□□□□ 0.99
CPNE1-228ENST00000498814 TNNT2P45379 298 aaPredicted RBP21.21■□□□□ 0.99
CPNE1-228ENST00000498814 CC2D1BQ5T0F9 858 aaKnown RBP21.21■□□□□ 0.99
CPNE1-228ENST00000498814 POLKQ9UBT6 870 aa21.21■□□□□ 0.99
CPNE1-228ENST00000498814 ERBB3P21860 1342 aa21.21■□□□□ 0.99
CPNE1-228ENST00000498814 ONECUT3O60422 494 aaPredicted RBP21.2■□□□□ 0.98
CPNE1-228ENST00000498814 DDX10Q13206 875 aaKnown RBP21.2■□□□□ 0.98
CPNE1-228ENST00000498814 EMILIN1Q9Y6C2 1016 aa21.2■□□□□ 0.98
CPNE1-228ENST00000498814 FAM208AQ9UK61 1670 aaKnown RBP21.2■□□□□ 0.98
CPNE1-228ENST00000498814 FLT4P35916 1363 aa21.2■□□□□ 0.98
CPNE1-228ENST00000498814 ANKRD24Q8TF21 1146 aa21.19■□□□□ 0.98
CPNE1-228ENST00000498814 RGS12O14924 1447 aa21.19■□□□□ 0.98
CPNE1-228ENST00000498814 CSB-PGBD3P0DP91 1061 aa21.18■□□□□ 0.98
CPNE1-228ENST00000498814 TOM1L2Q6ZVM7 507 aa21.18■□□□□ 0.98
CPNE1-228ENST00000498814 INSRP06213 1382 aa21.18■□□□□ 0.98
CPNE1-228ENST00000498814 TCP11L2Q8N4U5 519 aa21.17■□□□□ 0.98
CPNE1-228ENST00000498814 THRAP3Q9Y2W1 955 aaKnown RBP21.17■□□□□ 0.98
CPNE1-228ENST00000498814 SMG6Q86US8 1419 aaKnown RBP21.17■□□□□ 0.98
CPNE1-228ENST00000498814 HSP90AB2PQ58FF8 381 aa21.16■□□□□ 0.98
CPNE1-228ENST00000498814 BARGINQ6ZT62 677 aa21.16■□□□□ 0.98
CPNE1-228ENST00000498814 CARD10Q9BWT7 1032 aa21.16■□□□□ 0.98
CPNE1-228ENST00000498814 THSD7AQ9UPZ6 1657 aa21.15■□□□□ 0.98
CPNE1-228ENST00000498814 PPM1GO15355 546 aaPredicted RBP21.15■□□□□ 0.98
CPNE1-228ENST00000498814 FAM98CQ17RN3 349 aaKnown RBP21.15■□□□□ 0.98
CPNE1-228ENST00000498814 USP35Q9P2H5 1018 aa21.15■□□□□ 0.98
CPNE1-228ENST00000498814 WNK3Q9BYP7 1800 aa21.15■□□□□ 0.98
CPNE1-228ENST00000498814 RGPD2P0DJD1 1756 aa21.15■□□□□ 0.98
CPNE1-228ENST00000498814 BRWD3Q6RI45 1802 aa21.14■□□□□ 0.97
CPNE1-228ENST00000498814 LTV1Q96GA3 475 aaPredicted RBP21.14■□□□□ 0.97
CPNE1-228ENST00000498814 NLRP2Q9NX02 1062 aa21.13■□□□□ 0.97
CPNE1-228ENST00000498814 CNGB1Q14028 1251 aaPredicted RBP21.12■□□□□ 0.97
CPNE1-228ENST00000498814 SEPT12Q8IYM1 358 aa21.12■□□□□ 0.97
CPNE1-228ENST00000498814 PARP4Q9UKK3 1724 aaKnown RBP21.1■□□□□ 0.97
CPNE1-228ENST00000498814 A0A0G2JS52 829 aa21.08■□□□□ 0.97
CPNE1-228ENST00000498814 MTHFSP49914 203 aa21.08■□□□□ 0.97
CPNE1-228ENST00000498814 MYT1Q01538 1121 aa21.08■□□□□ 0.97
CPNE1-228ENST00000498814 CDCA7Q9BWT1 371 aaPredicted RBP21.08■□□□□ 0.97
CPNE1-228ENST00000498814 DISP2A7MBM2 1401 aa21.07■□□□□ 0.96
CPNE1-228ENST00000498814 NBPF6Q5VWK0 638 aa21.07■□□□□ 0.96
CPNE1-228ENST00000498814 NBPF4Q96M43 638 aa21.07■□□□□ 0.96
CPNE1-228ENST00000498814 PARD3Q8TEW0 1356 aa21.07■□□□□ 0.96
CPNE1-228ENST00000498814 EIF4A2Q14240 407 aaKnown RBP21.05■□□□□ 0.96
CPNE1-228ENST00000498814 LRRC37A3O60309 1634 aa21.04■□□□□ 0.96
CPNE1-228ENST00000498814 PPP2R1AP30153 589 aa21.04■□□□□ 0.96
CPNE1-228ENST00000498814 IL2RBP14784 551 aa21.03■□□□□ 0.96
CPNE1-228ENST00000498814 KRT27Q7Z3Y8 459 aa21.03■□□□□ 0.96
CPNE1-228ENST00000498814 NCAPD2Q15021 1401 aa21.03■□□□□ 0.96
CPNE1-228ENST00000498814 RALBP1Q15311 655 aa21.02■□□□□ 0.96
CPNE1-228ENST00000498814 EYA1Q99502 592 aa21.02■□□□□ 0.96
CPNE1-228ENST00000498814 DDB1Q16531 1140 aa21■□□□□ 0.95
CPNE1-228ENST00000498814 USHBP1Q8N6Y0 703 aa21■□□□□ 0.95
CPNE1-228ENST00000498814 RGPD1P0DJD0 1748 aa21■□□□□ 0.95
CPNE1-228ENST00000498814 IL13P35225 146 aa20.99■□□□□ 0.95
CPNE1-228ENST00000498814 PDE3BQ13370 1112 aa20.99■□□□□ 0.95
CPNE1-228ENST00000498814 COL3A1P02461 1466 aaPredicted RBP20.99■□□□□ 0.95
CPNE1-228ENST00000498814 IGSF1Q8N6C5 1336 aa20.99■□□□□ 0.95
CPNE1-228ENST00000498814 EXOC5O00471 708 aa20.98■□□□□ 0.95
CPNE1-228ENST00000498814 TNS2Q63HR2 1409 aa20.97■□□□□ 0.95
CPNE1-228ENST00000498814 SOCS7O14512 581 aa20.97■□□□□ 0.95
CPNE1-228ENST00000498814 DIAPH1O60610 1272 aaKnown RBP20.97■□□□□ 0.95
CPNE1-228ENST00000498814 CFAP53Q96M91 514 aa20.97■□□□□ 0.95
CPNE1-228ENST00000498814 MEGF6O75095 1541 aa20.97■□□□□ 0.95
CPNE1-228ENST00000498814 RAPGEF4Q8WZA2 1011 aa20.96■□□□□ 0.95
CPNE1-228ENST00000498814 OVOS2A0A0G2JMS6 1433 aa20.95■□□□□ 0.95
CPNE1-228ENST00000498814 EP400Q96L91 3159 aa20.95■□□□□ 0.94
CPNE1-228ENST00000498814 TATP17735 454 aaPredicted RBP20.94■□□□□ 0.94
CPNE1-228ENST00000498814 PRKRIP1Q9H875 184 aaPredicted RBP20.94■□□□□ 0.94
CPNE1-228ENST00000498814 SHANK3Q9BYB0 1731 aa20.93■□□□□ 0.94
CPNE1-228ENST00000498814 PKD1L3Q7Z443 1732 aa20.92■□□□□ 0.94
CPNE1-228ENST00000498814 FAM182BQ5T319 152 aa20.92■□□□□ 0.94
CPNE1-228ENST00000498814 MARCH10Q8NA82 808 aaPredicted RBP20.92■□□□□ 0.94
CPNE1-228ENST00000498814 ZCRB1Q8TBF4 217 aaKnown RBP20.92■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms