RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.02□□□□□ -0.65
SF3A1-210ENST00000498259 RSPH6AQ9H0K4 717 aa11.02□□□□□ -0.65
SF3A1-210ENST00000498259 USP19O94966 1318 aa11.02□□□□□ -0.65
SF3A1-210ENST00000498259 IL16Q14005 1332 aa11.02□□□□□ -0.65
SF3A1-210ENST00000498259 ZNF521Q96K83 1311 aa11.02□□□□□ -0.65
SF3A1-210ENST00000498259 FBLN1P23142 703 aa11.01□□□□□ -0.65
SF3A1-210ENST00000498259 RIPK4P57078 832 aa11.01□□□□□ -0.65
SF3A1-210ENST00000498259 NEUROD2Q15784 382 aa11.01□□□□□ -0.65
SF3A1-210ENST00000498259 SUPT16HQ9Y5B9 1047 aaKnown RBP11.01□□□□□ -0.65
SF3A1-210ENST00000498259 TNS3Q68CZ2 1445 aa11.01□□□□□ -0.65
SF3A1-210ENST00000498259 TOM1O60784 492 aa11□□□□□ -0.65
SF3A1-210ENST00000498259 CT47B1P0C2W7 299 aaPredicted RBP11□□□□□ -0.65
SF3A1-210ENST00000498259 HAP1P54257 671 aaPredicted RBP11□□□□□ -0.65
SF3A1-210ENST00000498259 XPCQ01831 940 aaPredicted RBP11□□□□□ -0.65
SF3A1-210ENST00000498259 SLFN5Q08AF3 891 aa11□□□□□ -0.65
SF3A1-210ENST00000498259 NFE2L2Q16236 605 aa11□□□□□ -0.65
SF3A1-210ENST00000498259 SULT6B1Q6IMI4 303 aa11□□□□□ -0.65
SF3A1-210ENST00000498259 PELP1Q8IZL8 1130 aaKnown RBP11□□□□□ -0.65
SF3A1-210ENST00000498259 RCAN3Q9UKA8 241 aa11□□□□□ -0.65
SF3A1-210ENST00000498259 SPATA31A3Q5VYP0 1347 aa11□□□□□ -0.65
SF3A1-210ENST00000498259 HMOX1P09601 288 aa10.99□□□□□ -0.65
SF3A1-210ENST00000498259 ARHGEF25Q86VW2 580 aa10.99□□□□□ -0.65
SF3A1-210ENST00000498259 GAS2L2Q8NHY3 880 aa10.99□□□□□ -0.65
SF3A1-210ENST00000498259 SOS2Q07890 1332 aaPredicted RBP10.99□□□□□ -0.65
SF3A1-210ENST00000498259 LRRC59Q96AG4 307 aaKnown RBP10.98□□□□□ -0.65
SF3A1-210ENST00000498259 IQSEC2Q5JU85 1478 aa10.98□□□□□ -0.65
SF3A1-210ENST00000498259 SLIT3O75094 1523 aa10.98□□□□□ -0.65
SF3A1-210ENST00000498259 HTATSF1O43719 755 aaKnown RBP10.97□□□□□ -0.65
SF3A1-210ENST00000498259 DUSP27Q5VZP5 1158 aa10.97□□□□□ -0.65
SF3A1-210ENST00000498259 TRMT2AQ8IZ69 625 aaKnown RBP10.97□□□□□ -0.65
SF3A1-210ENST00000498259 PIAS4Q8N2W9 510 aaPredicted RBP10.97□□□□□ -0.65
SF3A1-210ENST00000498259 RTF1Q92541 710 aaKnown RBP10.97□□□□□ -0.65
SF3A1-210ENST00000498259 RRP7AQ9Y3A4 280 aaKnown RBP10.97□□□□□ -0.65
SF3A1-210ENST00000498259 IGSF1Q8N6C5 1336 aa10.97□□□□□ -0.65
SF3A1-210ENST00000498259 TRPM3Q9HCF6 1732 aaPredicted RBP10.96□□□□□ -0.65
SF3A1-210ENST00000498259 PXDNQ92626 1479 aa10.96□□□□□ -0.65
SF3A1-210ENST00000498259 KDRP35968 1356 aa10.96□□□□□ -0.65
SF3A1-210ENST00000498259 ZBTB7CA1YPR0 619 aa10.96□□□□□ -0.65
SF3A1-210ENST00000498259 GNAI1P63096 354 aa10.96□□□□□ -0.65
SF3A1-210ENST00000498259 FKBP8Q14318 412 aa10.96□□□□□ -0.65
SF3A1-210ENST00000498259 ZNF428Q96B54 188 aa10.96□□□□□ -0.65
SF3A1-210ENST00000498259 CDCA7LQ96GN5 454 aa10.96□□□□□ -0.65
SF3A1-210ENST00000498259 XIRP1Q702N8 1843 aaKnown RBP10.95□□□□□ -0.66
SF3A1-210ENST00000498259 PHRF1Q9P1Y6 1649 aaKnown RBP10.95□□□□□ -0.66
SF3A1-210ENST00000498259 NFAT5O94916 1531 aa10.95□□□□□ -0.66
SF3A1-210ENST00000498259 ABCC6O95255 1503 aa10.95□□□□□ -0.66
SF3A1-210ENST00000498259 CPDO75976 1380 aa10.95□□□□□ -0.66
SF3A1-210ENST00000498259 PLEKHG2Q9H7P9 1386 aa10.95□□□□□ -0.66
SF3A1-210ENST00000498259 SENP3-EIF4A1A0A087X0R7 540 aa10.95□□□□□ -0.66
SF3A1-210ENST00000498259 AMOTQ4VCS5 1084 aa10.95□□□□□ -0.66
SF3A1-210ENST00000498259 EYA1Q99502 592 aa10.95□□□□□ -0.66
SF3A1-210ENST00000498259 LTV1Q96GA3 475 aaPredicted RBP10.94□□□□□ -0.66
SF3A1-210ENST00000498259 CHMP4AQ9BY43 222 aa10.94□□□□□ -0.66
SF3A1-210ENST00000498259 ALS2Q96Q42 1657 aa10.94□□□□□ -0.66
SF3A1-210ENST00000498259 RNF123Q5XPI4 1314 aa10.93□□□□□ -0.66
SF3A1-210ENST00000498259 MS4A1P11836 297 aa10.93□□□□□ -0.66
SF3A1-210ENST00000498259 PLEKHO1Q53GL0 409 aaPredicted RBP10.93□□□□□ -0.66
SF3A1-210ENST00000498259 ANKRD24Q8TF21 1146 aa10.93□□□□□ -0.66
SF3A1-210ENST00000498259 PHACTR3Q96KR7 559 aa10.93□□□□□ -0.66
SF3A1-210ENST00000498259 IFT57Q9NWB7 429 aa10.93□□□□□ -0.66
SF3A1-210ENST00000498259 TRIM35Q9UPQ4 493 aa10.93□□□□□ -0.66
SF3A1-210ENST00000498259 LTBP4Q8N2S1 1624 aa10.92□□□□□ -0.66
SF3A1-210ENST00000498259 MED1Q15648 1581 aaPredicted RBP10.92□□□□□ -0.66
SF3A1-210ENST00000498259 CSB-PGBD3P0DP91 1061 aa10.92□□□□□ -0.66
SF3A1-210ENST00000498259 ZC3H6P61129 1189 aaKnown RBP10.92□□□□□ -0.66
SF3A1-210ENST00000498259 DDX17Q92841 729 aaKnown RBP10.92□□□□□ -0.66
SF3A1-210ENST00000498259 PRDM11Q9NQV5 511 aa10.92□□□□□ -0.66
SF3A1-210ENST00000498259 PEAK1Q9H792 1746 aa10.92□□□□□ -0.66
SF3A1-210ENST00000498259 GNAT3A8MTJ3 354 aa10.91□□□□□ -0.66
SF3A1-210ENST00000498259 PLEKHG5O94827 1062 aa10.91□□□□□ -0.66
SF3A1-210ENST00000498259 RRP1P56182 461 aaKnown RBP10.91□□□□□ -0.66
SF3A1-210ENST00000498259 AEBP1Q8IUX7 1158 aa10.91□□□□□ -0.66
SF3A1-210ENST00000498259 RAPGEF4Q8WZA2 1011 aa10.91□□□□□ -0.66
SF3A1-210ENST00000498259 CFAP44Q96MT7 982 aa10.91□□□□□ -0.66
SF3A1-210ENST00000498259 BABAM1Q9NWV8 329 aa10.91□□□□□ -0.66
SF3A1-210ENST00000498259 LTN1O94822 1766 aa10.9□□□□□ -0.66
SF3A1-210ENST00000498259 ERBB3P21860 1342 aa10.9□□□□□ -0.66
SF3A1-210ENST00000498259 MARF1Q9Y4F3 1742 aaKnown RBP10.9□□□□□ -0.66
SF3A1-210ENST00000498259 CANXP27824 592 aaKnown RBP10.9□□□□□ -0.66
SF3A1-210ENST00000498259 C1orf141Q5JVX7 400 aa10.9□□□□□ -0.66
SF3A1-210ENST00000498259 RGPD1P0DJD0 1748 aa10.89□□□□□ -0.67
SF3A1-210ENST00000498259 EVA1CP58658 441 aa10.89□□□□□ -0.67
SF3A1-210ENST00000498259 NBPF6Q5VWK0 638 aa10.89□□□□□ -0.67
SF3A1-210ENST00000498259 NBPF4Q96M43 638 aa10.89□□□□□ -0.67
SF3A1-210ENST00000498259 NLRP2Q9NX02 1062 aa10.89□□□□□ -0.67
SF3A1-210ENST00000498259 PPP4R2Q9NY27 417 aa10.89□□□□□ -0.67
SF3A1-210ENST00000498259 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.89□□□□□ -0.67
SF3A1-210ENST00000498259 SPG7Q9UQ90 795 aa10.89□□□□□ -0.67
SF3A1-210ENST00000498259 KIAA0232Q92628 1395 aa10.89□□□□□ -0.67
SF3A1-210ENST00000498259 FANCIQ9NVI1 1328 aa10.88□□□□□ -0.67
SF3A1-210ENST00000498259 NHSL1Q5SYE7 1610 aa10.88□□□□□ -0.67
SF3A1-210ENST00000498259 IPO8O15397 1037 aaKnown RBP10.88□□□□□ -0.67
SF3A1-210ENST00000498259 TATP17735 454 aaPredicted RBP10.88□□□□□ -0.67
SF3A1-210ENST00000498259 AAMPQ13685 434 aa10.88□□□□□ -0.67
SF3A1-210ENST00000498259 MTHFSDQ2M296 383 aaKnown RBP10.88□□□□□ -0.67
SF3A1-210ENST00000498259 LAS1LQ9Y4W2 734 aaKnown RBP10.88□□□□□ -0.67
SF3A1-210ENST00000498259 SOS1Q07889 1333 aaPredicted RBP10.87□□□□□ -0.67
SF3A1-210ENST00000498259 UBAP1LF5GYI3 381 aa10.87□□□□□ -0.67
SF3A1-210ENST00000498259 HSP90AB1P08238 724 aaKnown RBP10.87□□□□□ -0.67
SF3A1-210ENST00000498259 ALDH1L2Q3SY69 923 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms